CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1162 & Codon = cTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1162P1162LnonsyncCacTa517951640.99710425046-25048

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1162P1162LcCacTa51645179All0.000988
S1162P1162LcCacTa909909B.1.1.70.000814
S1162P1162LcCacTa645647AY.40.001004
S1162P1162LcCacTa379379AY.1030.002353
S1162P1162LcCacTa288288AY.250.001732
S1162P1162LcCacTa275276B.1.617.20.001035
S1162P1162LcCacTa207207AY.120.10.066453
S1162P1162LcCacTa137137AY.30.001363
S1162P1162LcCacTa130130AY.140.011442
S1162P1162LcCacTa126126AY.440.000767
S1162P1162LcCacTa112117AY.430.000496
S1162P1162LcCacTa105105B.1.20.000925
S1162P1162LcCacTa100100AY.1160.028678
S1162P1162LcCacTa9393C.36.30.052751
S1162P1162LcCacTa8585AY.50.001755
S1162P1162LcCacTa8383B.10.00076
S1162P1162LcCacTa8181B.1.10.001469
S1162P1162LcCacTa6767B.1.1770.000882
S1162P1162LcCacTa6262AY.330.00414
S1162P1162LcCacTa4747B.1.4270.002373
S1162P1162LcCacTa4141B.1.4290.000965
S1162P1162LcCacTa3939P.10.000614
S1162P1162LcCacTa3637B.1.1.2970.080537
S1162P1162LcCacTa3636AY.60.001481
S1162P1162LcCacTa3535B.1.5260.000823
S1162P1162LcCacTa3131AY.70.006076
S1162P1162LcCacTa3131B.1.5250.003508
S1162P1162LcCacTa2727AY.1000.001242
S1162P1162LcCacTa2626AY.200.00101
S1162P1162LcCacTa2626B.1.5750.007888
S1162P1162LcCacTa2425AY.260.000679
S1162P1162LcCacTa2424B.1.3510.000713
S1162P1162LcCacTa2323B.1.1600.000717
S1162P1162LcCacTa2222B.1.4990.023109
S1162P1162LcCacTa2020AY.290.000315
S1162P1162LcCacTa1919AY.1180.00119
S1162P1162LcCacTa1919AY.390.00047
S1162P1162LcCacTa1919B.1.1.280.005913
S1162P1162LcCacTa1818AY.1020.000477
S1162P1162LcCacTa1616AY.470.000498
S1162P1162LcCacTa1616P.1.150.003717
S1162P1162LcCacTa1515P.1.140.000717
S1162P1162LcCacTa1414AY.610.001467
S1162P1162LcCacTa1414B0.001789
S1162P1162LcCacTa1414B.1.1.5190.000556
S1162P1162LcCacTa1313AY.3.10.001108
S1162P1162LcCacTa1212AY.4.2.10.001788
S1162P1162LcCacTa1212AY.46.50.002381
S1162P1162LcCacTa1111AY.1190.000388
S1162P1162LcCacTa1111B.1.1.3980.035484
S1162P1162LcCacTa1010AY.99.20.000922
S1162P1162LcCacTa1010B.1.177.600.002184
S1162P1162LcCacTa1010B.1.2430.000696
S1162P1162LcCacTa99AY.230.000628
S1162P1162LcCacTa99AY.840.003937
S1162P1162LcCacTa88AY.240.003448
S1162P1162LcCacTa88AY.270.000518
S1162P1162LcCacTa88B.1.1.2220.001632
S1162P1162LcCacTa88B.1.2580.000532
S1162P1162LcCacTa88C.370.000929
S1162P1162LcCacTa77AY.420.000282
S1162P1162LcCacTa77AY.450.000852
S1162P1162LcCacTa77AY.480.003256
S1162P1162LcCacTa77B.1.1.2770.005311
S1162P1162LcCacTa77B.1.177.40.001477
S1162P1162LcCacTa77B.1.177.520.012302
S1162P1162LcCacTa77B.1.5960.00061
S1162P1162LcCacTa77B.1.617.10.000903
S1162P1162LcCacTa77P.20.001306
S1162P1162LcCacTa66AY.120.20.007712
S1162P1162LcCacTa66AY.1210.000812
S1162P1162LcCacTa66AY.340.000582
S1162P1162LcCacTa66AY.350.001398
S1162P1162LcCacTa66AY.4.20.00013
S1162P1162LcCacTa66AY.460.000624
S1162P1162LcCacTa66B.1.1.390.003058
S1162P1162LcCacTa66B.1.2340.000792
S1162P1162LcCacTa66B.1.4000.002574
S1162P1162LcCacTa66B.400.002186
S1162P1162LcCacTa66D.20.00045
S1162P1162LcCacTa66Q.80.000989
S1162P1162LcCacTa55AY.160.001898
S1162P1162LcCacTa55B.1.1.2140.000277
S1162P1162LcCacTa55B.1.1.630.001929
S1162P1162LcCacTa55B.1.3400.021459
S1162P1162LcCacTa55N.50.008834
S1162P1162LcCacTa44AY.116.10.001246
S1162P1162LcCacTa44AY.46.60.000289
S1162P1162LcCacTa44AY.540.000381
S1162P1162LcCacTa44AY.75.10.000721
S1162P1162LcCacTa44AY.90.00027
S1162P1162LcCacTa44AY.9.10.000335
S1162P1162LcCacTa44AY.920.001149
S1162P1162LcCacTa44AY.930.001092
S1162P1162LcCacTa44AY.98.10.000194
S1162P1162LcCacTa44B.1.1.2070.004728
S1162P1162LcCacTa44B.1.2210.000284
S1162P1162LcCacTa44B.1.36.290.002069
S1162P1162LcCacTa44B.1.3690.001141
S1162P1162LcCacTa44Q.10.000505
S1162P1162LcCacTa230.111111
S1162P1162LcCacTa33AY.10.001187
S1162P1162LcCacTa33AY.1100.000338
S1162P1162LcCacTa33AY.1110.000549
S1162P1162LcCacTa33AY.1130.000427
S1162P1162LcCacTa33AY.1140.000693
S1162P1162LcCacTa33AY.1170.000254
S1162P1162LcCacTa33AY.130.000483
S1162P1162LcCacTa33AY.34.10.00153
S1162P1162LcCacTa33AY.400.002893
S1162P1162LcCacTa33AY.5.40.00083
S1162P1162LcCacTa33AY.740.000347
S1162P1162LcCacTa33AY.770.003382
S1162P1162LcCacTa33B.1.1.100.003344
S1162P1162LcCacTa33B.1.1.3170.001235
S1162P1162LcCacTa33B.1.1.700.001023
S1162P1162LcCacTa33B.1.177.100.002634
S1162P1162LcCacTa33B.1.177.440.001557
S1162P1162LcCacTa33B.1.177.500.014085
S1162P1162LcCacTa33B.1.177.560.002003
S1162P1162LcCacTa33B.1.360.000438
S1162P1162LcCacTa33B.1.3960.002117
S1162P1162LcCacTa33B.1.5820.001472
S1162P1162LcCacTa33B.1.5950.000783
S1162P1162LcCacTa33B.1.6210.000266
S1162P1162LcCacTa33C.40.03
S1162P1162LcCacTa22AD.20.000438
S1162P1162LcCacTa22AE.80.000978
S1162P1162LcCacTa22AY.1060.00067
S1162P1162LcCacTa22AY.1150.010417
S1162P1162LcCacTa22AY.1200.000074
S1162P1162LcCacTa22AY.120.2.10.000997
S1162P1162LcCacTa22AY.16.10.00094
S1162P1162LcCacTa22AY.300.000791
S1162P1162LcCacTa22AY.360.000296
S1162P1162LcCacTa22AY.370.000632
S1162P1162LcCacTa22AY.380.000999
S1162P1162LcCacTa22AY.4.50.000215
S1162P1162LcCacTa22AY.510.001818
S1162P1162LcCacTa22AY.630.000774
S1162P1162LcCacTa22AY.750.000112
S1162P1162LcCacTa22AY.980.000158
S1162P1162LcCacTa22B.1.1.1180.020408
S1162P1162LcCacTa22B.1.1.1330.016949
S1162P1162LcCacTa22B.1.1.1890.003026
S1162P1162LcCacTa22B.1.1.2200.003717
S1162P1162LcCacTa22B.1.1.3180.000604
S1162P1162LcCacTa22B.1.1.4480.004065
S1162P1162LcCacTa22B.1.1.4860.003155
S1162P1162LcCacTa22B.1.1080.011628
S1162P1162LcCacTa22B.1.1570.00597
S1162P1162LcCacTa22B.1.177.810.000379
S1162P1162LcCacTa22B.1.2320.001075
S1162P1162LcCacTa22B.1.2400.000431
S1162P1162LcCacTa22B.1.3890.002004
S1162P1162LcCacTa22B.1.4090.001563
S1162P1162LcCacTa22B.1.5600.009259
S1162P1162LcCacTa22B.1.5680.002222
S1162P1162LcCacTa22B.1.5770.001375
S1162P1162LcCacTa22B.1.6280.000705
S1162P1162LcCacTa22B.470.040816
S1162P1162LcCacTa22N.90.011905
S1162P1162LcCacTa22P.1.100.000539
S1162P1162LcCacTa22P.1.120.000968
S1162P1162LcCacTa22P.1.170.000324
S1162P1162LcCacTa22P.1.70.000639
S1162P1162LcCacTa22P.50.027397
S1162P1162LcCacTa22R.10.00018
S1162P1162LcCacTa11A.180.05
S1162P1162LcCacTa11A.2.20.001689
S1162P1162LcCacTa11A.60.005128
S1162P1162LcCacTa11AY.100.00053
S1162P1162LcCacTa11AY.1010.00049
S1162P1162LcCacTa11AY.1050.000643
S1162P1162LcCacTa11AY.1080.001103
S1162P1162LcCacTa11AY.1090.00074
S1162P1162LcCacTa11AY.120.000316
S1162P1162LcCacTa11AY.190.00114
S1162P1162LcCacTa11AY.210.001898
S1162P1162LcCacTa11AY.23.10.000417
S1162P1162LcCacTa11AY.320.000532
S1162P1162LcCacTa11AY.39.10.00004
S1162P1162LcCacTa11AY.4.10.000737
S1162P1162LcCacTa11AY.46.20.000635
S1162P1162LcCacTa11AY.46.40.000165
S1162P1162LcCacTa11AY.560.001605
S1162P1162LcCacTa11AY.580.000907
S1162P1162LcCacTa11AY.650.000533
S1162P1162LcCacTa11AY.720.001361
S1162P1162LcCacTa11AY.730.000665
S1162P1162LcCacTa11AY.80.000606
S1162P1162LcCacTa11AY.800.001129
S1162P1162LcCacTa11AY.850.000427
S1162P1162LcCacTa11AY.9.20.000037
S1162P1162LcCacTa11AY.900.000684
S1162P1162LcCacTa11B.1.1.10.000327
S1162P1162LcCacTa11B.1.1.270.00565
S1162P1162LcCacTa11B.1.1.2940.001266
S1162P1162LcCacTa11B.1.1.3000.010753
S1162P1162LcCacTa11B.1.1.3020.002075
S1162P1162LcCacTa11B.1.1.3060.000438
S1162P1162LcCacTa11B.1.1.3110.000358
S1162P1162LcCacTa11B.1.1.3290.003846
S1162P1162LcCacTa11B.1.1.330.000421
S1162P1162LcCacTa11B.1.1.370.000193
S1162P1162LcCacTa11B.1.1.3720.000689
S1162P1162LcCacTa11B.1.1.3890.006061
S1162P1162LcCacTa11B.1.1.3960.045455
S1162P1162LcCacTa11B.1.1.3970.002252
S1162P1162LcCacTa11B.1.1.4170.002703
S1162P1162LcCacTa11B.1.1.5260.003546
S1162P1162LcCacTa11B.1.1.980.018519
S1162P1162LcCacTa11B.1.1120.005181
S1162P1162LcCacTa11B.1.1180.006711
S1162P1162LcCacTa11B.1.160.220.006757
S1162P1162LcCacTa11B.1.160.80.001289
S1162P1162LcCacTa11B.1.1660.008475
S1162P1162LcCacTa11B.1.177.150.000631
S1162P1162LcCacTa11B.1.177.570.000281
S1162P1162LcCacTa11B.1.177.650.000665
S1162P1162LcCacTa11B.1.177.750.001041
S1162P1162LcCacTa11B.1.177.790.002342
S1162P1162LcCacTa11B.1.177.80.000752
S1162P1162LcCacTa11B.1.177.820.000477
S1162P1162LcCacTa11B.1.1810.019608
S1162P1162LcCacTa11B.1.258.170.000104
S1162P1162LcCacTa11B.1.2790.000514
S1162P1162LcCacTa11B.1.30.002618
S1162P1162LcCacTa11B.1.3110.000275
S1162P1162LcCacTa11B.1.3190.003049
S1162P1162LcCacTa11B.1.3240.001605
S1162P1162LcCacTa11B.1.3320.003497
S1162P1162LcCacTa11B.1.3360.002439
S1162P1162LcCacTa11B.1.3490.000715
S1162P1162LcCacTa11B.1.351.30.000876
S1162P1162LcCacTa11B.1.36.10.00114
S1162P1162LcCacTa11B.1.36.180.00042
S1162P1162LcCacTa11B.1.36.210.00216
S1162P1162LcCacTa11B.1.36.220.001208
S1162P1162LcCacTa11B.1.36.270.000763
S1162P1162LcCacTa11B.1.36.380.001642
S1162P1162LcCacTa11B.1.36.80.001
S1162P1162LcCacTa11B.1.3610.001289
S1162P1162LcCacTa11B.1.3670.000792
S1162P1162LcCacTa11B.1.3750.00082
S1162P1162LcCacTa11B.1.3770.004566
S1162P1162LcCacTa11B.1.3970.004854
S1162P1162LcCacTa11B.1.4530.003236
S1162P1162LcCacTa11B.1.4690.00361
S1162P1162LcCacTa11B.1.4740.001901
S1162P1162LcCacTa11B.1.4970.000315
S1162P1162LcCacTa11B.1.5030.002488
S1162P1162LcCacTa11B.1.5110.034483
S1162P1162LcCacTa11B.1.5370.02
S1162P1162LcCacTa11B.1.5440.006024
S1162P1162LcCacTa11B.1.5450.014493
S1162P1162LcCacTa11B.1.5510.00129
S1162P1162LcCacTa11B.1.5580.004566
S1162P1162LcCacTa11B.1.5640.000426
S1162P1162LcCacTa11B.1.5880.00091
S1162P1162LcCacTa11B.1.6090.000479
S1162P1162LcCacTa11B.1.6230.000536
S1162P1162LcCacTa11B.1.6370.000073
S1162P1162LcCacTa11B.1.930.000934
S1162P1162LcCacTa11B.3.10.001658
S1162P1162LcCacTa11B.6.60.000889
S1162P1162LcCacTa11C.350.000774
S1162P1162LcCacTa11C.80.004464
S1162P1162LcCacTa11P.1.40.000977
S1162P1162LcCacTa11P.1.60.001946
S1162P1162LcCacTa11P.30.001595
S1162P1162LcCacTa11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.