CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1158

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1158N1158NsynaaTaaC591591125034-25036
S1158N1158deldelAAT---107107125034-25036
S1158N1158DnonsynAatGat59580.98305125034-25036
S1158N1158DnonsynAaTGaC5910.016949225034-25036
S1158N1158SnonsynaAtaGt42410.9761925034-25036
S1158N1158SnonsynaATaGC4210.023809525034-25036
S1158N1158KnonsynaaTaaG1370.53846225034-25036
S1158N1158KnonsynaaTaaA1360.46153825034-25036
S1158N1158HnonsynAatCat1212125034-25036
S1158N1158TnonsynaAtaCt1212125034-25036
S1158N1158YnonsynAatTat1111125034-25036
S1158N1158InonsynaAtaTt55125034-25036
S1158N1158GnonsynAATGGC210.525034-25036
S1158N1158GnonsynAAtGGt210.525034-25036
S1158N1158del2delaATa--11125034-25036
S1158N1158EnonsynAaTGaG11125034-25036
S1158N1158del1delAat-at11125034-25036

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1158N1158NaaTaaC591591All0.000113
S1158N1158NaaTaaC145145B.1.1.70.00013
S1158N1158delAAT---107107All0.00002
S1158N1158NaaTaaC8383AY.40.000129
S1158N1158NaaTaaC8282AY.1030.000509
S1158N1158NaaTaaC7777B.1.5180.905882
S1158N1158DAatGat5859All0.000011
S1158N1158DAaTGaC159All0
S1158N1158delAAT---5050B.1.1.70.000045
S1158N1158SaAtaGt4142All0.000008
S1158N1158SaATaGC142All0
S1158N1158NaaTaaC2626AY.30.000259
S1158N1158DAatGat2121AY.440.000128
S1158N1158NaaTaaC1515B.1.617.20.000056
S1158N1158KaaTaaG713All0.000001
S1158N1158KaaTaaA613All0.000001
S1158N1158TaAtaCt1212All0.000002
S1158N1158HAatCat1212All0.000002
S1158N1158NaaTaaC1212P.10.000189
S1158N1158YAatTat1111All0.000002
S1158N1158NaaTaaC1111AY.260.000311
S1158N1158SaAtaGt1010B.1.1.70.000009
S1158N1158NaaTaaC99AY.1160.002581
S1158N1158DAatGat99AY.1210.001218
S1158N1158NaaTaaC88AY.46.40.001316
S1158N1158delAAT---88B.1.1770.000105
S1158N1158NaaTaaC77AY.1020.000186
S1158N1158NaaTaaC77AY.250.000042
S1158N1158delAAT---77AY.40.000011
S1158N1158SaAtaGt66AY.40.000009
S1158N1158IaAtaTt55All0.000001
S1158N1158NaaTaaC55AY.390.000124
S1158N1158NaaTaaC55AY.4.20.000108
S1158N1158delAAT---55AY.4.50.000537
S1158N1158KaaTaaA55AY.99.20.000461
S1158N1158NaaTaaC55B.1.1770.000066
S1158N1158NaaTaaC55B.1.4080.01845
S1158N1158NaaTaaC44AY.220.008368
S1158N1158SaAtaGt44AY.430.000018
S1158N1158NaaTaaC44AY.440.000024
S1158N1158NaaTaaC44B.1.10.000073
S1158N1158NaaTaaC44B.1.20.000035
S1158N1158NaaTaaC44B.1.5960.000349
S1158N1158NaaTaaC44Q.30.00058
S1158N1158NaaTaaC33AE.80.001467
S1158N1158TaAtaCt33AY.40.000005
S1158N1158HAatCat33AY.440.000018
S1158N1158NaaTaaC33B.10.000027
S1158N1158DAatGat33B.1.1.70.000003
S1158N1158DAatGat33B.1.1770.00004
S1158N1158SaAtaGt33B.1.20.000026
S1158N1158NaaTaaC33B.1.2580.0002
S1158N1158NaaTaaC33C.370.000348
S1158N1158NaaTaaC33D.20.000225
S1158N1158NaaTaaC33P.30.004785
S1158N1158SaATaGC120.055556
S1158N1158DAaTGaC120.055556
S1158N1158GAAtGGt120.055556
S1158N1158DAatGat120.055556
S1158N1158GAATGGC120.055556
S1158N1158SaAtaGt120.055556
S1158N1158GAAtGGt12All0
S1158N1158GAATGGC12All0
S1158N1158DAatGat22AY.1030.000012
S1158N1158NaaTaaC22AY.1100.000225
S1158N1158delAAT---22AY.1110.000366
S1158N1158NaaTaaC22AY.1140.000462
S1158N1158delAAT---22AY.1200.000074
S1158N1158delAAT---22AY.190.002281
S1158N1158DAatGat22AY.30.00002
S1158N1158NaaTaaC22AY.3.10.000171
S1158N1158DAatGat22AY.40.000003
S1158N1158delAAT---22AY.430.000009
S1158N1158NaaTaaC22AY.430.000009
S1158N1158NaaTaaC22AY.50.000041
S1158N1158KaaTaaG22AY.50.000041
S1158N1158DAatGat22AY.90.000135
S1158N1158YAatTat22B.1.10.000036
S1158N1158HAatCat22B.1.1.2320.00363
S1158N1158HAatCat22B.1.1.70.000002
S1158N1158TaAtaCt22B.1.1.70.000002
S1158N1158SaAtaGt22B.1.1600.000062
S1158N1158TaAtaCt22B.1.20.000018
S1158N1158NaaTaaC22B.1.2410.001623
S1158N1158NaaTaaC22B.1.2430.000139
S1158N1158NaaTaaC22B.1.4290.000047
S1158N1158NaaTaaC22B.1.5260.000047
S1158N1158DAatGat22B.1.617.20.000008
S1158N1158NaaTaaC22B.1.6210.000177
S1158N1158NaaTaaC110.055556
S1158N1158NaaTaaC11A.280.002646
S1158N1158SaAtaGt11AE.60.038462
S1158N1158EAaTGaG11All0
S1158N1158del1Aat-at11All0
S1158N1158del2aATa--11All0
S1158N1158SaAtaGt11AY.1030.000006
S1158N1158KaaTaaA11AY.1030.000006
S1158N1158NaaTaaC11AY.1050.000643
S1158N1158DAatGat11AY.1160.000287
S1158N1158DAatGat11AY.1170.000085
S1158N1158delAAT---11AY.1180.000063
S1158N1158TaAtaCt11AY.1190.000035
S1158N1158SaAtaGt11AY.1200.000037
S1158N1158IaAtaTt11AY.140.000088
S1158N1158NaaTaaC11AY.140.000088
S1158N1158NaaTaaC11AY.200.000039
S1158N1158DAatGat11AY.260.000028
S1158N1158KaaTaaG11AY.270.000065
S1158N1158SaAtaGt11AY.290.000016
S1158N1158NaaTaaC11AY.290.000016
S1158N1158TaAtaCt11AY.290.000016
S1158N1158YAatTat11AY.30.00001
S1158N1158TaAtaCt11AY.30.00001
S1158N1158delAAT---11AY.300.000396
S1158N1158EAaTGaG11AY.320.000532
S1158N1158IaAtaTt11AY.340.000097
S1158N1158SaAtaGt11AY.340.000097
S1158N1158SaAtaGt11AY.34.10.00051
S1158N1158SaAtaGt11AY.390.000025
S1158N1158SaAtaGt11AY.39.10.00004
S1158N1158NaaTaaC11AY.39.10.00004
S1158N1158YAatTat11AY.40.000002
S1158N1158IaAtaTt11AY.40.000002
S1158N1158HAatCat11AY.40.000002
S1158N1158del2aATa--11AY.40.000002
S1158N1158DAatGat11AY.430.000004
S1158N1158HAatCat11AY.430.000004
S1158N1158YAatTat11AY.440.000006
S1158N1158DAatGat11AY.450.000122
S1158N1158NaaTaaC11AY.460.000104
S1158N1158DAatGat11AY.460.000104
S1158N1158DAatGat11AY.50.000021
S1158N1158delAAT---11AY.50.000021
S1158N1158NaaTaaC11AY.510.000909
S1158N1158SaAtaGt11AY.540.000095
S1158N1158YAatTat11AY.550.000917
S1158N1158NaaTaaC11AY.590.00053
S1158N1158KaaTaaG11AY.590.00053
S1158N1158delAAT---11AY.60.000041
S1158N1158delAAT---11AY.600.000938
S1158N1158DAatGat11AY.670.000464
S1158N1158delAAT---11AY.70.000196
S1158N1158YAatTat11AY.740.000116
S1158N1158IaAtaTt11AY.750.000056
S1158N1158NaaTaaC11AY.75.10.00018
S1158N1158delAAT---11AY.810.001992
S1158N1158delAAT---11AY.850.000427
S1158N1158HAatCat11AY.90.000068
S1158N1158delAAT---11AY.90.000068
S1158N1158delAAT---11AY.9.20.000037
S1158N1158NaaTaaC11AY.980.000079
S1158N1158SaAtaGt11AY.98.10.000048
S1158N1158YAatTat11AY.99.20.000092
S1158N1158KaaTaaG11B.10.000009
S1158N1158del1Aat-at11B.10.000009
S1158N1158SaAtaGt11B.10.000009
S1158N1158YAatTat11B.10.000009
S1158N1158delAAT---11B.10.000009
S1158N1158delAAT---11B.1.1.1590.004673
S1158N1158YAatTat11B.1.1.1870.00885
S1158N1158NaaTaaC11B.1.1.2140.000055
S1158N1158delAAT---11B.1.1.2360.006897
S1158N1158NaaTaaC11B.1.1.2770.000759
S1158N1158NaaTaaC11B.1.1.2840.000107
S1158N1158NaaTaaC11B.1.1.370.000193
S1158N1158IaAtaTt11B.1.1.5190.00004
S1158N1158delAAT---11B.1.160.230.004831
S1158N1158TaAtaCt11B.1.1770.000013
S1158N1158delAAT---11B.1.177.170.000821
S1158N1158delAAT---11B.1.177.210.000076
S1158N1158NaaTaaC11B.1.177.380.010417
S1158N1158SaAtaGt11B.1.177.40.000211
S1158N1158delAAT---11B.1.177.40.000211
S1158N1158delAAT---11B.1.177.480.003125
S1158N1158delAAT---11B.1.177.540.000606
S1158N1158delAAT---11B.1.177.600.000218
S1158N1158delAAT---11B.1.177.690.001484
S1158N1158SaAtaGt11B.1.177.800.001912
S1158N1158delAAT---11B.1.177.90.001332
S1158N1158DAatGat11B.1.20.000009
S1158N1158HAatCat11B.1.20.000009
S1158N1158NaaTaaC11B.1.2120.016667
S1158N1158delAAT---11B.1.221.10.002907
S1158N1158KaaTaaG11B.1.2220.001692
S1158N1158TaAtaCt11B.1.2430.00007
S1158N1158HAatCat11B.1.258.70.001912
S1158N1158NaaTaaC11B.1.3510.00003
S1158N1158DAatGat11B.1.3510.00003
S1158N1158SaAtaGt11B.1.360.000146
S1158N1158NaaTaaC11B.1.3690.000285
S1158N1158NaaTaaC11B.1.4090.000781
S1158N1158NaaTaaC11B.1.5270.003704
S1158N1158DAatGat11B.1.5580.004566
S1158N1158delAAT---11B.1.617.20.000004
S1158N1158YAatTat11B.1.617.20.000004
S1158N1158NaaTaaC11B.1.6180.004032
S1158N1158NaaTaaC11B.290.003509
S1158N1158NaaTaaC11B.30.000831
S1158N1158delAAT---11C.170.055556
S1158N1158delAAT---11C.370.000116
S1158N1158delAAT---11P.10.000016
S1158N1158SaAtaGt11P.10.000016
S1158N1158NaaTaaC11P.1.100.000269
S1158N1158KaaTaaG11P.1.120.000484
S1158N1158delAAT---11P.1.150.000232
S1158N1158NaaTaaC11P.1.20.001156
S1158N1158delAAT---11U.30.003861