CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1153

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1153D1153YnonsynGatTat447944780.99977725019-25021
S1153D1153YnonsynGaTTaC447910.00022326425019-25021
S1153D1153DsyngaTgaC379379125019-25021
S1153D1153GnonsyngAtgGt184184125019-25021
S1153D1153AnonsyngAtgCt1741730.99425325019-25021
S1153D1153AnonsyngATgCC17410.0057471325019-25021
S1153D1153deldelGAT---101101125019-25021
S1153D1153HnonsynGatCat9696125019-25021
S1153D1153NnonsynGatAat8080125019-25021
S1153D1153VnonsyngAtgTt42410.9761925019-25021
S1153D1153VnonsyngATgTC4210.023809525019-25021
S1153D1153EnonsyngaTgaA99125019-25021
S1153D1153del2delgATg--540.825019-25021
S1153D1153del1delgaTga-530.625019-25021
S1153D1153del1delgAtg-t510.225019-25021
S1153D1153del2delGATA--510.225019-25021
S1153D1153del1delGat-at510.225019-25021
S1153D1153SnonsynGATTCC210.525019-25021
S1153D1153SnonsynGAtTCt210.525019-25021
S1153D1153CnonsynGAtTGt11125019-25021

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1153D1153YGatTat44784479All0.000856
S1153D1153YGaTTaC14479All0
S1153D1153YGatTat580580B.1.617.10.0748
S1153D1153YGatTat573573AY.40.000892
S1153D1153YGatTat541541B.1.20.004764
S1153D1153YGatTat471471AY.190.537058
S1153D1153DgaTgaC379379All0.000072
S1153D1153YGatTat313313B.1.1.70.00028
S1153D1153YGatTat236236AY.250.001419
S1153D1153GgAtgGt184184All0.000035
S1153D1153AgAtgCt173174All0.000033
S1153D1153AgATgCC1174All0
S1153D1153YGatTat171171AY.430.000758
S1153D1153YGatTat169169AY.1030.001049
S1153D1153YGatTat137137P.10.002158
S1153D1153YGatTat108108AY.940.047809
S1153D1153AgAtgCt106106B.1.1.70.000095
S1153D1153delGAT---101101All0.000019
S1153D1153YGatTat9999AY.440.000603
S1153D1153HGatCat9696All0.000018
S1153D1153YGatTat8181AY.200.003148
S1153D1153NGatAat8080All0.000015
S1153D1153YGatTat7878AY.700.016264
S1153D1153YGatTat6464AY.290.00101
S1153D1153YGatTat6161B.1.617.20.00023
S1153D1153DgaTgaC6060AY.40.000093
S1153D1153YGatTat5252B.10.000476
S1153D1153DgaTgaC5252B.1.1.70.000047
S1153D1153YGatTat4949B.1.6210.004337
S1153D1153delGAT---4848B.1.1.70.000043
S1153D1153DgaTgaC4646B.1.20.000405
S1153D1153YGatTat4545AY.1000.00207
S1153D1153VgAtgTt4142All0.000008
S1153D1153VgATgTC142All0
S1153D1153DgaTgaC3535AY.900.023956
S1153D1153YGatTat3434AY.30.000338
S1153D1153DgaTgaC3333B.1.617.20.000124
S1153D1153YGatTat2828AY.9.10.002344
S1153D1153NGatAat2727B.1.4270.001363
S1153D1153YGatTat2626AY.390.000642
S1153D1153GgAtgGt2323AY.40.000036
S1153D1153YGatTat2121AY.420.000845
S1153D1153YGatTat2121AY.98.10.001017
S1153D1153YGatTat2020AY.9.20.000735
S1153D1153NGatAat1919B.1.1.70.000017
S1153D1153YGatTat1919C.380.153226
S1153D1153YGatTat1818A.23.10.012676
S1153D1153GgAtgGt1818AY.1030.000112
S1153D1153VgAtgTt1818AY.1030.000112
S1153D1153YGatTat1717B.1.1.2970.038031
S1153D1153DgaTgaC1616AY.440.000097
S1153D1153YGatTat1616AY.50.00033
S1153D1153YGatTat1616AY.90.001082
S1153D1153YGatTat1515AY.1090.011095
S1153D1153YGatTat1515AY.1180.00094
S1153D1153GgAtgGt1515B.1.1.70.000013
S1153D1153GgAtgGt1414AY.250.000084
S1153D1153HGatCat1414AY.40.000022
S1153D1153GgAtgGt1414B.1.5260.000329
S1153D1153YGatTat1414P.1.140.000669
S1153D1153DgaTgaC1313AY.1020.000345
S1153D1153YGatTat1313B.1.351.20.003933
S1153D1153DgaTgaC1313P.10.000205
S1153D1153HGatCat1212AY.1030.000075
S1153D1153DgaTgaC1212AY.1030.000075
S1153D1153YGatTat1212AY.1200.000446
S1153D1153YGatTat1111AY.4.40.004501
S1153D1153YGatTat1111AY.750.000616
S1153D1153YGatTat1111B.1.10.0002
S1153D1153DgaTgaC1111B.1.1.4200.011066
S1153D1153YGatTat1010AY.240.00431
S1153D1153YGatTat1010AY.470.000311
S1153D1153YGatTat1010B.1.1770.000132
S1153D1153GgAtgGt1010B.1.2340.001319
S1153D1153EgaTgaA99All0.000002
S1153D1153HGatCat99AY.190.010262
S1153D1153AgAtgCt99AY.200.00035
S1153D1153GgAtgGt99AY.440.000055
S1153D1153HGatCat99B.1.617.20.000034
S1153D1153DgaTgaC88AY.1000.000368
S1153D1153YGatTat88AY.260.000226
S1153D1153YGatTat88AY.330.000534
S1153D1153YGatTat88AY.4.20.000174
S1153D1153GgAtgGt88AY.430.000035
S1153D1153AgAtgCt88AY.440.000049
S1153D1153YGatTat88AY.46.60.000578
S1153D1153delGAT---88B.1.1770.000105
S1153D1153DgaTgaC77AY.250.000042
S1153D1153delGAT---77AY.40.000011
S1153D1153YGatTat77B.1.5960.00061
S1153D1153GgAtgGt77B.1.617.20.000026
S1153D1153YGatTat77P.1.10.002224
S1153D1153YGatTat66AY.130.000966
S1153D1153YGatTat66AY.20.002137
S1153D1153YGatTat66AY.230.000418
S1153D1153HGatCat66AY.250.000036
S1153D1153GgAtgGt66AY.30.00006
S1153D1153VgAtgTt66AY.40.000009
S1153D1153HGatCat66AY.430.000027
S1153D1153YGatTat66AY.5.30.002024
S1153D1153YGatTat66B.1.1.330.002525
S1153D1153YGatTat66B.1.5250.000679
S1153D1153EgaTgaA66B.1.617.20.000023
S1153D1153YGatTat66B.1.6200.005676
S1153D1153GgAtgGt55A.23.10.003521
S1153D1153del2gATg--45All0.000001
S1153D1153del1gaTga-35All0.000001
S1153D1153del2GATA--15All0
S1153D1153del1gAtg-t15All0
S1153D1153del1Gat-at15All0
S1153D1153YGatTat55AY.1190.000177
S1153D1153YGatTat55AY.1210.000677
S1153D1153YGatTat55AY.140.00044
S1153D1153YGatTat55AY.4.30.004209
S1153D1153delGAT---55AY.4.50.000537
S1153D1153HGatCat55AY.440.00003
S1153D1153NGatAat55B.10.000046
S1153D1153DgaTgaC55B.1.1.2220.00102
S1153D1153AgAtgCt55B.1.1.280.001556
S1153D1153HGatCat55B.1.1.70.000004
S1153D1153GgAtgGt55B.1.20.000044
S1153D1153DgaTgaC55B.1.2400.001078
S1153D1153AgAtgCt55P.10.000079
S1153D1153GgAtgGt44AB.10.032787
S1153D1153GgAtgGt44AD.20.000876
S1153D1153YGatTat44AY.10.001583
S1153D1153YGatTat44AY.160.001519
S1153D1153YGatTat44AY.270.000259
S1153D1153NGatAat44AY.40.000006
S1153D1153YGatTat44AY.60.000165
S1153D1153VgAtgTt44AY.720.005442
S1153D1153YGatTat44AY.99.20.000369
S1153D1153AgAtgCt44B.10.000037
S1153D1153YGatTat44B.1.1.280.001245
S1153D1153YGatTat44B.1.1.3180.001207
S1153D1153AgAtgCt44B.1.177.600.000874
S1153D1153GgAtgGt44B.1.3690.001141
S1153D1153YGatTat44C.370.000464
S1153D1153YGatTat44D.20.0003
S1153D1153YGatTat44P.1.170.000647
S1153D1153YGatTat230.111111
S1153D1153YGaTTaC130.055556
S1153D1153YGatTat33AY.1060.001005
S1153D1153DgaTgaC33AY.1100.000338
S1153D1153NGatAat33AY.1130.000427
S1153D1153YGatTat33AY.1170.000254
S1153D1153DgaTgaC33AY.1200.000112
S1153D1153delGAT---33AY.190.003421
S1153D1153NGatAat33AY.250.000018
S1153D1153YGatTat33AY.29.10.000662
S1153D1153YGatTat33AY.300.001187
S1153D1153DgaTgaC33AY.430.000013
S1153D1153YGatTat33AY.450.000365
S1153D1153AgAtgCt33AY.550.002752
S1153D1153YGatTat33AY.710.001425
S1153D1153YGatTat33B0.000383
S1153D1153AgAtgCt33B.1.10.000054
S1153D1153GgAtgGt33B.1.1.2140.000166
S1153D1153GgAtgGt33B.1.2580.0002
S1153D1153YGatTat33B.1.415.10.022727
S1153D1153DgaTgaC33B.1.4290.000071
S1153D1153DgaTgaC33B.1.5250.000339
S1153D1153YGatTat33B.1.5260.000071
S1153D1153NGatAat33P.1.100.000808
S1153D1153YGatTat33P.1.70.000958
S1153D1153YGatTat33P.1.80.014354
S1153D1153NGatAat220.111111
S1153D1153AgAtgCt120.055556
S1153D1153AgATgCC120.055556
S1153D1153SGAtTCt120.055556
S1153D1153SGATTCC120.055556
S1153D1153DgaTgaC22A.2.5.20.003145
S1153D1153YGatTat22A.250.036364
S1153D1153SGATTCC12All0
S1153D1153SGAtTCt12All0
S1153D1153YGatTat22AY.1010.000981
S1153D1153delGAT---22AY.1110.000366
S1153D1153YGatTat22AY.1130.000285
S1153D1153DgaTgaC22AY.1140.000462
S1153D1153HGatCat22AY.1170.000169
S1153D1153delGAT---22AY.1200.000074
S1153D1153DgaTgaC22AY.1210.000271
S1153D1153VgAtgTt22AY.250.000012
S1153D1153DgaTgaC22AY.290.000032
S1153D1153NGatAat22AY.30.00002
S1153D1153HGatCat22AY.320.001065
S1153D1153YGatTat22AY.340.000194
S1153D1153YGatTat22AY.370.000632
S1153D1153HGatCat22AY.39.10.000079
S1153D1153DgaTgaC22AY.39.10.000079
S1153D1153AgAtgCt22AY.40.000003
S1153D1153AgAtgCt22AY.430.000009
S1153D1153delGAT---22AY.430.000009
S1153D1153DgaTgaC22AY.460.000208
S1153D1153YGatTat22AY.460.000208
S1153D1153YGatTat22AY.46.30.001867
S1153D1153DgaTgaC22AY.46.40.000329
S1153D1153GgAtgGt22AY.470.000062
S1153D1153GgAtgGt22AY.50.000041
S1153D1153YGatTat22AY.580.001815
S1153D1153HGatCat22AY.610.00021
S1153D1153YGatTat22AY.650.001066
S1153D1153YGatTat22AY.660.002139
S1153D1153DgaTgaC22AY.670.000929
S1153D1153YGatTat22AY.70.000392
S1153D1153HGatCat22AY.7.10.000225
S1153D1153HGatCat22AY.870.001665
S1153D1153GgAtgGt22B.10.000018
S1153D1153DgaTgaC22B.10.000018
S1153D1153del2gATg--12B.10.000009
S1153D1153del2GATA--12B.10.000009
S1153D1153DgaTgaC22B.1.10.000036
S1153D1153DgaTgaC22B.1.1.5190.000079
S1153D1153GgAtgGt22B.1.1770.000026
S1153D1153VgAtgTt22B.1.1770.000026
S1153D1153HGatCat22B.1.20.000018
S1153D1153AgAtgCt22B.1.2430.000139
S1153D1153NGatAat22B.1.3110.000549
S1153D1153YGatTat22B.1.3510.000059
S1153D1153YGatTat22B.1.36.210.00432
S1153D1153YGatTat22B.1.5670.006667
S1153D1153AgAtgCt22B.1.617.20.000008
S1153D1153DgaTgaC22B.1.930.001867
S1153D1153GgAtgGt22B.60.00182
S1153D1153AgAtgCt22C.350.001548
S1153D1153HGatCat22P.1.70.000639
S1153D1153YGatTat22P.30.00319
S1153D1153YGatTat22U.20.017544
S1153D1153DgaTgaC110.055556
S1153D1153HGatCat110.055556
S1153D1153AgAtgCt11A0.000387
S1153D1153YGatTat11A.190.009434
S1153D1153YGatTat11A.2.20.001689
S1153D1153YGatTat11A.210.00277
S1153D1153YGatTat11A.50.001923
S1153D1153CGAtTGt11All0
S1153D1153GgAtgGt11AY.1000.000046
S1153D1153DgaTgaC11AY.1010.00049
S1153D1153NGatAat11AY.1030.000006
S1153D1153AgAtgCt11AY.1030.000006
S1153D1153GgAtgGt11AY.1070.000466
S1153D1153YGatTat11AY.1080.001103
S1153D1153YGatTat11AY.110.001339
S1153D1153GgAtgGt11AY.1170.000085
S1153D1153DgaTgaC11AY.1170.000085
S1153D1153delGAT---11AY.1180.000063
S1153D1153DgaTgaC11AY.1190.000035
S1153D1153YGatTat11AY.120.10.000321
S1153D1153HGatCat11AY.16.10.00047
S1153D1153NGatAat11AY.200.000039
S1153D1153GgAtgGt11AY.230.00007
S1153D1153HGatCat11AY.240.000431
S1153D1153AgAtgCt11AY.250.000006
S1153D1153GgAtgGt11AY.260.000028
S1153D1153DgaTgaC11AY.260.000028
S1153D1153HGatCat11AY.260.000028
S1153D1153NGatAat11AY.260.000028
S1153D1153GgAtgGt11AY.270.000065
S1153D1153AgAtgCt11AY.290.000016
S1153D1153DgaTgaC11AY.29.10.000221
S1153D1153YGatTat11AY.3.10.000085
S1153D1153DgaTgaC11AY.300.000396
S1153D1153DgaTgaC11AY.330.000067
S1153D1153GgAtgGt11AY.340.000097
S1153D1153GgAtgGt11AY.360.000148
S1153D1153YGatTat11AY.380.000499
S1153D1153DgaTgaC11AY.390.000025
S1153D1153EgaTgaA11AY.390.000025
S1153D1153NGatAat11AY.4.20.000022
S1153D1153HGatCat11AY.4.40.000409
S1153D1153YGatTat11AY.4.50.000107
S1153D1153YGatTat11AY.410.000294
S1153D1153VgAtgTt11AY.430.000004
S1153D1153VgAtgTt11AY.440.000006
S1153D1153del2gATg--11AY.440.000006
S1153D1153DgaTgaC11AY.450.000122
S1153D1153HGatCat11AY.450.000122
S1153D1153YGatTat11AY.46.40.000165
S1153D1153delGAT---11AY.50.000021
S1153D1153YGatTat11AY.5.40.000277
S1153D1153YGatTat11AY.500.000799
S1153D1153YGatTat11AY.520.000814
S1153D1153YGatTat11AY.530.000288
S1153D1153DgaTgaC11AY.590.00053
S1153D1153AgAtgCt11AY.590.00053
S1153D1153GgAtgGt11AY.60.000041
S1153D1153delGAT---11AY.60.000041
S1153D1153delGAT---11AY.600.000938
S1153D1153DgaTgaC11AY.610.000105
S1153D1153YGatTat11AY.620.000436
S1153D1153delGAT---11AY.70.000196
S1153D1153YGatTat11AY.7.10.000113
S1153D1153YGatTat11AY.7.20.000559
S1153D1153GgAtgGt11AY.720.001361
S1153D1153YGatTat11AY.730.000665
S1153D1153YGatTat11AY.740.000116
S1153D1153AgAtgCt11AY.750.000056
S1153D1153YGatTat11AY.75.10.00018
S1153D1153HGatCat11AY.75.10.00018
S1153D1153GgAtgGt11AY.75.10.00018
S1153D1153YGatTat11AY.770.001127
S1153D1153delGAT---11AY.810.001992
S1153D1153CGAtTGt11AY.850.000427
S1153D1153YGatTat11AY.860.00083
S1153D1153YGatTat11AY.870.000833
S1153D1153delGAT---11AY.90.000068
S1153D1153DgaTgaC11AY.9.20.000037
S1153D1153GgAtgGt11AY.9.20.000037
S1153D1153YGatTat11AY.9.2.10.001976
S1153D1153YGatTat11AY.900.000684
S1153D1153YGatTat11AY.930.000273
S1153D1153YGatTat11AY.980.000079
S1153D1153HGatCat11AY.98.10.000048
S1153D1153HGatCat11AY.990.001049
S1153D1153AgAtgCt11AY.99.20.000092
S1153D1153AgAtgCt11B0.000128
S1153D1153EgaTgaA11B0.000128
S1153D1153delGAT---11B.10.000009
S1153D1153VgAtgTt11B.10.000009
S1153D1153del1gaTga-11B.10.000009
S1153D1153HGatCat11B.1.10.000018
S1153D1153GgAtgGt11B.1.10.000018
S1153D1153NGatAat11B.1.10.000018
S1153D1153YGatTat11B.1.1.10.000327
S1153D1153HGatCat11B.1.1.1530.001095
S1153D1153delGAT---11B.1.1.1590.004673
S1153D1153YGatTat11B.1.1.1810.004545
S1153D1153GgAtgGt11B.1.1.1980.001468
S1153D1153AgAtgCt11B.1.1.2140.000055
S1153D1153delGAT---11B.1.1.2360.006897
S1153D1153YGatTat11B.1.1.2410.00207
S1153D1153YGatTat11B.1.1.2910.000742
S1153D1153GgAtgGt11B.1.1.3480.000796
S1153D1153YGatTat11B.1.1.3650.005587
S1153D1153YGatTat11B.1.1.3690.000446
S1153D1153VgAtgTt11B.1.1.370.000193
S1153D1153DgaTgaC11B.1.1.3740.002375
S1153D1153AgAtgCt11B.1.1.40.002976
S1153D1153DgaTgaC11B.1.1.4320.001266
S1153D1153YGatTat11B.1.1.4860.001577
S1153D1153VgAtgTt11B.1.1.5140.038462
S1153D1153GgAtgGt11B.1.1.5190.00004
S1153D1153NGatAat11B.1.1.5190.00004
S1153D1153YGatTat11B.1.1.5190.00004
S1153D1153YGatTat11B.1.1.630.000386
S1153D1153VgAtgTt11B.1.1.70.000001
S1153D1153YGatTat11B.1.1180.006711
S1153D1153YGatTat11B.1.1490.003425
S1153D1153YGatTat11B.1.1600.000031
S1153D1153NGatAat11B.1.1600.000031
S1153D1153del1Gat-at11B.1.1600.000031
S1153D1153delGAT---11B.1.160.230.004831
S1153D1153GgAtgGt11B.1.177.120.000152
S1153D1153delGAT---11B.1.177.170.000821
S1153D1153delGAT---11B.1.177.210.000076
S1153D1153GgAtgGt11B.1.177.40.000211
S1153D1153delGAT---11B.1.177.40.000211
S1153D1153VgAtgTt11B.1.177.440.000519
S1153D1153delGAT---11B.1.177.480.003125
S1153D1153del1gaTga-11B.1.177.540.000606
S1153D1153del1gaTga-11B.1.177.600.000218
S1153D1153delGAT---11B.1.177.690.001484
S1153D1153YGatTat11B.1.177.80.000752
S1153D1153YGatTat11B.1.177.820.000477
S1153D1153delGAT---11B.1.177.90.001332
S1153D1153AgAtgCt11B.1.20.000009
S1153D1153EgaTgaA11B.1.20.000009
S1153D1153del2gATg--11B.1.20.000009
S1153D1153YGatTat11B.1.2140.003663
S1153D1153YGatTat11B.1.2210.000071
S1153D1153delGAT---11B.1.221.10.002907
S1153D1153YGatTat11B.1.2410.000812
S1153D1153YGatTat11B.1.2430.00007
S1153D1153DgaTgaC11B.1.2430.00007
S1153D1153delGAT---11B.1.2580.000067
S1153D1153VgAtgTt11B.1.2580.000067
S1153D1153HGatCat11B.1.2580.000067
S1153D1153DgaTgaC11B.1.2580.000067
S1153D1153YGatTat11B.1.2580.000067
S1153D1153HGatCat11B.1.258.170.000104
S1153D1153AgAtgCt11B.1.2980.002114
S1153D1153GgAtgGt11B.1.3110.000275
S1153D1153DgaTgaC11B.1.3110.000275
S1153D1153del1gAtg-t11B.1.360.000146
S1153D1153DgaTgaC11B.1.36.160.001425
S1153D1153YGatTat11B.1.36.290.000517
S1153D1153YGatTat11B.1.36.310.001751
S1153D1153YGatTat11B.1.36.80.001
S1153D1153YGatTat11B.1.3620.001541
S1153D1153YGatTat11B.1.3970.004854
S1153D1153AgAtgCt11B.1.4150.014286
S1153D1153DgaTgaC11B.1.4270.00005
S1153D1153GgAtgGt11B.1.4710.002732
S1153D1153NGatAat11B.1.5260.000024
S1153D1153DgaTgaC11B.1.5260.000024
S1153D1153YGatTat11B.1.575.10.002439
S1153D1153YGatTat11B.1.5800.004065
S1153D1153VgAtgTt11B.1.5950.000261
S1153D1153del2gATg--11B.1.5950.000261
S1153D1153AgAtgCt11B.1.5990.00365
S1153D1153YGatTat11B.1.6090.000479
S1153D1153delGAT---11B.1.617.20.000004
S1153D1153HGatCat11B.1.619.10.000641
S1153D1153DgaTgaC11B.1.6210.000089
S1153D1153YGatTat11B.1.621.10.000506
S1153D1153DgaTgaC11B.1.621.10.000506
S1153D1153YGatTat11B.1.6280.000352
S1153D1153YGatTat11B.1.6370.000073
S1153D1153YGatTat11C.1.20.004255
S1153D1153VgATgTC11C.170.055556
S1153D1153DgaTgaC11C.36.30.000567
S1153D1153GgAtgGt11C.370.000116
S1153D1153delGAT---11C.370.000116
S1153D1153NGatAat11P.10.000016
S1153D1153delGAT---11P.10.000016
S1153D1153YGatTat11P.1.120.000484
S1153D1153AgAtgCt11P.1.120.000484
S1153D1153GgAtgGt11P.1.140.000048
S1153D1153YGatTat11P.1.150.000232
S1153D1153delGAT---11P.1.150.000232
S1153D1153YGatTat11P.1.160.000374
S1153D1153YGatTat11P.1.20.001156
S1153D1153NGatAat11P.20.000187
S1153D1153YGatTat11Q.30.000145
S1153D1153YGatTat11Q.80.000165
S1153D1153YGatTat11R.10.00009
S1153D1153delGAT---11U.30.003861