CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1152

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1152L1152LsynttAttG13687960.58187125016-25018
S1152L1152LsynTtaCta13685720.41812925016-25018
S1152L1152deldelTTA---100100125016-25018
S1152L1152FnonsynttAttT35220.62857125016-25018
S1152L1152FnonsynttAttC35130.37142925016-25018
S1152L1152SnonsyntTatCa860.7525016-25018
S1152L1152SnonsyntTAtCG820.2525016-25018
S1152L1152del1delttAtt-430.7525016-25018
S1152L1152del1delTta-ta410.2525016-25018
S1152L1152del2delTTa--a22125016-25018
S1152L1152MnonsynTtAAtG22125016-25018
S1152L1152InonsynTtaAta22125016-25018
S1152L1152TnonsynTTaACa210.525016-25018
S1152L1152TnonsynTTAACG210.525016-25018
S1152L1152AnonsynTTAGCG11125016-25018
S1152L1152XnonsyntTatAa11125016-25018

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1152L1152LttAttG7961368All0.000152
S1152L1152LTtaCta5721368All0.000109
S1152L1152LttAttG477480AY.250.002869
S1152L1152LTtaCta3480AY.250.000018
S1152L1152LTtaCta213403AY.40.000332
S1152L1152LttAttG190403AY.40.000296
S1152L1152LTtaCta214214B.1.4480.56168
S1152L1152delTTA---100100All0.000019
S1152L1152LTtaCta8686AY.39.10.003407
S1152L1152delTTA---4848B.1.1.70.000043
S1152L1152FttAttT2235All0.000004
S1152L1152FttAttC1335All0.000002
S1152L1152LTtaCta1930B.1.617.20.000072
S1152L1152LttAttG1130B.1.617.20.000041
S1152L1152LttAttG1421B.1.1.70.000013
S1152L1152LTtaCta721B.1.1.70.000006
S1152L1152LttAttG2121B.1.160.300.0625
S1152L1152LttAttG911B.10.000082
S1152L1152LTtaCta211B.10.000018
S1152L1152LttAttG99B.1.1.5190.000357
S1152L1152StTatCa68All0.000001
S1152L1152StTAtCG28All0
S1152L1152FttAttT88AY.4.2.10.001192
S1152L1152delTTA---88B.1.1770.000105
S1152L1152LttAttG47AY.30.00004
S1152L1152LTtaCta37AY.30.00003
S1152L1152delTTA---77AY.40.000011
S1152L1152FttAttC77AY.610.000733
S1152L1152FttAttT66B.1.2430.000418
S1152L1152LttAttG45AY.1030.000025
S1152L1152LTtaCta15AY.1030.000006
S1152L1152delTTA---55AY.4.50.000537
S1152L1152LttAttG45AY.440.000024
S1152L1152LTtaCta15AY.440.000006
S1152L1152LTtaCta45B.1.3690.001141
S1152L1152LttAttG15B.1.3690.000285
S1152L1152del1ttAtt-34All0.000001
S1152L1152del1Tta-ta14All0
S1152L1152LttAttG44B.1.1600.000125
S1152L1152LttAttG44P.10.000063
S1152L1152LttAttG33AY.120.10.000963
S1152L1152delTTA---33AY.190.003421
S1152L1152LttAttG33AY.230.000209
S1152L1152LttAttG23AY.430.000009
S1152L1152LTtaCta13AY.430.000004
S1152L1152LttAttG33AY.99.20.000276
S1152L1152FttAttT33B.10.000027
S1152L1152FttAttC33B.1.617.20.000011
S1152L1152StTatCa120.055556
S1152L1152TTTAACG120.055556
S1152L1152TTTaACa120.055556
S1152L1152StTAtCG120.055556
S1152L1152ITtaAta22All0
S1152L1152MTtAAtG22All0
S1152L1152del2TTa--a22All0
S1152L1152TTTAACG12All0
S1152L1152TTTaACa12All0
S1152L1152delTTA---22AY.1110.000366
S1152L1152delTTA---22AY.1200.000074
S1152L1152LttAttG22AY.1200.000074
S1152L1152LTtaCta12AY.260.000028
S1152L1152LttAttG12AY.260.000028
S1152L1152LTtaCta12AY.420.00004
S1152L1152LttAttG12AY.420.00004
S1152L1152delTTA---22AY.430.000009
S1152L1152LTtaCta22AY.46.40.000329
S1152L1152LTtaCta22AY.850.000854
S1152L1152LTtaCta22AY.90.000135
S1152L1152del1Tta-ta12B.1.1.70.000001
S1152L1152del1ttAtt-12B.1.1.70.000001
S1152L1152LttAttG22B.1.160.140.004237
S1152L1152LttAttG22B.1.1770.000026
S1152L1152LttAttG12B.1.20.000009
S1152L1152LTtaCta12B.1.20.000009
S1152L1152LttAttG22B.1.2580.000133
S1152L1152LTtaCta22B.1.4270.000101
S1152L1152LttAttG22C.370.000232
S1152L1152ITtaAta110.055556
S1152L1152FttAttT110.055556
S1152L1152LttAttG110.055556
S1152L1152MTtAAtG110.055556
S1152L1152ATTAGCG11All0
S1152L1152XtTatAa11All0
S1152L1152FttAttC11AY.100.00053
S1152L1152FttAttT11AY.1100.000113
S1152L1152LttAttG11AY.1130.000142
S1152L1152LttAttG11AY.1170.000085
S1152L1152delTTA---11AY.1180.000063
S1152L1152FttAttC11AY.1190.000035
S1152L1152LttAttG11AY.140.000088
S1152L1152LTtaCta11AY.200.000039
S1152L1152FttAttT11AY.230.00007
S1152L1152FttAttT11AY.250.000006
S1152L1152LttAttG11AY.290.000016
S1152L1152LttAttG11AY.3.10.000085
S1152L1152StTatCa11AY.300.000396
S1152L1152LttAttG11AY.340.000097
S1152L1152LttAttG11AY.360.000148
S1152L1152LttAttG11AY.390.000025
S1152L1152LttAttG11AY.4.20.000022
S1152L1152FttAttC11AY.440.000006
S1152L1152LTtaCta11AY.46.60.000072
S1152L1152delTTA---11AY.50.000021
S1152L1152delTTA---11AY.60.000041
S1152L1152LttAttG11AY.60.000041
S1152L1152delTTA---11AY.600.000938
S1152L1152LTtaCta11AY.620.000436
S1152L1152delTTA---11AY.70.000196
S1152L1152LttAttG11AY.7.20.000559
S1152L1152LttAttG11AY.750.000056
S1152L1152delTTA---11AY.810.001992
S1152L1152StTAtCG11AY.850.000427
S1152L1152delTTA---11AY.90.000068
S1152L1152LTtaCta11AY.9.20.000037
S1152L1152LttAttG11B0.000128
S1152L1152StTatCa11B.10.000009
S1152L1152delTTA---11B.10.000009
S1152L1152StTatCa11B.1.10.000018
S1152L1152delTTA---11B.1.1.1590.004673
S1152L1152delTTA---11B.1.1.2360.006897
S1152L1152XtTatAa11B.1.1.280.000311
S1152L1152LTtaCta11B.1.1.3110.000358
S1152L1152MTtAAtG11B.1.1.70.000001
S1152L1152del2TTa--a11B.1.1.70.000001
S1152L1152del1ttAtt-11B.1.1600.000031
S1152L1152delTTA---11B.1.160.230.004831
S1152L1152ITtaAta11B.1.1770.000013
S1152L1152delTTA---11B.1.177.170.000821
S1152L1152LttAttG11B.1.177.200.001517
S1152L1152delTTA---11B.1.177.210.000076
S1152L1152delTTA---11B.1.177.40.000211
S1152L1152del1ttAtt-11B.1.177.480.003125
S1152L1152del2TTa--a11B.1.177.580.001332
S1152L1152delTTA---11B.1.177.690.001484
S1152L1152delTTA---11B.1.177.90.001332
S1152L1152LttAttG11B.1.2100.002132
S1152L1152delTTA---11B.1.221.10.002907
S1152L1152StTatCa11B.1.2430.00007
S1152L1152delTTA---11B.1.2580.000067
S1152L1152LTtaCta11B.1.3510.00003
S1152L1152FttAttT11B.1.4290.000024
S1152L1152LttAttG11B.1.4590.004082
S1152L1152delTTA---11B.1.617.20.000004
S1152L1152LttAttG11C.160.00106
S1152L1152ATTAGCG11C.170.055556
S1152L1152delTTA---11C.370.000116
S1152L1152LttAttG11D.20.000075
S1152L1152StTatCa11D.20.000075
S1152L1152LttAttG11L.30.003546
S1152L1152delTTA---11P.10.000016
S1152L1152delTTA---11P.1.150.000232
S1152L1152LTtaCta11P.20.000187
S1152L1152delTTA---11U.30.003861