CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1147 & Codon = tTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1147S1147LnonsyntCatTa7587470.98548825001-25003

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1147S1147LtCatTa747758All0.000143
S1147S1147LtCatTa132132B.1.1.70.000118
S1147S1147LtCatTa101101B.1.1.2980.087069
S1147S1147LtCatTa8686AY.40.000134
S1147S1147LtCatTa4848B.1.2430.00334
S1147S1147LtCatTa3535B.1.20.000308
S1147S1147LtCatTa2828AY.250.000168
S1147S1147LtCatTa2323B.10.000211
S1147S1147LtCatTa1818AY.430.00008
S1147S1147LtCatTa1818B.1.351.20.005446
S1147S1147LtCatTa1313AY.30.000129
S1147S1147LtCatTa1112B.1.617.20.000041
S1147S1147LtCatTa4110.222222
S1147S1147LtCatTa1010B.1.10.000181
S1147S1147LtCatTa99B.1.1770.000119
S1147S1147LtCatTa99B.1.3510.000268
S1147S1147LtCatTa88AY.1030.00005
S1147S1147LtCatTa77AY.9.20.000257
S1147S1147LtCatTa57B.1.2210.000355
S1147S1147LtCatTa66AY.440.000037
S1147S1147LtCatTa66B.1.5260.000141
S1147S1147LtCatTa66B.390.013986
S1147S1147LtCatTa55AY.60.000206
S1147S1147LtCatTa55AZ.10.004337
S1147S1147LtCatTa55B.1.2340.00066
S1147S1147LtCatTa55P.10.000079
S1147S1147LtCatTa44AY.330.000267
S1147S1147LtCatTa44AY.4.20.000087
S1147S1147LtCatTa44B.1.1.370.000771
S1147S1147LtCatTa44B.1.1.5190.000159
S1147S1147LtCatTa44B.1.1600.000125
S1147S1147LtCatTa44B.1.4290.000094
S1147S1147LtCatTa44B.1.6210.000354
S1147S1147LtCatTa33AY.470.000093
S1147S1147LtCatTa23B0.000256
S1147S1147LtCatTa33B.1.5250.000339
S1147S1147LtCatTa33B.1.6370.000219
S1147S1147LtCatTa33C.370.000348
S1147S1147LtCatTa33N.60.021277
S1147S1147LtCatTa33W.40.004054
S1147S1147LtCatTa22AY.200.000078
S1147S1147LtCatTa22AY.230.000139
S1147S1147LtCatTa22AY.290.000032
S1147S1147LtCatTa22AY.390.000049
S1147S1147LtCatTa22AY.50.000041
S1147S1147LtCatTa22AY.510.001818
S1147S1147LtCatTa22AY.70.000392
S1147S1147LtCatTa22AY.740.000231
S1147S1147LtCatTa22AY.750.000112
S1147S1147LtCatTa22AY.99.20.000184
S1147S1147LtCatTa22B.1.1.10.000653
S1147S1147LtCatTa22B.1.1.1760.000879
S1147S1147LtCatTa22B.1.1.2140.000111
S1147S1147LtCatTa22B.1.1.2220.000408
S1147S1147LtCatTa22B.1.177.860.000367
S1147S1147LtCatTa22B.1.4000.000858
S1147S1147LtCatTa22B.1.4270.000101
S1147S1147LtCatTa22B.1.6090.000959
S1147S1147LtCatTa11A.20.000662
S1147S1147LtCatTa11AD.20.000219
S1147S1147LtCatTa11AY.1000.000046
S1147S1147LtCatTa11AY.1020.000027
S1147S1147LtCatTa11AY.1100.000113
S1147S1147LtCatTa11AY.1110.000183
S1147S1147LtCatTa11AY.1130.000142
S1147S1147LtCatTa11AY.116.10.000311
S1147S1147LtCatTa11AY.1190.000035
S1147S1147LtCatTa11AY.1200.000037
S1147S1147LtCatTa11AY.270.000065
S1147S1147LtCatTa11AY.3.10.000085
S1147S1147LtCatTa11AY.340.000097
S1147S1147LtCatTa11AY.370.000316
S1147S1147LtCatTa11AY.4.40.000409
S1147S1147LtCatTa11AY.4.50.000107
S1147S1147LtCatTa11AY.400.000964
S1147S1147LtCatTa11AY.420.00004
S1147S1147LtCatTa11AY.460.000104
S1147S1147LtCatTa11AY.5.30.000337
S1147S1147LtCatTa11AY.520.000814
S1147S1147LtCatTa11AY.7.10.000113
S1147S1147LtCatTa11AY.800.001129
S1147S1147LtCatTa11AY.90.000068
S1147S1147LtCatTa11AY.980.000079
S1147S1147LtCatTa11B.1.1.1610.003534
S1147S1147LtCatTa11B.1.1.2630.001558
S1147S1147LtCatTa11B.1.1.2840.000107
S1147S1147LtCatTa11B.1.1.2850.006536
S1147S1147LtCatTa11B.1.1.3180.000302
S1147S1147LtCatTa11B.1.1.3360.016667
S1147S1147LtCatTa11B.1.1.3710.010417
S1147S1147LtCatTa11B.1.1.3780.007299
S1147S1147LtCatTa11B.1.1.4060.006494
S1147S1147LtCatTa11B.1.1.500.000679
S1147S1147LtCatTa11B.1.130.002375
S1147S1147LtCatTa11B.1.160.70.002079
S1147S1147LtCatTa11B.1.177.460.000918
S1147S1147LtCatTa11B.1.177.620.001192
S1147S1147LtCatTa11B.1.177.70.000165
S1147S1147LtCatTa11B.1.177.770.000726
S1147S1147LtCatTa11B.1.177.810.000189
S1147S1147LtCatTa11B.1.2100.002132
S1147S1147LtCatTa11B.1.2320.000537
S1147S1147LtCatTa11B.1.2580.000067
S1147S1147LtCatTa11B.1.3380.008621
S1147S1147LtCatTa11B.1.36.100.004785
S1147S1147LtCatTa11B.1.36.160.001425
S1147S1147LtCatTa11B.1.36.280.005747
S1147S1147LtCatTa11B.1.36.80.001
S1147S1147LtCatTa11B.1.3980.002976
S1147S1147LtCatTa11B.1.5170.000427
S1147S1147LtCatTa11B.1.5640.000426
S1147S1147LtCatTa11B.1.6120.002653
S1147S1147LtCatTa11B.1.617.10.000129
S1147S1147LtCatTa11B.400.000364
S1147S1147LtCatTa11B.6.60.000889
S1147S1147LtCatTa11D.30.005917
S1147S1147LtCatTa11P.1.170.000162
S1147S1147LtCatTa11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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