CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1147 | S1147L | nonsyn | tCa | tTa | 758 | 747 | 0.985488 | 25001-25003 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1147 | S1147L | tCa | tTa | 747 | 758 | All | 0.000143 |
S | 1147 | S1147L | tCa | tTa | 132 | 132 | B.1.1.7 | 0.000118 |
S | 1147 | S1147L | tCa | tTa | 101 | 101 | B.1.1.298 | 0.087069 |
S | 1147 | S1147L | tCa | tTa | 86 | 86 | AY.4 | 0.000134 |
S | 1147 | S1147L | tCa | tTa | 48 | 48 | B.1.243 | 0.00334 |
S | 1147 | S1147L | tCa | tTa | 35 | 35 | B.1.2 | 0.000308 |
S | 1147 | S1147L | tCa | tTa | 28 | 28 | AY.25 | 0.000168 |
S | 1147 | S1147L | tCa | tTa | 23 | 23 | B.1 | 0.000211 |
S | 1147 | S1147L | tCa | tTa | 18 | 18 | AY.43 | 0.00008 |
S | 1147 | S1147L | tCa | tTa | 18 | 18 | B.1.351.2 | 0.005446 |
S | 1147 | S1147L | tCa | tTa | 13 | 13 | AY.3 | 0.000129 |
S | 1147 | S1147L | tCa | tTa | 11 | 12 | B.1.617.2 | 0.000041 |
S | 1147 | S1147L | tCa | tTa | 4 | 11 | 0.222222 | |
S | 1147 | S1147L | tCa | tTa | 10 | 10 | B.1.1 | 0.000181 |
S | 1147 | S1147L | tCa | tTa | 9 | 9 | B.1.177 | 0.000119 |
S | 1147 | S1147L | tCa | tTa | 9 | 9 | B.1.351 | 0.000268 |
S | 1147 | S1147L | tCa | tTa | 8 | 8 | AY.103 | 0.00005 |
S | 1147 | S1147L | tCa | tTa | 7 | 7 | AY.9.2 | 0.000257 |
S | 1147 | S1147L | tCa | tTa | 5 | 7 | B.1.221 | 0.000355 |
S | 1147 | S1147L | tCa | tTa | 6 | 6 | AY.44 | 0.000037 |
S | 1147 | S1147L | tCa | tTa | 6 | 6 | B.1.526 | 0.000141 |
S | 1147 | S1147L | tCa | tTa | 6 | 6 | B.39 | 0.013986 |
S | 1147 | S1147L | tCa | tTa | 5 | 5 | AY.6 | 0.000206 |
S | 1147 | S1147L | tCa | tTa | 5 | 5 | AZ.1 | 0.004337 |
S | 1147 | S1147L | tCa | tTa | 5 | 5 | B.1.234 | 0.00066 |
S | 1147 | S1147L | tCa | tTa | 5 | 5 | P.1 | 0.000079 |
S | 1147 | S1147L | tCa | tTa | 4 | 4 | AY.33 | 0.000267 |
S | 1147 | S1147L | tCa | tTa | 4 | 4 | AY.4.2 | 0.000087 |
S | 1147 | S1147L | tCa | tTa | 4 | 4 | B.1.1.37 | 0.000771 |
S | 1147 | S1147L | tCa | tTa | 4 | 4 | B.1.1.519 | 0.000159 |
S | 1147 | S1147L | tCa | tTa | 4 | 4 | B.1.160 | 0.000125 |
S | 1147 | S1147L | tCa | tTa | 4 | 4 | B.1.429 | 0.000094 |
S | 1147 | S1147L | tCa | tTa | 4 | 4 | B.1.621 | 0.000354 |
S | 1147 | S1147L | tCa | tTa | 3 | 3 | AY.47 | 0.000093 |
S | 1147 | S1147L | tCa | tTa | 2 | 3 | B | 0.000256 |
S | 1147 | S1147L | tCa | tTa | 3 | 3 | B.1.525 | 0.000339 |
S | 1147 | S1147L | tCa | tTa | 3 | 3 | B.1.637 | 0.000219 |
S | 1147 | S1147L | tCa | tTa | 3 | 3 | C.37 | 0.000348 |
S | 1147 | S1147L | tCa | tTa | 3 | 3 | N.6 | 0.021277 |
S | 1147 | S1147L | tCa | tTa | 3 | 3 | W.4 | 0.004054 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.20 | 0.000078 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.23 | 0.000139 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.29 | 0.000032 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.39 | 0.000049 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.5 | 0.000041 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.51 | 0.001818 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.7 | 0.000392 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.74 | 0.000231 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.75 | 0.000112 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | AY.99.2 | 0.000184 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.1.1 | 0.000653 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.1.176 | 0.000879 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.1.214 | 0.000111 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.1.222 | 0.000408 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.177.86 | 0.000367 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.400 | 0.000858 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.427 | 0.000101 |
S | 1147 | S1147L | tCa | tTa | 2 | 2 | B.1.609 | 0.000959 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | A.2 | 0.000662 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AD.2 | 0.000219 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.100 | 0.000046 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.102 | 0.000027 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.110 | 0.000113 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.111 | 0.000183 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.113 | 0.000142 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.116.1 | 0.000311 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.119 | 0.000035 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.120 | 0.000037 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.27 | 0.000065 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.3.1 | 0.000085 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.34 | 0.000097 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.37 | 0.000316 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.4.4 | 0.000409 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.4.5 | 0.000107 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.40 | 0.000964 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.42 | 0.00004 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.46 | 0.000104 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.5.3 | 0.000337 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.52 | 0.000814 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.7.1 | 0.000113 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.80 | 0.001129 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.9 | 0.000068 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | AY.98 | 0.000079 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.161 | 0.003534 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.263 | 0.001558 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.284 | 0.000107 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.285 | 0.006536 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.318 | 0.000302 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.336 | 0.016667 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.371 | 0.010417 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.378 | 0.007299 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.406 | 0.006494 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.1.50 | 0.000679 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.13 | 0.002375 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.160.7 | 0.002079 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.177.46 | 0.000918 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.177.62 | 0.001192 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.177.77 | 0.000726 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.177.81 | 0.000189 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.210 | 0.002132 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.232 | 0.000537 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.258 | 0.000067 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.338 | 0.008621 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.36.10 | 0.004785 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.36.16 | 0.001425 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.36.28 | 0.005747 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.36.8 | 0.001 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.398 | 0.002976 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.517 | 0.000427 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.564 | 0.000426 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.612 | 0.002653 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.40 | 0.000364 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | B.6.6 | 0.000889 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | D.3 | 0.005917 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | P.1.17 | 0.000162 |
S | 1147 | S1147L | tCa | tTa | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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