CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1147

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1147S1147SsyntcAtcG31143307950.98882625001-25003
S1147S1147SsyntcAtcT311433040.0097614225001-25003
S1147S1147SsyntcAtcC31143440.0014128425001-25003
S1147S1147LnonsyntCatTa7587470.98548825001-25003
S1147S1147LnonsynTCaCTa75850.0065963125001-25003
S1147S1147LnonsynTCACTT75820.0026385225001-25003
S1147S1147LnonsynTCACTG75820.0026385225001-25003
S1147S1147LnonsynTCACTC75810.0013192625001-25003
S1147S1147LnonsyntCAtTG75810.0013192625001-25003
S1147S1147PnonsynTcaCca36320.88888925001-25003
S1147S1147PnonsynTcACcT3620.055555625001-25003
S1147S1147PnonsynTcACcC3610.027777825001-25003
S1147S1147PnonsynTcACcG3610.027777825001-25003
S1147S1147AnonsynTcaGca3434125001-25003
S1147S1147deldelTCA---3131125001-25003
S1147S1147TnonsynTcaAca17110.64705925001-25003
S1147S1147TnonsynTcAAcT1750.29411825001-25003
S1147S1147TnonsynTcAAcC1710.058823525001-25003
S1147S1147InonsynTCaATa840.525001-25003
S1147S1147InonsynTCAATT830.37525001-25003
S1147S1147InonsynTCAATC810.12525001-25003
S1147S1147XnonsyntCatAa55125001-25003
S1147S1147del2deltCAt--540.825001-25003
S1147S1147FnonsyntCAtTT530.625001-25003
S1147S1147FnonsyntCAtTC520.425001-25003
S1147S1147del2delTCA--G510.225001-25003
S1147S1147del1deltCat-a310.33333325001-25003
S1147S1147del1delTca-ca310.33333325001-25003
S1147S1147del1deltcAtc-310.33333325001-25003
S1147S1147HnonsynTCACAT11125001-25003
S1147S1147RnonsynTCaAGa11125001-25003

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1147S1147StcAtcG3079531143All0.00589
S1147S1147StcAtcT30431143All0.000058
S1147S1147StcAtcC4431143All0.000008
S1147S1147StcAtcG2405424083AY.1200.8943
S1147S1147StcAtcT1624083AY.1200.000595
S1147S1147StcAtcC1324083AY.1200.000483
S1147S1147StcAtcG30163016AY.120.10.968218
S1147S1147StcAtcG19952005AY.120.2.10.994021
S1147S1147StcAtcT102005AY.120.2.10.004983
S1147S1147StcAtcG774774AY.120.20.994859
S1147S1147LtCatTa747758All0.000143
S1147S1147LTCaCTa5758All0.000001
S1147S1147LTCACTG2758All0
S1147S1147LTCACTT2758All0
S1147S1147LtCAtTG1758All0
S1147S1147LTCACTC1758All0
S1147S1147StcAtcG387414B.1.617.20.001457
S1147S1147StcAtcT19414B.1.617.20.000072
S1147S1147StcAtcC8414B.1.617.20.00003
S1147S1147StcAtcG174180AY.40.000271
S1147S1147StcAtcT6180AY.40.000009
S1147S1147StcAtcT134134B.1.258.170.013932
S1147S1147LtCatTa132132B.1.1.70.000118
S1147S1147StcAtcG113130B.1.1.70.000101
S1147S1147StcAtcT16130B.1.1.70.000014
S1147S1147StcAtcC1130B.1.1.70.000001
S1147S1147LtCatTa101101B.1.1.2980.087069
S1147S1147LtCatTa8686AY.40.000134
S1147S1147StcAtcG5355B.1.10.000961
S1147S1147StcAtcC155B.1.10.000018
S1147S1147StcAtcT155B.1.10.000018
S1147S1147StcAtcG5252B.1.1.4671
S1147S1147LtCatTa4848B.1.2430.00334
S1147S1147PTcaCca3236All0.000006
S1147S1147PTcACcT236All0
S1147S1147PTcACcC136All0
S1147S1147PTcACcG136All0
S1147S1147LtCatTa3535B.1.20.000308
S1147S1147ATcaGca3434All0.000007
S1147S1147delTCA---3131All0.000006
S1147S1147StcAtcG1829AY.1030.000112
S1147S1147StcAtcT1129AY.1030.000068
S1147S1147LtCatTa2828AY.250.000168
S1147S1147StcAtcG1725AY.440.000103
S1147S1147StcAtcT825AY.440.000049
S1147S1147LtCatTa2323B.10.000211
S1147S1147StcAtcT1122AY.430.000049
S1147S1147StcAtcG1022AY.430.000044
S1147S1147StcAtcC122AY.430.000004
S1147S1147StcAtcG1818AY.1020.000477
S1147S1147LtCatTa1818AY.430.00008
S1147S1147LtCatTa1818B.1.351.20.005446
S1147S1147TTcaAca1117All0.000002
S1147S1147TTcAAcT517All0.000001
S1147S1147TTcAAcC117All0
S1147S1147StcAtcG1717B.1.1.510.02921
S1147S1147PTcaCca1616AY.690.002987
S1147S1147StcAtcT1213AY.250.000072
S1147S1147StcAtcG113AY.250.000006
S1147S1147LtCatTa1313AY.30.000129
S1147S1147StcAtcG1313AY.4.50.001397
S1147S1147LtCatTa1112B.1.617.20.000041
S1147S1147LTCACTG112B.1.617.20.000004
S1147S1147LtCatTa4110.222222
S1147S1147LTCaCTa3110.166667
S1147S1147LTCACTT2110.111111
S1147S1147LTCACTG1110.055556
S1147S1147LtCAtTG1110.055556
S1147S1147StcAtcT1010AY.100.005299
S1147S1147LtCatTa1010B.1.10.000181
S1147S1147StcAtcG69AY.390.000148
S1147S1147StcAtcT39AY.390.000074
S1147S1147StcAtcG99AY.460.000937
S1147S1147delTCA---99B.1.1.70.000008
S1147S1147LtCatTa99B.1.1770.000119
S1147S1147LtCatTa99B.1.3510.000268
S1147S1147TTcaAca480.222222
S1147S1147TTcAAcT380.166667
S1147S1147TTcAAcC180.055556
S1147S1147ITCaATa48All0.000001
S1147S1147ITCAATT38All0.000001
S1147S1147ITCAATC18All0
S1147S1147LtCatTa88AY.1030.00005
S1147S1147StcAtcG88B.1.1600.00025
S1147S1147StcAtcG77AY.1060.002344
S1147S1147StcAtcC77AY.690.001307
S1147S1147LtCatTa77AY.9.20.000257
S1147S1147StcAtcT37B.10.000027
S1147S1147StcAtcC27B.10.000018
S1147S1147StcAtcG27B.10.000018
S1147S1147LtCatTa57B.1.2210.000355
S1147S1147LTCACTC17B.1.2210.000071
S1147S1147LTCaCTa17B.1.2210.000071
S1147S1147ITCaATa360.166667
S1147S1147PTcaCca360.166667
S1147S1147ITCAATT260.111111
S1147S1147PTcACcT260.111111
S1147S1147ITCAATC160.055556
S1147S1147PTcACcG160.055556
S1147S1147StcAtcT46AY.4.20.000087
S1147S1147StcAtcG26AY.4.20.000043
S1147S1147LtCatTa66AY.440.000037
S1147S1147StcAtcG66AY.99.20.000553
S1147S1147LtCatTa66B.1.5260.000141
S1147S1147LtCatTa66B.390.013986
S1147S1147StcAtcT350.166667
S1147S1147StcAtcG150.055556
S1147S1147StcAtcC150.055556
S1147S1147XtCatAa55All0.000001
S1147S1147del2tCAt--45All0.000001
S1147S1147FtCAtTT35All0.000001
S1147S1147FtCAtTC25All0
S1147S1147del2TCA--G15All0
S1147S1147StcAtcT45AY.1180.000251
S1147S1147StcAtcG15AY.1180.000063
S1147S1147ATcaGca55AY.30.00005
S1147S1147StcAtcC35AY.30.00003
S1147S1147StcAtcT25AY.30.00002
S1147S1147ATcaGca55AY.390.000124
S1147S1147StcAtcG55AY.46.10.005133
S1147S1147LtCatTa55AY.60.000206
S1147S1147LtCatTa55AZ.10.004337
S1147S1147LtCatTa55B.1.2340.00066
S1147S1147LtCatTa55P.10.000079
S1147S1147PTcaCca44AA.10.028986
S1147S1147LtCatTa44AY.330.000267
S1147S1147LtCatTa44AY.4.20.000087
S1147S1147LtCatTa44B.1.1.370.000771
S1147S1147LtCatTa44B.1.1.5190.000159
S1147S1147LtCatTa44B.1.1600.000125
S1147S1147LtCatTa44B.1.4290.000094
S1147S1147PTcaCca44B.1.617.20.000015
S1147S1147LtCatTa44B.1.6210.000354
S1147S1147StcAtcG24P.10.000032
S1147S1147StcAtcT24P.10.000032
S1147S1147FtCAtTT230.111111
S1147S1147FtCAtTC130.055556
S1147S1147del1tcAtc-13All0
S1147S1147del1Tca-ca13All0
S1147S1147del1tCat-a13All0
S1147S1147StcAtcG33AY.230.000209
S1147S1147ATcaGca33AY.250.000018
S1147S1147ATcaGca33AY.260.000085
S1147S1147delTCA---33AY.40.000005
S1147S1147delTCA---33AY.4.50.000322
S1147S1147LtCatTa33AY.470.000093
S1147S1147StcAtcG33AY.540.000286
S1147S1147LtCatTa23B0.000256
S1147S1147LTCaCTa13B0.000128
S1147S1147ATcaGca33B.1.1.70.000003
S1147S1147ATcaGca33B.1.20.000026
S1147S1147StcAtcT23B.1.2210.000142
S1147S1147StcAtcC13B.1.2210.000071
S1147S1147StcAtcG23B.1.360.000292
S1147S1147StcAtcT13B.1.360.000146
S1147S1147ATcaGca33B.1.438.10.000322
S1147S1147LtCatTa33B.1.5250.000339
S1147S1147StcAtcT33B.1.5250.000339
S1147S1147StcAtcG33B.1.6210.000266
S1147S1147LtCatTa33B.1.6370.000219
S1147S1147LtCatTa33C.370.000348
S1147S1147LtCatTa33N.60.021277
S1147S1147LtCatTa33W.40.004054
S1147S1147StcAtcG22AY.1100.000225
S1147S1147StcAtcT12AY.1170.000085
S1147S1147StcAtcG12AY.1170.000085
S1147S1147delTCA---22AY.1200.000074
S1147S1147StcAtcC22AY.140.000176
S1147S1147LtCatTa22AY.200.000078
S1147S1147ATcaGca22AY.200.000078
S1147S1147LtCatTa22AY.230.000139
S1147S1147LtCatTa22AY.290.000032
S1147S1147StcAtcG12AY.330.000067
S1147S1147StcAtcT12AY.330.000067
S1147S1147LtCatTa22AY.390.000049
S1147S1147PTcaCca22AY.440.000012
S1147S1147StcAtcT12AY.470.000031
S1147S1147StcAtcG12AY.470.000031
S1147S1147StcAtcG22AY.50.000041
S1147S1147LtCatTa22AY.50.000041
S1147S1147LtCatTa22AY.510.001818
S1147S1147LtCatTa22AY.70.000392
S1147S1147LtCatTa22AY.740.000231
S1147S1147LtCatTa22AY.750.000112
S1147S1147StcAtcT22AY.75.10.000361
S1147S1147StcAtcT22AY.9.10.000167
S1147S1147LtCatTa22AY.99.20.000184
S1147S1147XtCatAa22B.10.000018
S1147S1147PTcaCca22B.1.10.000036
S1147S1147LtCatTa22B.1.1.10.000653
S1147S1147LtCatTa22B.1.1.1760.000879
S1147S1147LtCatTa22B.1.1.2140.000111
S1147S1147LtCatTa22B.1.1.2220.000408
S1147S1147TTcaAca12B.1.1.70.000001
S1147S1147TTcAAcT12B.1.1.70.000001
S1147S1147delTCA---22B.1.1770.000026
S1147S1147StcAtcC22B.1.1770.000026
S1147S1147LtCatTa22B.1.177.860.000367
S1147S1147StcAtcG12B.1.20.000009
S1147S1147StcAtcT12B.1.20.000009
S1147S1147PTcaCca12B.1.2210.000071
S1147S1147TTcaAca12B.1.2210.000071
S1147S1147FtCAtTT12B.1.2210.000071
S1147S1147PTcACcC12B.1.2210.000071
S1147S1147ITCaATa12B.1.2210.000071
S1147S1147FtCAtTC12B.1.2210.000071
S1147S1147ITCAATT12B.1.2210.000071
S1147S1147TTcAAcT12B.1.2210.000071
S1147S1147StcAtcT22B.1.2580.000133
S1147S1147LtCatTa22B.1.4000.000858
S1147S1147LtCatTa22B.1.4270.000101
S1147S1147ATcaGca22B.1.4290.000047
S1147S1147LtCatTa22B.1.6090.000959
S1147S1147LtCatTa11A.20.000662
S1147S1147StcAtcT11A.2.50.000499
S1147S1147StcAtcG11A.23.10.000704
S1147S1147LtCatTa11AD.20.000219
S1147S1147HTCACAT11All0
S1147S1147RTCaAGa11All0
S1147S1147LtCatTa11AY.1000.000046
S1147S1147LtCatTa11AY.1020.000027
S1147S1147ATcaGca11AY.1030.000006
S1147S1147LtCatTa11AY.1100.000113
S1147S1147delTCA---11AY.1110.000183
S1147S1147del2tCAt--11AY.1110.000183
S1147S1147LtCatTa11AY.1110.000183
S1147S1147LtCatTa11AY.1130.000142
S1147S1147StcAtcG11AY.1160.000287
S1147S1147LtCatTa11AY.116.10.000311
S1147S1147delTCA---11AY.1180.000063
S1147S1147LtCatTa11AY.1190.000035
S1147S1147StcAtcT11AY.1190.000035
S1147S1147LtCatTa11AY.1200.000037
S1147S1147XtCatAa11AY.16.10.00047
S1147S1147StcAtcT11AY.200.000039
S1147S1147LtCatTa11AY.270.000065
S1147S1147TTcaAca11AY.290.000016
S1147S1147StcAtcT11AY.290.000016
S1147S1147LtCatTa11AY.3.10.000085
S1147S1147LtCatTa11AY.340.000097
S1147S1147LtCatTa11AY.370.000316
S1147S1147ATcaGca11AY.40.000002
S1147S1147LtCatTa11AY.4.40.000409
S1147S1147LtCatTa11AY.4.50.000107
S1147S1147LtCatTa11AY.400.000964
S1147S1147LtCatTa11AY.420.00004
S1147S1147TTcaAca11AY.430.000004
S1147S1147ATcaGca11AY.440.000006
S1147S1147StcAtcG11AY.450.000122
S1147S1147LtCatTa11AY.460.000104
S1147S1147del1tcAtc-11AY.50.000021
S1147S1147LtCatTa11AY.5.30.000337
S1147S1147StcAtcG11AY.5.40.000277
S1147S1147LtCatTa11AY.520.000814
S1147S1147StcAtcG11AY.60.000041
S1147S1147StcAtcT11AY.610.000105
S1147S1147StcAtcG11AY.680.000274
S1147S1147StcAtcC11AY.70.000196
S1147S1147LtCatTa11AY.7.10.000113
S1147S1147LtCatTa11AY.800.001129
S1147S1147StcAtcT11AY.820.001357
S1147S1147del2TCA--G11AY.850.000427
S1147S1147delTCA---11AY.90.000068
S1147S1147LtCatTa11AY.90.000068
S1147S1147StcAtcG11AY.920.000287
S1147S1147LtCatTa11AY.980.000079
S1147S1147StcAtcG11AY.980.000079
S1147S1147TTcaAca11B.10.000009
S1147S1147TTcaAca11B.1.10.000018
S1147S1147delTCA---11B.1.1.1590.004673
S1147S1147LtCatTa11B.1.1.1610.003534
S1147S1147TTcaAca11B.1.1.2050.003717
S1147S1147delTCA---11B.1.1.2360.006897
S1147S1147LtCatTa11B.1.1.2630.001558
S1147S1147LtCatTa11B.1.1.2840.000107
S1147S1147LtCatTa11B.1.1.2850.006536
S1147S1147LtCatTa11B.1.1.3180.000302
S1147S1147LtCatTa11B.1.1.3360.016667
S1147S1147StcAtcG11B.1.1.3510.002793
S1147S1147delTCA---11B.1.1.370.000193
S1147S1147LtCatTa11B.1.1.3710.010417
S1147S1147LtCatTa11B.1.1.3780.007299
S1147S1147StcAtcT11B.1.1.40.002976
S1147S1147LtCatTa11B.1.1.4060.006494
S1147S1147StcAtcG11B.1.1.4340.000349
S1147S1147LtCatTa11B.1.1.500.000679
S1147S1147HTCACAT11B.1.1.70.000001
S1147S1147del2tCAt--11B.1.1.70.000001
S1147S1147del1Tca-ca11B.1.1.70.000001
S1147S1147XtCatAa11B.1.1.70.000001
S1147S1147LtCatTa11B.1.130.002375
S1147S1147StcAtcT11B.1.1460.004237
S1147S1147LtCatTa11B.1.160.70.002079
S1147S1147del2tCAt--11B.1.1770.000013
S1147S1147StcAtcG11B.1.177.100.000878
S1147S1147StcAtcT11B.1.177.160.000664
S1147S1147StcAtcT11B.1.177.40.000211
S1147S1147LtCatTa11B.1.177.460.000918
S1147S1147LtCatTa11B.1.177.620.001192
S1147S1147LtCatTa11B.1.177.70.000165
S1147S1147StcAtcT11B.1.177.730.000566
S1147S1147LtCatTa11B.1.177.770.000726
S1147S1147LtCatTa11B.1.177.810.000189
S1147S1147del2tCAt--11B.1.20.000009
S1147S1147LtCatTa11B.1.2100.002132
S1147S1147LtCatTa11B.1.2320.000537
S1147S1147LtCatTa11B.1.2580.000067
S1147S1147StcAtcT11B.1.258.110.000396
S1147S1147delTCA---11B.1.3110.000275
S1147S1147LtCatTa11B.1.3380.008621
S1147S1147StcAtcG11B.1.3510.00003
S1147S1147LtCatTa11B.1.36.100.004785
S1147S1147LtCatTa11B.1.36.160.001425
S1147S1147LtCatTa11B.1.36.280.005747
S1147S1147LtCatTa11B.1.36.80.001
S1147S1147StcAtcG11B.1.3670.000792
S1147S1147LtCatTa11B.1.3980.002976
S1147S1147StcAtcC11B.1.4990.00105
S1147S1147LtCatTa11B.1.5170.000427
S1147S1147RTCaAGa11B.1.5250.000113
S1147S1147StcAtcG11B.1.5260.000024
S1147S1147delTCA---11B.1.5610.000397
S1147S1147LtCatTa11B.1.5640.000426
S1147S1147ATcaGca11B.1.5740.002151
S1147S1147del1tCat-a11B.1.5960.000087
S1147S1147ATcaGca11B.1.5990.00365
S1147S1147StcAtcG11B.1.5990.00365
S1147S1147LtCatTa11B.1.6120.002653
S1147S1147LtCatTa11B.1.617.10.000129
S1147S1147XtCatAa11B.1.617.20.000004
S1147S1147StcAtcT11B.1.6370.000073
S1147S1147LtCatTa11B.400.000364
S1147S1147LtCatTa11B.6.60.000889
S1147S1147delTCA---11C.170.055556
S1147S1147delTCA---11C.370.000116
S1147S1147LtCatTa11D.30.005917
S1147S1147delTCA---11P.10.000016
S1147S1147delTCA---11P.1.150.000232
S1147S1147LtCatTa11P.1.170.000162
S1147S1147LtCatTa11Q.40.000455