CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1140

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1140P1140PsynccTccC166513490.8102124980-24982
S1140P1140PsynccTccG16652760.16576624980-24982
S1140P1140PsynccTccA1665400.02402424980-24982
S1140P1140SnonsynCctTct69630.91304324980-24982
S1140P1140SnonsynCcTTcC6940.05797124980-24982
S1140P1140SnonsynCcTTcA6920.028985524980-24982
S1140P1140deldelCCT---2525124980-24982
S1140P1140LnonsyncCtcTt25210.8424980-24982
S1140P1140LnonsyncCTcTA2520.0824980-24982
S1140P1140LnonsynCCTTTA2510.0424980-24982
S1140P1140LnonsyncCTcTC2510.0424980-24982
S1140P1140TnonsynCctAct15130.86666724980-24982
S1140P1140TnonsynCcTAcC1510.066666724980-24982
S1140P1140TnonsynCcTAcA1510.066666724980-24982
S1140P1140del1delccTcc-13100.76923124980-24982
S1140P1140del1delCct-ct1320.15384624980-24982
S1140P1140del1delCcT-cG1310.076923124980-24982
S1140P1140HnonsyncCtcAt1010124980-24982
S1140P1140YnonsynCCtTAt66124980-24982
S1140P1140InonsynCCtATt530.624980-24982
S1140P1140InonsynCCTATC510.224980-24982
S1140P1140InonsynCCTATA510.224980-24982
S1140P1140FnonsynCCtTTt430.7524980-24982
S1140P1140FnonsynCCTTTC410.2524980-24982
S1140P1140RnonsyncCtcGt210.524980-24982
S1140P1140del2delcCTc--210.524980-24982
S1140P1140del2delCCt--t210.524980-24982
S1140P1140RnonsyncCTcGG210.524980-24982
S1140P1140XnonsynCCTTAA11124980-24982
S1140P1140QnonsyncCTcAA11124980-24982
S1140P1140AnonsynCctGct11124980-24982

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1140P1140PccTccC13491665All0.000258
S1140P1140PccTccG2761665All0.000053
S1140P1140PccTccA401665All0.000008
S1140P1140PccTccC988988B.10.00905
S1140P1140PccTccG203215B.1.617.20.000764
S1140P1140PccTccC9215B.1.617.20.000034
S1140P1140PccTccA3215B.1.617.20.000011
S1140P1140SCctTct6369All0.000012
S1140P1140SCcTTcC469All0.000001
S1140P1140SCcTTcA269All0
S1140P1140PccTccC6363B.1.5690.913043
S1140P1140PccTccC6161B.1.5210.303483
S1140P1140PccTccG4343AY.980.003397
S1140P1140PccTccC2831AY.40.000044
S1140P1140PccTccA231AY.40.000003
S1140P1140PccTccG131AY.40.000002
S1140P1140PccTccC2026B.1.1.70.000018
S1140P1140PccTccG426B.1.1.70.000004
S1140P1140PccTccA226B.1.1.70.000002
S1140P1140delCCT---2525All0.000005
S1140P1140LcCtcTt2125All0.000004
S1140P1140LcCTcTA225All0
S1140P1140LCCTTTA125All0
S1140P1140LcCTcTC125All0
S1140P1140PccTccC1919B.1.20.000167
S1140P1140PccTccC1219B.1.5260.000282
S1140P1140PccTccA719B.1.5260.000165
S1140P1140TCctAct1315All0.000002
S1140P1140TCcTAcA115All0
S1140P1140TCcTAcC115All0
S1140P1140del1ccTcc-1013All0.000002
S1140P1140del1Cct-ct213All0
S1140P1140del1CcT-cG113All0
S1140P1140TCctAct1111AY.250.000066
S1140P1140PccTccA1111AY.4.20.000239
S1140P1140HcCtcAt1010All0.000002
S1140P1140PccTccC910AY.1030.000056
S1140P1140PccTccA110AY.1030.000006
S1140P1140PccTccC1010AY.260.000283
S1140P1140PccTccG710AY.30.00007
S1140P1140PccTccC310AY.30.00003
S1140P1140PccTccC810AY.440.000049
S1140P1140PccTccG210AY.440.000012
S1140P1140PccTccC99B.1.760.102273
S1140P1140PccTccC88AY.270.000518
S1140P1140SCctTct77AY.40.000011
S1140P1140LcCtcTt360.166667
S1140P1140LcCTcTA260.111111
S1140P1140LCCTTTA160.055556
S1140P1140PccTccC66AE.80.002934
S1140P1140YCCtTAt66All0.000001
S1140P1140PccTccA36AY.1020.00008
S1140P1140PccTccC36AY.1020.00008
S1140P1140SCctTct66AY.440.000037
S1140P1140PccTccC56B.1.10.000091
S1140P1140PccTccG16B.1.10.000018
S1140P1140SCctTct66B.1.1.70.000005
S1140P1140delCCT---66B.1.1.70.000005
S1140P1140SCctTct350.166667
S1140P1140SCcTTcA250.111111
S1140P1140ICCtATt35All0.000001
S1140P1140ICCTATA15All0
S1140P1140ICCTATC15All0
S1140P1140PccTccG55B.1.360.00073
S1140P1140PccTccC55B.1.438.10.000536
S1140P1140FCCtTTt34All0.000001
S1140P1140FCCTTTC14All0
S1140P1140SCctTct44AY.1030.000025
S1140P1140PccTccC44AY.250.000024
S1140P1140PccTccG34AY.320.001597
S1140P1140PccTccA14AY.320.000532
S1140P1140HcCtcAt44B.10.000037
S1140P1140PccTccC44B.1.1770.000053
S1140P1140PccTccC44B.1.4290.000094
S1140P1140PccTccC44B.1.9.50.022727
S1140P1140PccTccA330.166667
S1140P1140PccTccC23AY.430.000009
S1140P1140PccTccA13AY.430.000004
S1140P1140PccTccC33AY.540.000286
S1140P1140SCctTct33B.10.000027
S1140P1140SCctTct33B.1.10.000054
S1140P1140SCctTct33B.1.20.000026
S1140P1140PccTccC33B.1.2840.039474
S1140P1140PccTccC33B.1.6210.000266
S1140P1140FCCtTTt220.111111
S1140P1140TCcTAcA120.055556
S1140P1140ICCtATt120.055556
S1140P1140ICCTATA120.055556
S1140P1140TCctAct120.055556
S1140P1140del2cCTc--12All0
S1140P1140del2CCt--t12All0
S1140P1140RcCTcGG12All0
S1140P1140RcCtcGt12All0
S1140P1140SCctTct22AU.10.002532
S1140P1140PccTccC22AY.1000.000092
S1140P1140PccTccA22AY.1180.000125
S1140P1140delCCT---22AY.1200.000074
S1140P1140YCCtTAt22AY.40.000003
S1140P1140delCCT---22AY.40.000003
S1140P1140delCCT---22AY.4.50.000215
S1140P1140SCctTct22AY.430.000009
S1140P1140delCCT---22AY.430.000009
S1140P1140PccTccC22AY.450.000243
S1140P1140SCctTct22AY.460.000208
S1140P1140PccTccG12AY.50.000021
S1140P1140PccTccC12AY.50.000021
S1140P1140PccTccC22AY.99.20.000184
S1140P1140LcCtcTt22B.10.000018
S1140P1140del1ccTcc-22B.1.10.000036
S1140P1140PccTccG22B.1.1.1740.006757
S1140P1140PccTccA22B.1.1.3060.000877
S1140P1140PccTccG22B.1.177.810.000379
S1140P1140FCCTTTC12B.1.2210.000071
S1140P1140SCcTTcC12B.1.2210.000071
S1140P1140TCcTAcC12B.1.2210.000071
S1140P1140ICCtATt12B.1.2210.000071
S1140P1140TCctAct12B.1.2210.000071
S1140P1140SCctTct12B.1.2210.000071
S1140P1140LcCTcTC12B.1.2210.000071
S1140P1140FCCtTTt12B.1.2210.000071
S1140P1140LcCtcTt12B.1.2210.000071
S1140P1140ICCTATC12B.1.2210.000071
S1140P1140PccTccC22B.1.2430.000139
S1140P1140PccTccC22B.1.36.80.002
S1140P1140PccTccC22B.1.3960.001411
S1140P1140SCctTct12B.1.5260.000024
S1140P1140SCcTTcC12B.1.5260.000024
S1140P1140SCctTct22B.1.617.20.000008
S1140P1140del1CcT-cG12B.1.617.20.000004
S1140P1140del1ccTcc-12B.1.617.20.000004
S1140P1140del1Cct-ct22B.1.6270.00404
S1140P1140PccTccG12B.30.000831
S1140P1140PccTccC12B.30.000831
S1140P1140LcCtcTt22D.20.00015
S1140P1140PccTccC22D.20.00015
S1140P1140PccTccC22P.10.000032
S1140P1140HcCtcAt110.055556
S1140P1140QcCTcAA110.055556
S1140P1140YCCtTAt110.055556
S1140P1140XCCTTAA110.055556
S1140P1140PccTccC11A.20.000662
S1140P1140XCCTTAA11All0
S1140P1140QcCTcAA11All0
S1140P1140ACctGct11All0
S1140P1140LcCtcTt11AY.1020.000027
S1140P1140PccTccC11AY.1050.000643
S1140P1140SCctTct11AY.1060.000335
S1140P1140PccTccC11AY.1170.000085
S1140P1140delCCT---11AY.1180.000063
S1140P1140SCctTct11AY.1180.000063
S1140P1140PccTccC11AY.1190.000035
S1140P1140PccTccC11AY.120.000316
S1140P1140PccTccC11AY.1200.000037
S1140P1140PccTccC11AY.200.000039
S1140P1140SCctTct11AY.210.001898
S1140P1140PccTccA11AY.230.00007
S1140P1140SCctTct11AY.250.000006
S1140P1140PccTccC11AY.290.000016
S1140P1140LcCtcTt11AY.30.00001
S1140P1140SCcTTcC11AY.30.00001
S1140P1140RcCtcGt11AY.330.000067
S1140P1140PccTccG11AY.390.000025
S1140P1140SCctTct11AY.390.000025
S1140P1140PccTccC11AY.39.10.00004
S1140P1140PccTccC11AY.39.1.10.000725
S1140P1140LcCtcTt11AY.40.000002
S1140P1140HcCtcAt11AY.40.000002
S1140P1140SCctTct11AY.4.20.000022
S1140P1140LcCtcTt11AY.430.000004
S1140P1140YCCtTAt11AY.430.000004
S1140P1140HcCtcAt11AY.440.000006
S1140P1140LcCtcTt11AY.440.000006
S1140P1140SCcTTcC11AY.46.20.000635
S1140P1140SCctTct11AY.610.000105
S1140P1140delCCT---11AY.670.000464
S1140P1140SCctTct11AY.7.10.000113
S1140P1140del1ccTcc-11AY.710.000475
S1140P1140PccTccC11AY.740.000116
S1140P1140YCCtTAt11AY.840.000437
S1140P1140HcCtcAt11AY.840.000437
S1140P1140SCctTct11AY.840.000437
S1140P1140delCCT---11AY.850.000427
S1140P1140delCCT---11AY.90.000068
S1140P1140PccTccC11AY.9.10.000084
S1140P1140HcCtcAt11AY.9.20.000037
S1140P1140SCctTct11AY.9.20.000037
S1140P1140LcCtcTt11AY.980.000079
S1140P1140SCctTct11AY.98.10.000048
S1140P1140YCCtTAt11AY.990.001049
S1140P1140SCctTct11AY.990.001049
S1140P1140PccTccC11B0.000128
S1140P1140LcCtcTt11B0.000128
S1140P1140RcCTcGG11B0.000128
S1140P1140del1ccTcc-11B.10.000009
S1140P1140ACctGct11B.10.000009
S1140P1140LcCtcTt11B.1.10.000018
S1140P1140PccTccC11B.1.1.10.000327
S1140P1140PccTccC11B.1.1.1230.017857
S1140P1140PccTccC11B.1.1.1940.00495
S1140P1140PccTccC11B.1.1.2220.000204
S1140P1140LcCtcTt11B.1.1.4160.000905
S1140P1140del1ccTcc-11B.1.1.70.000001
S1140P1140HcCtcAt11B.1.1.70.000001
S1140P1140PccTccA11B.1.1600.000031
S1140P1140del1ccTcc-11B.1.1700.00431
S1140P1140del1ccTcc-11B.1.1770.000013
S1140P1140SCctTct11B.1.1770.000013
S1140P1140SCctTct11B.1.177.150.000631
S1140P1140PccTccC11B.1.177.560.000668
S1140P1140delCCT---11B.1.177.70.000165
S1140P1140del1ccTcc-11B.1.20.000009
S1140P1140del2cCTc--11B.1.20.000009
S1140P1140LcCtcTt11B.1.20.000009
S1140P1140PccTccC11B.1.2060.000816
S1140P1140PccTccC11B.1.2210.000071
S1140P1140SCctTct11B.1.2790.000514
S1140P1140PccTccC11B.1.2980.002114
S1140P1140PccTccC11B.1.3110.000275
S1140P1140SCctTct11B.1.3110.000275
S1140P1140PccTccC11B.1.3240.001605
S1140P1140LcCtcTt11B.1.3380.008621
S1140P1140ICCtATt11B.1.36.80.001
S1140P1140PccTccC11B.1.3610.001289
S1140P1140PccTccC11B.1.3670.000792
S1140P1140PccTccC11B.1.3700.008
S1140P1140PccTccC11B.1.3770.004566
S1140P1140PccTccC11B.1.4130.004255
S1140P1140PccTccC11B.1.4380.006536
S1140P1140PccTccC11B.1.4520.013699
S1140P1140PccTccC11B.1.4590.004082
S1140P1140SCctTct11B.1.4590.004082
S1140P1140PccTccC11B.1.5010.007353
S1140P1140delCCT---11B.1.5610.000397
S1140P1140PccTccC11B.1.5750.000303
S1140P1140del1ccTcc-11B.1.5760.000907
S1140P1140PccTccC11B.1.5770.000687
S1140P1140LcCtcTt11B.1.617.20.000004
S1140P1140delCCT---11B.1.617.20.000004
S1140P1140PccTccC11B.1.88.10.004808
S1140P1140PccTccC11B.1.940.027027
S1140P1140SCctTct11B.550.00295
S1140P1140delCCT---11C.170.055556
S1140P1140delCCT---11C.370.000116
S1140P1140PccTccC11N.40.004255
S1140P1140LcCtcTt11P.10.000016
S1140P1140delCCT---11P.10.000016
S1140P1140delCCT---11P.1.150.000232
S1140P1140PccTccC11P.1.160.000374
S1140P1140del2CCt--t11Q.80.000165