CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1130

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1130I1130MnonsynatAatG409409124950-24952
S1130I1130VnonsynAtaGta268268124950-24952
S1130I1130IsynatAatT1781640.92134824950-24952
S1130I1130IsynatAatC178140.078651724950-24952
S1130I1130LnonsynAtaCta112620.55357124950-24952
S1130I1130LnonsynAtaTta112470.41964324950-24952
S1130I1130LnonsynAtACtG11220.017857124950-24952
S1130I1130LnonsynAtATtG11210.0089285724950-24952
S1130I1130TnonsynaTaaCa99980.98989924950-24952
S1130I1130TnonsynaTAaCG9910.01010124950-24952
S1130I1130deldelATA---3232124950-24952
S1130I1130RnonsynaTaaGa44124950-24952
S1130I1130EnonsynATAGAG33124950-24952
S1130I1130NnonsynaTAaAT22124950-24952
S1130I1130SnonsynATaTCa210.524950-24952
S1130I1130SnonsynATATCG210.524950-24952
S1130I1130del2delaTAa--11124950-24952
S1130I1130del1delatAat-11124950-24952
S1130I1130KnonsynaTaaAa11124950-24952

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1130I1130MatAatG409409All0.000078
S1130I1130VAtaGta268268All0.000051
S1130I1130VAtaGta197197AV.10.994949
S1130I1130IatAatT164178All0.000031
S1130I1130IatAatC14178All0.000003
S1130I1130MatAatG158158AY.40.000246
S1130I1130LAtaCta62112All0.000012
S1130I1130LAtaTta47112All0.000009
S1130I1130LAtACtG2112All0
S1130I1130LAtATtG1112All0
S1130I1130TaTaaCa9899All0.000019
S1130I1130TaTAaCG199All0
S1130I1130MatAatG6868B.1.1.70.000061
S1130I1130IatAatT3535B.1.617.20.000132
S1130I1130delATA---3232All0.000006
S1130I1130TaTaaCa2828B.1.1.70.000025
S1130I1130MatAatG2727B.1.177.480.084375
S1130I1130IatAatT2526B.1.1.70.000022
S1130I1130IatAatC126B.1.1.70.000001
S1130I1130LAtaCta1723B.1.1.70.000015
S1130I1130LAtaTta623B.1.1.70.000005
S1130I1130IatAatT2020AY.1020.00053
S1130I1130LAtaCta1919AY.1000.000874
S1130I1130IatAatT1414AY.200.000544
S1130I1130MatAatG1212AY.60.000494
S1130I1130MatAatG1212B.10.00011
S1130I1130VAtaGta1212B.1.617.20.000045
S1130I1130MatAatG1111AY.1030.000068
S1130I1130VAtaGta1111AY.1140.002542
S1130I1130MatAatG1111AY.740.001272
S1130I1130TaTaaCa1111B.1.3510.000327
S1130I1130VAtaGta1010AY.40.000016
S1130I1130IatAatT1010B.1.5260.000235
S1130I1130LAtaCta610B.1.617.20.000023
S1130I1130LAtaTta410B.1.617.20.000015
S1130I1130TaTaaCa99AY.40.000014
S1130I1130MatAatG88AY.430.000035
S1130I1130IatAatT77AY.390.000173
S1130I1130IatAatT57B.1.20.000044
S1130I1130IatAatC27B.1.20.000018
S1130I1130MatAatG77B.1.617.20.000026
S1130I1130TaTaaCa560.277778
S1130I1130TaTAaCG160.055556
S1130I1130IatAatT66AY.40.000009
S1130I1130VAtaGta66AY.430.000027
S1130I1130IatAatT46AY.430.000018
S1130I1130IatAatC26AY.430.000009
S1130I1130IatAatT66AY.440.000037
S1130I1130VAtaGta66B.1.1.70.000005
S1130I1130MatAatG66B.1.400.10.090909
S1130I1130TaTaaCa55AY.250.00003
S1130I1130IatAatT55AY.420.000201
S1130I1130LAtaTta55B.1.10.000091
S1130I1130TaTaaCa55B.1.617.20.000019
S1130I1130LAtACtG240.111111
S1130I1130LAtaTta140.055556
S1130I1130LAtATtG140.055556
S1130I1130RaTaaGa44All0.000001
S1130I1130LAtaTta44AY.10.001583
S1130I1130LAtaCta44AY.190.004561
S1130I1130LAtaTta44AY.40.000006
S1130I1130MatAatG44AY.440.000024
S1130I1130LAtaTta34AY.440.000018
S1130I1130LAtaCta14AY.440.000006
S1130I1130MatAatG44AY.98.10.000194
S1130I1130delATA---44B.1.1.70.000004
S1130I1130MatAatG44B.1.1770.000053
S1130I1130MatAatG44B.1.177.730.002265
S1130I1130MatAatG44B.1.177.810.000757
S1130I1130LAtaCta44B.1.3510.000119
S1130I1130LAtaTta44B.1.4000.001716
S1130I1130IatAatC34P.10.000047
S1130I1130IatAatT14P.10.000016
S1130I1130EATAGAG33All0.000001
S1130I1130LAtaTta23AY.1030.000012
S1130I1130LAtaCta13AY.1030.000006
S1130I1130TaTaaCa33AY.1190.000106
S1130I1130LAtaCta33AY.250.000018
S1130I1130MatAatG33AY.250.000018
S1130I1130IatAatT33AY.300.001187
S1130I1130MatAatG33AY.390.000074
S1130I1130TaTaaCa33AY.390.000074
S1130I1130MatAatG33AY.39.10.000119
S1130I1130delATA---33AY.430.000013
S1130I1130VAtaGta33B.1.1.2140.000166
S1130I1130LAtaTta33B.1.1.5190.000119
S1130I1130MatAatG33B.1.20.000026
S1130I1130TaTaaCa33Q.80.000495
S1130I1130EATAGAG220.111111
S1130I1130SATaTCa120.055556
S1130I1130SATATCG120.055556
S1130I1130NaTAaAT22All0
S1130I1130SATATCG12All0
S1130I1130SATaTCa12All0
S1130I1130MatAatG22AY.1020.000053
S1130I1130TaTaaCa22AY.1030.000012
S1130I1130delATA---22AY.1200.000074
S1130I1130IatAatT22AY.1200.000074
S1130I1130MatAatG22AY.200.000078
S1130I1130IatAatT22AY.230.000139
S1130I1130LAtaTta22AY.30.00002
S1130I1130MatAatG22AY.30.00002
S1130I1130IatAatT22AY.330.000134
S1130I1130delATA---22AY.330.000134
S1130I1130TaTaaCa22AY.330.000134
S1130I1130MatAatG22AY.360.000296
S1130I1130IatAatT22AY.360.000296
S1130I1130LAtaTta22AY.390.000049
S1130I1130delATA---22AY.40.000003
S1130I1130MatAatG22AY.4.20.000043
S1130I1130delATA---22AY.4.50.000215
S1130I1130TaTaaCa22AY.440.000012
S1130I1130IatAatC12AY.50.000021
S1130I1130IatAatT12AY.50.000021
S1130I1130MatAatG22AY.540.000191
S1130I1130MatAatG22B.1.1.1570.001826
S1130I1130MatAatG22B.1.1.4130.013793
S1130I1130MatAatG22B.1.1600.000062
S1130I1130LAtaCta22B.1.1770.000026
S1130I1130MatAatG22B.1.177.600.000437
S1130I1130TaTaaCa22B.1.20.000018
S1130I1130MatAatG22B.1.3510.000059
S1130I1130VAtaGta22B.1.4260.002018
S1130I1130LAtaTta22B.1.5250.000226
S1130I1130MatAatG22D.20.00015
S1130I1130delATA---22P.10.000032
S1130I1130MatAatG22P.1.140.000096
S1130I1130VAtaGta22P.1.140.000096
S1130I1130IatAatC12P.70.004367
S1130I1130IatAatT12P.70.004367
S1130I1130MatAatG110.055556
S1130I1130KaTaaAa11All0
S1130I1130del2aTAa--11All0
S1130I1130del1atAat-11All0
S1130I1130IatAatT11AY.1000.000046
S1130I1130LAtaTta11AY.1020.000027
S1130I1130TaTaaCa11AY.1020.000027
S1130I1130VAtaGta11AY.1020.000027
S1130I1130IatAatT11AY.1030.000006
S1130I1130RaTaaGa11AY.1030.000006
S1130I1130VAtaGta11AY.1030.000006
S1130I1130delATA---11AY.1080.001103
S1130I1130TaTaaCa11AY.1100.000113
S1130I1130TaTaaCa11AY.1110.000183
S1130I1130LAtaCta11AY.1130.000142
S1130I1130IatAatC11AY.1130.000142
S1130I1130MatAatG11AY.1180.000063
S1130I1130delATA---11AY.1180.000063
S1130I1130MatAatG11AY.1190.000035
S1130I1130VAtaGta11AY.1190.000035
S1130I1130IatAatT11AY.1190.000035
S1130I1130TaTaaCa11AY.1200.000037
S1130I1130TaTaaCa11AY.200.000039
S1130I1130VAtaGta11AY.250.000006
S1130I1130delATA---11AY.30.00001
S1130I1130IatAatT11AY.30.00001
S1130I1130VAtaGta11AY.3.10.000085
S1130I1130MatAatG11AY.300.000396
S1130I1130MatAatG11AY.320.000532
S1130I1130IatAatT11AY.340.000097
S1130I1130IatAatT11AY.39.10.00004
S1130I1130VAtaGta11AY.39.10.00004
S1130I1130TaTaaCa11AY.4.50.000107
S1130I1130LAtaTta11AY.430.000004
S1130I1130TaTaaCa11AY.430.000004
S1130I1130VAtaGta11AY.440.000006
S1130I1130RaTaaGa11AY.440.000006
S1130I1130VAtaGta11AY.450.000122
S1130I1130IatAatC11AY.46.20.000635
S1130I1130TaTaaCa11AY.46.40.000165
S1130I1130IatAatT11AY.46.60.000072
S1130I1130MatAatG11AY.470.000031
S1130I1130TaTaaCa11AY.470.000031
S1130I1130VAtaGta11AY.50.000021
S1130I1130TaTaaCa11AY.50.000021
S1130I1130MatAatG11AY.5.30.000337
S1130I1130MatAatG11AY.530.000288
S1130I1130VAtaGta11AY.540.000095
S1130I1130EATAGAG11AY.620.000436
S1130I1130TaTaaCa11AY.650.000533
S1130I1130delATA---11AY.670.000464
S1130I1130TaTaaCa11AY.670.000464
S1130I1130TaTaaCa11AY.700.000209
S1130I1130VAtaGta11AY.780.001541
S1130I1130RaTaaGa11AY.790.001211
S1130I1130LAtaCta11AY.840.000437
S1130I1130delATA---11AY.850.000427
S1130I1130IatAatC11AY.850.000427
S1130I1130delATA---11AY.90.000068
S1130I1130MatAatG11AY.920.000287
S1130I1130MatAatG11AY.980.000079
S1130I1130delATA---11AY.99.20.000092
S1130I1130TaTaaCa11B.10.000009
S1130I1130RaTaaGa11B.10.000009
S1130I1130NaTAaAT11B.10.000009
S1130I1130LAtaTta11B.10.000009
S1130I1130TaTaaCa11B.1.10.000018
S1130I1130MatAatG11B.1.10.000018
S1130I1130MatAatG11B.1.1.10.000327
S1130I1130MatAatG11B.1.1.2220.000204
S1130I1130TaTaaCa11B.1.1.2830.023256
S1130I1130IatAatT11B.1.1.310.066667
S1130I1130MatAatG11B.1.1.3170.000412
S1130I1130MatAatG11B.1.1.4530.008475
S1130I1130MatAatG11B.1.1.5190.00004
S1130I1130MatAatG11B.1.1.5260.003546
S1130I1130del1atAat-11B.1.1.70.000001
S1130I1130del2aTAa--11B.1.1.70.000001
S1130I1130MatAatG11B.1.160.320.004292
S1130I1130VAtaGta11B.1.1770.000013
S1130I1130MatAatG11B.1.177.150.000631
S1130I1130MatAatG11B.1.177.560.000668
S1130I1130MatAatG11B.1.177.650.000665
S1130I1130delATA---11B.1.177.70.000165
S1130I1130VAtaGta11B.1.177.810.000189
S1130I1130LAtaCta11B.1.20.000009
S1130I1130VAtaGta11B.1.20.000009
S1130I1130LAtaTta11B.1.2210.000071
S1130I1130TaTaaCa11B.1.2520.006623
S1130I1130VAtaGta11B.1.258.110.000396
S1130I1130VAtaGta11B.1.258.210.007752
S1130I1130MatAatG11B.1.3360.002439
S1130I1130MatAatG11B.1.3370.005587
S1130I1130delATA---11B.1.3510.00003
S1130I1130MatAatG11B.1.36.290.000517
S1130I1130LAtaCta11B.1.3690.000285
S1130I1130MatAatG11B.1.4000.000429
S1130I1130VAtaGta11B.1.4220.000812
S1130I1130MatAatG11B.1.4270.00005
S1130I1130MatAatG11B.1.429.10.012048
S1130I1130IatAatT11B.1.438.10.000107
S1130I1130TaTaaCa11B.1.466.20.000391
S1130I1130IatAatT11B.1.466.20.000391
S1130I1130delATA---11B.1.5610.000397
S1130I1130IatAatT11B.1.5640.000426
S1130I1130VAtaGta11B.1.5680.001111
S1130I1130MatAatG11B.1.5750.000303
S1130I1130KaTaaAa11B.1.5950.000261
S1130I1130IatAatT11B.1.5950.000261
S1130I1130NaTAaAT11B.1.5950.000261
S1130I1130IatAatT11B.1.5960.000087
S1130I1130delATA---11B.1.617.20.000004
S1130I1130MatAatG11B.1.6270.00202
S1130I1130IatAatC11B.1.6300.005236
S1130I1130delATA---11B.1.6300.005236
S1130I1130LAtaTta11B.1.6370.000073
S1130I1130VAtaGta11C.370.000116
S1130I1130delATA---11C.370.000116
S1130I1130MatAatG11C.370.000116
S1130I1130LAtaCta11D.20.000075
S1130I1130MatAatG11P.10.000016
S1130I1130delATA---11P.1.150.000232
S1130I1130delATA---11Q.80.000165