CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1124 & Codon = Tgt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1124G1124CnonsynGgtTgt3623600.99447524932-24934

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1124G1124CGgtTgt360362All0.000069
S1124G1124CGgtTgt6969AY.40.000107
S1124G1124CGgtTgt4343B.1.1.70.000038
S1124G1124CGgtTgt3333AY.430.000146
S1124G1124CGgtTgt3232AY.1180.002005
S1124G1124CGgtTgt2929B.1.3510.000862
S1124G1124CGgtTgt1616B.1.617.20.00006
S1124G1124CGgtTgt99AY.440.000055
S1124G1124CGgtTgt99B.10.000082
S1124G1124CGgtTgt88AY.70.001568
S1124G1124CGgtTgt77AY.250.000042
S1124G1124CGgtTgt66P.10.000095
S1124G1124CGgtTgt55AY.1030.000031
S1124G1124CGgtTgt45B.1.10.000073
S1124G1124CGgtTgt44AY.1200.000149
S1124G1124CGgtTgt44AY.390.000099
S1124G1124CGgtTgt44AY.50.000083
S1124G1124CGgtTgt44B.1.6290.053333
S1124G1124CGgtTgt33AY.30.00003
S1124G1124CGgtTgt33AY.60.000123
S1124G1124CGgtTgt33AY.98.10.000145
S1124G1124CGgtTgt33B.1.20.000026
S1124G1124CGgtTgt120.055556
S1124G1124CGgtTgt22AY.1020.000053
S1124G1124CGgtTgt22AY.140.000176
S1124G1124CGgtTgt22AY.290.000032
S1124G1124CGgtTgt22AY.4.20.000043
S1124G1124CGgtTgt22AY.4.50.000215
S1124G1124CGgtTgt22AY.450.000243
S1124G1124CGgtTgt22B.1.1.4340.000697
S1124G1124CGgtTgt22B.1.177.600.000437
S1124G1124CGgtTgt22B.1.3690.00057
S1124G1124CGgtTgt22B.1.4290.000047
S1124G1124CGgtTgt22B.1.5260.000047
S1124G1124CGgtTgt11A.2.50.000499
S1124G1124CGgtTgt11AY.1190.000035
S1124G1124CGgtTgt11AY.20.000356
S1124G1124CGgtTgt11AY.260.000028
S1124G1124CGgtTgt11AY.270.000065
S1124G1124CGgtTgt11AY.320.000532
S1124G1124CGgtTgt11AY.340.000097
S1124G1124CGgtTgt11AY.420.00004
S1124G1124CGgtTgt11AY.460.000104
S1124G1124CGgtTgt11AY.470.000031
S1124G1124CGgtTgt11AY.540.000095
S1124G1124CGgtTgt11AY.630.000387
S1124G1124CGgtTgt11AY.690.000187
S1124G1124CGgtTgt11AY.750.000056
S1124G1124CGgtTgt11AY.90.000068
S1124G1124CGgtTgt11AY.9.20.000037
S1124G1124CGgtTgt11AY.940.000443
S1124G1124CGgtTgt11AY.980.000079
S1124G1124CGgtTgt11AY.990.001049
S1124G1124CGgtTgt11AY.99.20.000092
S1124G1124CGgtTgt11B0.000128
S1124G1124CGgtTgt11B.1.1.2220.000204
S1124G1124CGgtTgt11B.1.1.500.000679
S1124G1124CGgtTgt11B.1.1.700.000341
S1124G1124CGgtTgt11B.1.1600.000031
S1124G1124CGgtTgt11B.1.1770.000013
S1124G1124CGgtTgt11B.1.2210.000071
S1124G1124CGgtTgt11B.1.2370.004975
S1124G1124CGgtTgt11B.1.2580.000067
S1124G1124CGgtTgt11B.1.30.002618
S1124G1124CGgtTgt11B.1.3290.000608
S1124G1124CGgtTgt11B.1.564.10.001577
S1124G1124CGgtTgt11B.1.5770.000687
S1124G1124CGgtTgt11B.1.5960.000087
S1124G1124CGgtTgt11B.1.617.10.000129
S1124G1124CGgtTgt11B.1.6210.000089
S1124G1124CGgtTgt11B.1.6280.000352
S1124G1124CGgtTgt11C.36.30.000567
S1124G1124CGgtTgt11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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