CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1118 & Codon = Cac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1118D1118HnonsynGacCac114453211443770.99986524914-24916

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1118D1118HGacCac11443771144532All0.218876
S1118D1118HGacCac11121801112334B.1.1.70.995649
S1118D1118HGacCac78827882Q.10.995705
S1118D1118HGacCac68886888Q.30.998985
S1118D1118HGacCac59375937Q.80.979057
S1118D1118HGacCac21942194Q.40.997726
S1118D1118HGacCac21922192B.1.10.039765
S1118D1118HGacCac16281628Q.20.998773
S1118D1118HGacCac13341334B.10.012219
S1118D1118HGacCac10271027B.1.6200.971618
S1118D1118HGacCac895895Q.70.994444
S1118D1118HGacCac180180B.1.177.730.101925
S1118D1118HGacCac168168P.10.002647
S1118D1118HGacCac151151Q.61
S1118D1118HGacCac141141B.1.5760.127833
S1118D1118HGacCac114114B.1.1770.001501
S1118D1118HGacCac8282B.1.3750.067213
S1118D1118HGacCac7979B.1.5960.006884
S1118D1118HGacCac5959Q.51
S1118D1118HGacCac5353B.1.20.000467
S1118D1118HGacCac4848B.1.1.2140.002662
S1118D1118HGacCac4545XA1
S1118D1118HGacCac4141B0.00524
S1118D1118HGacCac3636B.1.1.4090.101983
S1118D1118HGacCac3535B.1.617.20.000132
S1118D1118HGacCac3535P.1.10.011118
S1118D1118HGacCac3434B.1.177.70.005605
S1118D1118HGacCac3434B.1.5260.000799
S1118D1118HGacCac3232AY.430.000142
S1118D1118HGacCac3131B.1.6090.014861
S1118D1118HGacCac3030B.1.3510.000892
S1118D1118HGacCac2626P.1.160.009727
S1118D1118HGacCac2424B.1.1.1610.084806
S1118D1118HGacCac2222B.1.4290.000518
S1118D1118HGacCac2121AY.440.000128
S1118D1118HGacCac2020B.1.1.5190.000794
S1118D1118HGacCac2020B.1.2210.001421
S1118D1118HGacCac1717P.1.170.00275
S1118D1118HGacCac1616B.1.258.170.001664
S1118D1118HGacCac1616B.1.6280.005638
S1118D1118HGacCac1515B.1.1.2200.027881
S1118D1118HGacCac1515B.1.6230.008047
S1118D1118HGacCac1414B.1.1.3120.026769
S1118D1118HGacCac1414B.1.1.500.009504
S1118D1118HGacCac1414B.1.1.5280.067308
S1118D1118HGacCac1313P.1.120.006292
S1118D1118HGacCac1212B.1.1.390.006116
S1118D1118HGacCac1111B.1.4270.000555
S1118D1118HGacCac1111B.1.6370.000804
S1118D1118HGacCac1111P.1.100.002964
S1118D1118HGacCac1010B.1.1.5070.086957
S1118D1118HGacCac1010B.1.1600.000312
S1118D1118HGacCac99AY.300.003562
S1118D1118HGacCac99B.1.4110.033333
S1118D1118HGacCac99C.36.30.005105
S1118D1118HGacCac88AY.1030.00005
S1118D1118HGacCac88AY.230.000558
S1118D1118HGacCac88AY.410.002352
S1118D1118HGacCac88P.1.140.000382
S1118D1118HGacCac670.333333
S1118D1118HGacCac77P.1.130.006289
S1118D1118HGacCac77P.1.150.001626
S1118D1118HGacCac66B.1.1390.004399
S1118D1118HGacCac66B.1.2430.000418
S1118D1118HGacCac66B.1.3110.001647
S1118D1118HGacCac66B.4.10.113208
S1118D1118HGacCac55A0.001935
S1118D1118HGacCac55A.2.50.002495
S1118D1118HGacCac55B.1.1.10.001633
S1118D1118HGacCac55B.1.1.280.001556
S1118D1118HGacCac55B.1.1.3170.002058
S1118D1118HGacCac55B.1.1.700.001705
S1118D1118HGacCac55B.1.2370.024876
S1118D1118HGacCac55B.1.2580.000333
S1118D1118HGacCac55B.1.3690.001426
S1118D1118HGacCac55B.1.617.10.000645
S1118D1118HGacCac55R.10.00045
S1118D1118HGacCac44AY.1000.000184
S1118D1118HGacCac44AY.1020.000106
S1118D1118HGacCac44AY.260.000113
S1118D1118HGacCac44AY.390.000099
S1118D1118HGacCac44AY.470.000124
S1118D1118HGacCac44AY.75.10.000721
S1118D1118HGacCac44AY.9.20.000147
S1118D1118HGacCac44B.1.1.5230.00625
S1118D1118HGacCac44B.1.1570.01194
S1118D1118HGacCac44B.1.3670.00317
S1118D1118HGacCac44B.1.6190.003484
S1118D1118HGacCac44B.1.6330.166667
S1118D1118HGacCac44C.370.000464
S1118D1118HGacCac44P.1.70.001277
S1118D1118HGacCac33AY.40.000005
S1118D1118HGacCac33AY.420.000121
S1118D1118HGacCac33B.1.1.100.003344
S1118D1118HGacCac33B.1.1.2050.011152
S1118D1118HGacCac33B.1.1.2940.003797
S1118D1118HGacCac33B.1.1.3060.001315
S1118D1118HGacCac33B.1.1.3480.002389
S1118D1118HGacCac33B.1.1.3700.037975
S1118D1118HGacCac33B.1.2140.010989
S1118D1118HGacCac33B.1.2340.000396
S1118D1118HGacCac33B.1.3300.085714
S1118D1118HGacCac33B.1.360.000438
S1118D1118HGacCac33B.1.5330.028846
S1118D1118HGacCac33B.1.5750.00091
S1118D1118HGacCac33B.1.5950.000783
S1118D1118HGacCac33B.1.5990.010949
S1118D1118HGacCac33B.1.6250.007059
S1118D1118HGacCac33P.1.10.10.02439
S1118D1118HGacCac33P.1.60.005837
S1118D1118HGacCac22AY.1180.000125
S1118D1118HGacCac22AY.34.10.00102
S1118D1118HGacCac22AY.370.000632
S1118D1118HGacCac22AY.39.20.003082
S1118D1118HGacCac22AY.4.30.001684
S1118D1118HGacCac22AY.460.000208
S1118D1118HGacCac22AY.750.000112
S1118D1118HGacCac22AY.950.001522
S1118D1118HGacCac22B.1.1.1410.004024
S1118D1118HGacCac22B.1.1.2160.001781
S1118D1118HGacCac22B.1.1.2690.002706
S1118D1118HGacCac22B.1.1.2910.001485
S1118D1118HGacCac22B.1.1.2990.02439
S1118D1118HGacCac22B.1.1.3180.000604
S1118D1118HGacCac22B.1.1.3370.007194
S1118D1118HGacCac22B.1.1.3890.012121
S1118D1118HGacCac22B.1.1.5240.041667
S1118D1118HGacCac22B.1.1.5250.010929
S1118D1118HGacCac22B.1.1700.008621
S1118D1118HGacCac22B.1.177.410.005
S1118D1118HGacCac22B.1.177.420.001789
S1118D1118HGacCac22B.1.177.820.000955
S1118D1118HGacCac22B.1.214.20.001199
S1118D1118HGacCac22B.1.258.140.001961
S1118D1118HGacCac22B.1.351.20.000605
S1118D1118HGacCac22B.1.3800.013245
S1118D1118HGacCac22B.1.4620.014493
S1118D1118HGacCac22B.1.466.20.000782
S1118D1118HGacCac22B.1.4700.002809
S1118D1118HGacCac22B.1.5250.000226
S1118D1118HGacCac22B.1.5800.00813
S1118D1118HGacCac22B.1.6210.000177
S1118D1118HGacCac22B.1.6270.00404
S1118D1118HGacCac22B.1.6310.006734
S1118D1118HGacCac22B.1.780.017094
S1118D1118HGacCac22B.550.0059
S1118D1118HGacCac22C.360.001821
S1118D1118HGacCac11A.2.5.20.001572
S1118D1118HGacCac11A.270.001656
S1118D1118HGacCac11A.70.055556
S1118D1118HGacCac11AD.20.000219
S1118D1118HGacCac11AT.10.005128
S1118D1118HGacCac11AY.100.00053
S1118D1118HGacCac11AY.1130.000142
S1118D1118HGacCac11AY.1200.000037
S1118D1118HGacCac11AY.190.00114
S1118D1118HGacCac11AY.200.000039
S1118D1118HGacCac11AY.290.000016
S1118D1118HGacCac11AY.330.000067
S1118D1118HGacCac11AY.360.000148
S1118D1118HGacCac11AY.39.10.00004
S1118D1118HGacCac11AY.450.000122
S1118D1118HGacCac11AY.46.10.001027
S1118D1118HGacCac11AY.50.000021
S1118D1118HGacCac11AY.5.40.000277
S1118D1118HGacCac11AY.520.000814
S1118D1118HGacCac11AY.540.000095
S1118D1118HGacCac11AY.610.000105
S1118D1118HGacCac11AY.620.000436
S1118D1118HGacCac11AY.650.000533
S1118D1118HGacCac11AY.680.000274
S1118D1118HGacCac11AY.70.000196
S1118D1118HGacCac11AY.7.10.000113
S1118D1118HGacCac11AY.9.10.000084
S1118D1118HGacCac11AY.920.000287
S1118D1118HGacCac11AY.960.002075
S1118D1118HGacCac11AZ.30.00152
S1118D1118HGacCac11B.1.1.1350.004695
S1118D1118HGacCac11B.1.1.1420.017544
S1118D1118HGacCac11B.1.1.1600.02381
S1118D1118HGacCac11B.1.1.1710.003676
S1118D1118HGacCac11B.1.1.1870.00885
S1118D1118HGacCac11B.1.1.1890.001513
S1118D1118HGacCac11B.1.1.2210.010101
S1118D1118HGacCac11B.1.1.2220.000204
S1118D1118HGacCac11B.1.1.2260.005814
S1118D1118HGacCac11B.1.1.2310.003096
S1118D1118HGacCac11B.1.1.2360.006897
S1118D1118HGacCac11B.1.1.2370.005405
S1118D1118HGacCac11B.1.1.250.000569
S1118D1118HGacCac11B.1.1.2800.003086
S1118D1118HGacCac11B.1.1.2840.000107
S1118D1118HGacCac11B.1.1.3110.000358
S1118D1118HGacCac11B.1.1.3510.002793
S1118D1118HGacCac11B.1.1.3650.005587
S1118D1118HGacCac11B.1.1.3720.000689
S1118D1118HGacCac11B.1.1.3740.002375
S1118D1118HGacCac11B.1.1.4020.011111
S1118D1118HGacCac11B.1.1.4160.000905
S1118D1118HGacCac11B.1.1.4320.001266
S1118D1118HGacCac11B.1.1.4370.010417
S1118D1118HGacCac11B.1.1.440.00241
S1118D1118HGacCac11B.1.1.4400.011765
S1118D1118HGacCac11B.1.1.4480.002033
S1118D1118HGacCac11B.1.1.4620.008621
S1118D1118HGacCac11B.1.1.4870.005587
S1118D1118HGacCac11B.1.1.5260.003546
S1118D1118HGacCac11B.1.1.540.003021
S1118D1118HGacCac11B.1.1.550.012987
S1118D1118HGacCac11B.1.1.630.000386
S1118D1118HGacCac11B.1.1.890.006061
S1118D1118HGacCac11B.1.1.990.02381
S1118D1118HGacCac11B.1.110.30.000718
S1118D1118HGacCac11B.1.1110.001175
S1118D1118HGacCac11B.1.130.002375
S1118D1118HGacCac11B.1.160.140.002119
S1118D1118HGacCac11B.1.160.160.000929
S1118D1118HGacCac11B.1.177.210.000076
S1118D1118HGacCac11B.1.177.310.011494
S1118D1118HGacCac11B.1.177.440.000519
S1118D1118HGacCac11B.1.177.510.004566
S1118D1118HGacCac11B.1.177.520.001757
S1118D1118HGacCac11B.1.177.540.000606
S1118D1118HGacCac11B.1.177.600.000218
S1118D1118HGacCac11B.1.177.670.007634
S1118D1118HGacCac11B.1.177.80.000752
S1118D1118HGacCac11B.1.177.810.000189
S1118D1118HGacCac11B.1.177.860.000183
S1118D1118HGacCac11B.1.1790.003759
S1118D1118HGacCac11B.1.1900.01
S1118D1118HGacCac11B.1.2060.000816
S1118D1118HGacCac11B.1.214.30.007143
S1118D1118HGacCac11B.1.2320.000537
S1118D1118HGacCac11B.1.2390.001221
S1118D1118HGacCac11B.1.2650.001271
S1118D1118HGacCac11B.1.3240.001605
S1118D1118HGacCac11B.1.3260.007576
S1118D1118HGacCac11B.1.351.30.000876
S1118D1118HGacCac11B.1.351.50.0006
S1118D1118HGacCac11B.1.36.100.004785
S1118D1118HGacCac11B.1.36.160.001425
S1118D1118HGacCac11B.1.36.290.000517
S1118D1118HGacCac11B.1.36.390.002217
S1118D1118HGacCac11B.1.3990.001934
S1118D1118HGacCac11B.1.415.10.007576
S1118D1118HGacCac11B.1.4330.003195
S1118D1118HGacCac11B.1.4730.019231
S1118D1118HGacCac11B.1.4970.000315
S1118D1118HGacCac11B.1.4990.00105
S1118D1118HGacCac11B.1.5210.004975
S1118D1118HGacCac11B.1.5230.002451
S1118D1118HGacCac11B.1.5240.001406
S1118D1118HGacCac11B.1.5650.00081
S1118D1118HGacCac11B.1.5880.00091
S1118D1118HGacCac11B.1.617.30.002985
S1118D1118HGacCac11B.1.6320.006711
S1118D1118HGacCac11B.1.6340.003425
S1118D1118HGacCac11B.1.6360.006711
S1118D1118HGacCac11B.1.810.021277
S1118D1118HGacCac11B.1.88.10.004808
S1118D1118HGacCac11B.60.00091
S1118D1118HGacCac11N.50.001767

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.