CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1118 | D1118H | nonsyn | Gac | Cac | 1144532 | 1144377 | 0.999865 | 24914-24916 | |
S | 1118 | D1118H | nonsyn | GaC | CaT | 1144532 | 155 | 0.000135427 | 24914-24916 | |
S | 1118 | D1118Y | nonsyn | Gac | Tac | 4523 | 4523 | 1 | 24914-24916 | |
S | 1118 | D1118D | syn | gaC | gaT | 602 | 602 | 1 | 24914-24916 | |
S | 1118 | D1118A | nonsyn | gAc | gCc | 67 | 67 | 1 | 24914-24916 | |
S | 1118 | D1118G | nonsyn | gAc | gGc | 50 | 50 | 1 | 24914-24916 | |
S | 1118 | D1118V | nonsyn | gAc | gTc | 34 | 33 | 0.970588 | 24914-24916 | |
S | 1118 | D1118V | nonsyn | gAC | gTT | 34 | 1 | 0.0294118 | 24914-24916 | |
S | 1118 | D1118del | del | GAC | --- | 30 | 30 | 1 | 24914-24916 | |
S | 1118 | D1118E | nonsyn | gaC | gaA | 22 | 12 | 0.545455 | 24914-24916 | |
S | 1118 | D1118E | nonsyn | gaC | gaG | 22 | 10 | 0.454545 | 24914-24916 | |
S | 1118 | D1118N | nonsyn | Gac | Aac | 7 | 7 | 1 | 24914-24916 | |
S | 1118 | D1118Q | nonsyn | GaC | CaA | 6 | 6 | 1 | 24914-24916 | |
S | 1118 | D1118R | nonsyn | GAc | CGc | 5 | 5 | 1 | 24914-24916 | |
S | 1118 | D1118L | nonsyn | GAC | CTT | 4 | 3 | 0.75 | 24914-24916 | |
S | 1118 | D1118L | nonsyn | GAc | CTc | 4 | 1 | 0.25 | 24914-24916 | |
S | 1118 | D1118del1 | del | gaC | ga- | 2 | 2 | 1 | 24914-24916 | |
S | 1118 | D1118F | nonsyn | GAc | TTc | 2 | 2 | 1 | 24914-24916 | |
S | 1118 | D1118I | nonsyn | GAc | ATc | 1 | 1 | 1 | 24914-24916 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1118 | D1118H | Gac | Cac | 1144377 | 1144532 | All | 0.218876 |
S | 1118 | D1118H | GaC | CaT | 155 | 1144532 | All | 0.00003 |
S | 1118 | D1118H | Gac | Cac | 1112180 | 1112334 | B.1.1.7 | 0.995649 |
S | 1118 | D1118H | GaC | CaT | 154 | 1112334 | B.1.1.7 | 0.000138 |
S | 1118 | D1118H | Gac | Cac | 7882 | 7882 | Q.1 | 0.995705 |
S | 1118 | D1118H | Gac | Cac | 6888 | 6888 | Q.3 | 0.998985 |
S | 1118 | D1118H | Gac | Cac | 5937 | 5937 | Q.8 | 0.979057 |
S | 1118 | D1118Y | Gac | Tac | 4523 | 4523 | All | 0.000865 |
S | 1118 | D1118Y | Gac | Tac | 2808 | 2808 | B.1.1.7 | 0.002514 |
S | 1118 | D1118H | Gac | Cac | 2194 | 2194 | Q.4 | 0.997726 |
S | 1118 | D1118H | Gac | Cac | 2192 | 2192 | B.1.1 | 0.039765 |
S | 1118 | D1118H | Gac | Cac | 1628 | 1628 | Q.2 | 0.998773 |
S | 1118 | D1118H | Gac | Cac | 1334 | 1334 | B.1 | 0.012219 |
S | 1118 | D1118H | Gac | Cac | 1027 | 1027 | B.1.620 | 0.971618 |
S | 1118 | D1118H | Gac | Cac | 895 | 895 | Q.7 | 0.994444 |
S | 1118 | D1118D | gaC | gaT | 602 | 602 | All | 0.000115 |
S | 1118 | D1118Y | Gac | Tac | 261 | 261 | B.1.258 | 0.017369 |
S | 1118 | D1118H | Gac | Cac | 180 | 180 | B.1.177.73 | 0.101925 |
S | 1118 | D1118Y | Gac | Tac | 179 | 179 | AY.116.1 | 0.055746 |
S | 1118 | D1118H | Gac | Cac | 168 | 168 | P.1 | 0.002647 |
S | 1118 | D1118H | Gac | Cac | 151 | 151 | Q.6 | 1 |
S | 1118 | D1118H | Gac | Cac | 141 | 141 | B.1.576 | 0.127833 |
S | 1118 | D1118Y | Gac | Tac | 127 | 127 | B.1.617.2 | 0.000478 |
S | 1118 | D1118H | Gac | Cac | 114 | 114 | B.1.177 | 0.001501 |
S | 1118 | D1118D | gaC | gaT | 105 | 105 | AY.5 | 0.002168 |
S | 1118 | D1118Y | Gac | Tac | 86 | 86 | AY.47 | 0.002675 |
S | 1118 | D1118Y | Gac | Tac | 82 | 82 | B.1.1.329 | 0.315385 |
S | 1118 | D1118H | Gac | Cac | 82 | 82 | B.1.375 | 0.067213 |
S | 1118 | D1118H | Gac | Cac | 79 | 79 | B.1.596 | 0.006884 |
S | 1118 | D1118A | gAc | gCc | 67 | 67 | All | 0.000013 |
S | 1118 | D1118Y | Gac | Tac | 65 | 65 | B.1.2 | 0.000572 |
S | 1118 | D1118Y | Gac | Tac | 61 | 61 | Q.8 | 0.010059 |
S | 1118 | D1118H | Gac | Cac | 59 | 59 | Q.5 | 1 |
S | 1118 | D1118Y | Gac | Tac | 55 | 55 | AY.5 | 0.001136 |
S | 1118 | D1118Y | Gac | Tac | 54 | 54 | AY.4 | 0.000084 |
S | 1118 | D1118H | Gac | Cac | 53 | 53 | B.1.2 | 0.000467 |
S | 1118 | D1118G | gAc | gGc | 50 | 50 | All | 0.00001 |
S | 1118 | D1118D | gaC | gaT | 49 | 49 | AY.25 | 0.000295 |
S | 1118 | D1118Y | Gac | Tac | 49 | 49 | B.1.1.519 | 0.001946 |
S | 1118 | D1118D | gaC | gaT | 49 | 49 | B.1.2 | 0.000431 |
S | 1118 | D1118H | Gac | Cac | 48 | 48 | B.1.1.214 | 0.002662 |
S | 1118 | D1118Y | Gac | Tac | 47 | 47 | B.1 | 0.00043 |
S | 1118 | D1118H | Gac | Cac | 45 | 45 | XA | 1 |
S | 1118 | D1118A | gAc | gCc | 44 | 44 | AY.4 | 0.000068 |
S | 1118 | D1118H | Gac | Cac | 41 | 41 | B | 0.00524 |
S | 1118 | D1118D | gaC | gaT | 41 | 41 | P.1 | 0.000646 |
S | 1118 | D1118D | gaC | gaT | 38 | 38 | AY.4 | 0.000059 |
S | 1118 | D1118Y | Gac | Tac | 37 | 37 | AY.44 | 0.000225 |
S | 1118 | D1118Y | Gac | Tac | 37 | 37 | B.1.367 | 0.029319 |
S | 1118 | D1118D | gaC | gaT | 36 | 36 | AY.103 | 0.000224 |
S | 1118 | D1118H | Gac | Cac | 36 | 36 | B.1.1.409 | 0.101983 |
S | 1118 | D1118H | Gac | Cac | 35 | 35 | B.1.617.2 | 0.000132 |
S | 1118 | D1118H | Gac | Cac | 35 | 35 | P.1.1 | 0.011118 |
S | 1118 | D1118V | gAc | gTc | 33 | 34 | All | 0.000006 |
S | 1118 | D1118V | gAC | gTT | 1 | 34 | All | 0 |
S | 1118 | D1118H | Gac | Cac | 34 | 34 | B.1.177.7 | 0.005605 |
S | 1118 | D1118H | Gac | Cac | 34 | 34 | B.1.526 | 0.000799 |
S | 1118 | D1118H | Gac | Cac | 32 | 32 | AY.43 | 0.000142 |
S | 1118 | D1118H | Gac | Cac | 31 | 31 | B.1.609 | 0.014861 |
S | 1118 | D1118del | GAC | --- | 30 | 30 | All | 0.000006 |
S | 1118 | D1118H | Gac | Cac | 30 | 30 | B.1.351 | 0.000892 |
S | 1118 | D1118D | gaC | gaT | 30 | 30 | B.1.617.2 | 0.000113 |
S | 1118 | D1118Y | Gac | Tac | 28 | 28 | AY.33 | 0.00187 |
S | 1118 | D1118Y | Gac | Tac | 28 | 28 | AY.43 | 0.000124 |
S | 1118 | D1118D | gaC | gaT | 28 | 28 | B.1.1.50 | 0.019009 |
S | 1118 | D1118Y | Gac | Tac | 26 | 26 | AY.98 | 0.002054 |
S | 1118 | D1118V | gAc | gTc | 26 | 26 | B.6.6 | 0.023111 |
S | 1118 | D1118H | Gac | Cac | 26 | 26 | P.1.16 | 0.009727 |
S | 1118 | D1118Y | Gac | Tac | 25 | 25 | B.1.1.63 | 0.009645 |
S | 1118 | D1118Y | Gac | Tac | 24 | 24 | AY.103 | 0.000149 |
S | 1118 | D1118H | Gac | Cac | 24 | 24 | B.1.1.161 | 0.084806 |
S | 1118 | D1118E | gaC | gaA | 12 | 22 | All | 0.000002 |
S | 1118 | D1118E | gaC | gaG | 10 | 22 | All | 0.000002 |
S | 1118 | D1118Y | Gac | Tac | 22 | 22 | AY.70 | 0.004587 |
S | 1118 | D1118Y | Gac | Tac | 22 | 22 | B.1.1 | 0.000399 |
S | 1118 | D1118H | Gac | Cac | 22 | 22 | B.1.429 | 0.000518 |
S | 1118 | D1118H | Gac | Cac | 21 | 21 | AY.44 | 0.000128 |
S | 1118 | D1118D | gaC | gaT | 21 | 21 | AY.9.1 | 0.001758 |
S | 1118 | D1118H | Gac | Cac | 20 | 20 | B.1.1.519 | 0.000794 |
S | 1118 | D1118H | Gac | Cac | 20 | 20 | B.1.221 | 0.001421 |
S | 1118 | D1118Y | Gac | Tac | 17 | 17 | AY.119 | 0.0006 |
S | 1118 | D1118G | gAc | gGc | 17 | 17 | AY.44 | 0.000103 |
S | 1118 | D1118Y | Gac | Tac | 17 | 17 | B.1.1.1 | 0.005554 |
S | 1118 | D1118Y | Gac | Tac | 17 | 17 | B.1.265 | 0.021601 |
S | 1118 | D1118H | Gac | Cac | 17 | 17 | P.1.17 | 0.00275 |
S | 1118 | D1118D | gaC | gaT | 16 | 16 | B.1.177 | 0.000211 |
S | 1118 | D1118H | Gac | Cac | 16 | 16 | B.1.258.17 | 0.001664 |
S | 1118 | D1118H | Gac | Cac | 16 | 16 | B.1.628 | 0.005638 |
S | 1118 | D1118Y | Gac | Tac | 16 | 16 | P.2 | 0.002986 |
S | 1118 | D1118H | Gac | Cac | 15 | 15 | B.1.1.220 | 0.027881 |
S | 1118 | D1118Y | Gac | Tac | 15 | 15 | B.1.177 | 0.000198 |
S | 1118 | D1118H | Gac | Cac | 15 | 15 | B.1.623 | 0.008047 |
S | 1118 | D1118Y | Gac | Tac | 14 | 14 | AY.121 | 0.001894 |
S | 1118 | D1118H | Gac | Cac | 14 | 14 | B.1.1.312 | 0.026769 |
S | 1118 | D1118H | Gac | Cac | 14 | 14 | B.1.1.50 | 0.009504 |
S | 1118 | D1118H | Gac | Cac | 14 | 14 | B.1.1.528 | 0.067308 |
S | 1118 | D1118D | gaC | gaT | 14 | 14 | B.1.165 | 0.166667 |
S | 1118 | D1118Y | Gac | Tac | 14 | 14 | B.1.221 | 0.000994 |
S | 1118 | D1118Y | Gac | Tac | 13 | 13 | B.1.429 | 0.000306 |
S | 1118 | D1118H | Gac | Cac | 13 | 13 | P.1.12 | 0.006292 |
S | 1118 | D1118H | Gac | Cac | 12 | 12 | B.1.1.39 | 0.006116 |
S | 1118 | D1118Y | Gac | Tac | 11 | 11 | AY.102 | 0.000292 |
S | 1118 | D1118D | gaC | gaT | 11 | 11 | AY.43 | 0.000049 |
S | 1118 | D1118D | gaC | gaT | 11 | 11 | B.1.1.318 | 0.003319 |
S | 1118 | D1118H | Gac | Cac | 11 | 11 | B.1.427 | 0.000555 |
S | 1118 | D1118H | Gac | Cac | 11 | 11 | B.1.637 | 0.000804 |
S | 1118 | D1118H | Gac | Cac | 11 | 11 | P.1.10 | 0.002964 |
S | 1118 | D1118Y | Gac | Tac | 10 | 10 | AY.75 | 0.00056 |
S | 1118 | D1118H | Gac | Cac | 10 | 10 | B.1.1.507 | 0.086957 |
S | 1118 | D1118H | Gac | Cac | 10 | 10 | B.1.160 | 0.000312 |
S | 1118 | D1118D | gaC | gaT | 10 | 10 | B.1.351 | 0.000297 |
S | 1118 | D1118D | gaC | gaT | 10 | 10 | B.1.427 | 0.000505 |
S | 1118 | D1118G | gAc | gGc | 10 | 10 | B.1.466.1 | 0.071942 |
S | 1118 | D1118Y | Gac | Tac | 9 | 9 | AY.25 | 0.000054 |
S | 1118 | D1118D | gaC | gaT | 9 | 9 | AY.3.1 | 0.000767 |
S | 1118 | D1118H | Gac | Cac | 9 | 9 | AY.30 | 0.003562 |
S | 1118 | D1118Y | Gac | Tac | 9 | 9 | AY.54 | 0.000858 |
S | 1118 | D1118H | Gac | Cac | 9 | 9 | B.1.411 | 0.033333 |
S | 1118 | D1118H | Gac | Cac | 9 | 9 | C.36.3 | 0.005105 |
S | 1118 | D1118H | Gac | Cac | 8 | 8 | AY.103 | 0.00005 |
S | 1118 | D1118D | gaC | gaT | 8 | 8 | AY.20 | 0.000311 |
S | 1118 | D1118H | Gac | Cac | 8 | 8 | AY.23 | 0.000558 |
S | 1118 | D1118H | Gac | Cac | 8 | 8 | AY.41 | 0.002352 |
S | 1118 | D1118D | gaC | gaT | 8 | 8 | AY.44 | 0.000049 |
S | 1118 | D1118A | gAc | gCc | 8 | 8 | B.1.240 | 0.001725 |
S | 1118 | D1118Y | Gac | Tac | 8 | 8 | B.1.525 | 0.000905 |
S | 1118 | D1118H | Gac | Cac | 8 | 8 | P.1.14 | 0.000382 |
S | 1118 | D1118Y | Gac | Tac | 8 | 8 | Q.1 | 0.001011 |
S | 1118 | D1118H | Gac | Cac | 6 | 7 | 0.333333 | |
S | 1118 | D1118H | GaC | CaT | 1 | 7 | 0.055556 | |
S | 1118 | D1118N | Gac | Aac | 7 | 7 | All | 0.000001 |
S | 1118 | D1118D | gaC | gaT | 7 | 7 | AY.29 | 0.00011 |
S | 1118 | D1118Y | Gac | Tac | 7 | 7 | B.1.602 | 0.045752 |
S | 1118 | D1118H | Gac | Cac | 7 | 7 | P.1.13 | 0.006289 |
S | 1118 | D1118H | Gac | Cac | 7 | 7 | P.1.15 | 0.001626 |
S | 1118 | D1118Q | GaC | CaA | 6 | 6 | All | 0.000001 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | AY.120.1 | 0.001926 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | AY.20 | 0.000233 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | AY.29 | 0.000095 |
S | 1118 | D1118D | gaC | gaT | 6 | 6 | AY.3 | 0.00006 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | AY.39 | 0.000148 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | B.1.1.222 | 0.001224 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | B.1.1.25 | 0.003411 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | B.1.1.28 | 0.001867 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | B.1.1.369 | 0.002677 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | B.1.1.432 | 0.007595 |
S | 1118 | D1118Q | GaC | CaA | 6 | 6 | B.1.1.7 | 0.000005 |
S | 1118 | D1118H | Gac | Cac | 6 | 6 | B.1.139 | 0.004399 |
S | 1118 | D1118Y | Gac | Tac | 6 | 6 | B.1.232 | 0.003224 |
S | 1118 | D1118H | Gac | Cac | 6 | 6 | B.1.243 | 0.000418 |
S | 1118 | D1118H | Gac | Cac | 6 | 6 | B.1.311 | 0.001647 |
S | 1118 | D1118E | gaC | gaG | 6 | 6 | B.1.617.2 | 0.000023 |
S | 1118 | D1118H | Gac | Cac | 6 | 6 | B.4.1 | 0.113208 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | A | 0.001935 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | A.2.5 | 0.002495 |
S | 1118 | D1118R | GAc | CGc | 5 | 5 | All | 0.000001 |
S | 1118 | D1118Y | Gac | Tac | 5 | 5 | AY.3 | 0.00005 |
S | 1118 | D1118Y | Gac | Tac | 5 | 5 | AY.42 | 0.000201 |
S | 1118 | D1118D | gaC | gaT | 5 | 5 | B.1 | 0.000046 |
S | 1118 | D1118D | gaC | gaT | 5 | 5 | B.1.1 | 0.000091 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.1.1 | 0.001633 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.1.28 | 0.001556 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.1.317 | 0.002058 |
S | 1118 | D1118del | GAC | --- | 5 | 5 | B.1.1.7 | 0.000004 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.1.70 | 0.001705 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.237 | 0.024876 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.258 | 0.000333 |
S | 1118 | D1118A | gAc | gCc | 5 | 5 | B.1.36 | 0.00073 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.369 | 0.001426 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | B.1.617.1 | 0.000645 |
S | 1118 | D1118H | Gac | Cac | 5 | 5 | R.1 | 0.00045 |
S | 1118 | D1118L | GAC | CTT | 3 | 4 | 0.166667 | |
S | 1118 | D1118L | GAc | CTc | 1 | 4 | 0.055556 | |
S | 1118 | D1118L | GAC | CTT | 3 | 4 | All | 0.000001 |
S | 1118 | D1118L | GAc | CTc | 1 | 4 | All | 0 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | AY.100 | 0.000184 |
S | 1118 | D1118Y | Gac | Tac | 4 | 4 | AY.100 | 0.000184 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | AY.102 | 0.000106 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | AY.26 | 0.000113 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | AY.39 | 0.000099 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | AY.47 | 0.000124 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | AY.75.1 | 0.000721 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | AY.9.2 | 0.000147 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | B.1.1.523 | 0.00625 |
S | 1118 | D1118R | GAc | CGc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | B.1.157 | 0.01194 |
S | 1118 | D1118Y | Gac | Tac | 4 | 4 | B.1.177.46 | 0.003673 |
S | 1118 | D1118Y | Gac | Tac | 4 | 4 | B.1.243 | 0.000278 |
S | 1118 | D1118D | gaC | gaT | 4 | 4 | B.1.258 | 0.000266 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | B.1.367 | 0.00317 |
S | 1118 | D1118D | gaC | gaT | 4 | 4 | B.1.429 | 0.000094 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | B.1.619 | 0.003484 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | B.1.633 | 0.166667 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | C.37 | 0.000464 |
S | 1118 | D1118Y | Gac | Tac | 4 | 4 | P.1 | 0.000063 |
S | 1118 | D1118H | Gac | Cac | 4 | 4 | P.1.7 | 0.001277 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | AY.106 | 0.001005 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | AY.117 | 0.000254 |
S | 1118 | D1118del | GAC | --- | 3 | 3 | AY.120 | 0.000112 |
S | 1118 | D1118G | gAc | gGc | 3 | 3 | AY.4 | 0.000005 |
S | 1118 | D1118del | GAC | --- | 3 | 3 | AY.4 | 0.000005 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | AY.4 | 0.000005 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | AY.42 | 0.000121 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | AY.45 | 0.000365 |
S | 1118 | D1118G | gAc | gGc | 3 | 3 | AY.5 | 0.000062 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | AY.69 | 0.00056 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | AY.74 | 0.000347 |
S | 1118 | D1118D | gaC | gaT | 3 | 3 | AY.9.2 | 0.00011 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.1.10 | 0.003344 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | B.1.1.176 | 0.001318 |
S | 1118 | D1118G | gAc | gGc | 3 | 3 | B.1.1.198 | 0.004405 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.1.205 | 0.011152 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | B.1.1.234 | 0.036145 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.1.294 | 0.003797 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.1.306 | 0.001315 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.1.348 | 0.002389 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.1.370 | 0.037975 |
S | 1118 | D1118N | Gac | Aac | 3 | 3 | B.1.1.7 | 0.000003 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.214 | 0.010989 |
S | 1118 | D1118D | gaC | gaT | 3 | 3 | B.1.221 | 0.000213 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.234 | 0.000396 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | B.1.245 | 0.09375 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.330 | 0.085714 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | B.1.351 | 0.000089 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | B.1.36 | 0.000438 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.36 | 0.000438 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | B.1.427 | 0.000151 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.533 | 0.028846 |
S | 1118 | D1118D | gaC | gaT | 3 | 3 | B.1.575 | 0.00091 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.575 | 0.00091 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.595 | 0.000783 |
S | 1118 | D1118Y | Gac | Tac | 3 | 3 | B.1.596 | 0.000261 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.599 | 0.010949 |
S | 1118 | D1118D | gaC | gaT | 3 | 3 | B.1.621 | 0.000266 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | B.1.625 | 0.007059 |
S | 1118 | D1118D | gaC | gaT | 3 | 3 | B.1.628 | 0.001057 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | P.1.10.1 | 0.02439 |
S | 1118 | D1118H | Gac | Cac | 3 | 3 | P.1.6 | 0.005837 |
S | 1118 | D1118F | GAc | TTc | 2 | 2 | 0.111111 | |
S | 1118 | D1118del | GAC | --- | 2 | 2 | 0.111111 | |
S | 1118 | D1118N | Gac | Aac | 2 | 2 | 0.111111 | |
S | 1118 | D1118V | gAC | gTT | 1 | 2 | 0.055556 | |
S | 1118 | D1118V | gAc | gTc | 1 | 2 | 0.055556 | |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | A | 0.000774 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | A.2.5.1 | 0.009615 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | A.23.1 | 0.001408 |
S | 1118 | D1118F | GAc | TTc | 2 | 2 | All | 0 |
S | 1118 | D1118del1 | gaC | ga- | 2 | 2 | All | 0 |
S | 1118 | D1118G | gAc | gGc | 2 | 2 | AY.100 | 0.000092 |
S | 1118 | D1118V | gAc | gTc | 2 | 2 | AY.102 | 0.000053 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | AY.116 | 0.000574 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.118 | 0.000125 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | AY.120 | 0.000074 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | AY.3.1 | 0.000171 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | AY.33 | 0.000134 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.34.1 | 0.00102 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.37 | 0.000632 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | AY.39 | 0.000049 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.39.2 | 0.003082 |
S | 1118 | D1118E | gaC | gaA | 2 | 2 | AY.4.2 | 0.000043 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.4.3 | 0.001684 |
S | 1118 | D1118del | GAC | --- | 2 | 2 | AY.4.5 | 0.000215 |
S | 1118 | D1118A | gAc | gCc | 2 | 2 | AY.42 | 0.00008 |
S | 1118 | D1118E | gaC | gaA | 2 | 2 | AY.44 | 0.000012 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.46 | 0.000208 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | AY.66 | 0.002139 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.75 | 0.000112 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | AY.86 | 0.00166 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | AY.9.1 | 0.000167 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | AY.95 | 0.001522 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | AY.96 | 0.004149 |
S | 1118 | D1118E | gaC | gaG | 1 | 2 | B.1 | 0.000009 |
S | 1118 | D1118E | gaC | gaA | 1 | 2 | B.1 | 0.000009 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | B.1.1.1 | 0.000653 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.141 | 0.004024 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.216 | 0.001781 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.269 | 0.002706 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.291 | 0.001485 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.299 | 0.02439 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.318 | 0.000604 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.337 | 0.007194 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.389 | 0.012121 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.524 | 0.041667 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.1.525 | 0.010929 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | B.1.1.54 | 0.006042 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | B.1.111 | 0.00235 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.170 | 0.008621 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.177.41 | 0.005 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.177.42 | 0.001789 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.177.82 | 0.000955 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.214.2 | 0.001199 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | B.1.240 | 0.000431 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | B.1.241 | 0.001623 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.258.14 | 0.001961 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.351.2 | 0.000605 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | B.1.351.5 | 0.001199 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | B.1.36.8 | 0.002 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | B.1.369 | 0.00057 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.380 | 0.013245 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.462 | 0.014493 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.466.2 | 0.000782 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.470 | 0.002809 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | B.1.471 | 0.005464 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.525 | 0.000226 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | B.1.561 | 0.000794 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | B.1.568 | 0.002222 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.580 | 0.00813 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | B.1.596 | 0.000174 |
S | 1118 | D1118A | gAc | gCc | 2 | 2 | B.1.617.2 | 0.000008 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.621 | 0.000177 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.627 | 0.00404 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.631 | 0.006734 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.1.78 | 0.017094 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | B.55 | 0.0059 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | C.16 | 0.002121 |
S | 1118 | D1118H | Gac | Cac | 2 | 2 | C.36 | 0.001821 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | D.2 | 0.00015 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | D.2 | 0.00015 |
S | 1118 | D1118D | gaC | gaT | 2 | 2 | P.1.12 | 0.000968 |
S | 1118 | D1118Y | Gac | Tac | 2 | 2 | P.6 | 0.006289 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | 0.055556 | |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | A.2.5.2 | 0.001572 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | A.27 | 0.001656 |
S | 1118 | D1118V | gAc | gTc | 1 | 1 | A.28 | 0.002646 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | A.7 | 0.055556 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AD.1 | 0.004115 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AD.2 | 0.000219 |
S | 1118 | D1118I | GAc | ATc | 1 | 1 | All | 0 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AT.1 | 0.005128 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AW.1 | 0.003049 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.10 | 0.00053 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.10 | 0.00053 |
S | 1118 | D1118E | gaC | gaG | 1 | 1 | AY.100 | 0.000046 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.102 | 0.000027 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.102 | 0.000027 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.113 | 0.000142 |
S | 1118 | D1118E | gaC | gaA | 1 | 1 | AY.113 | 0.000142 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.116 | 0.000287 |
S | 1118 | D1118A | gAc | gCc | 1 | 1 | AY.118 | 0.000063 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | AY.118 | 0.000063 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.120 | 0.000037 |
S | 1118 | D1118E | gaC | gaA | 1 | 1 | AY.120 | 0.000037 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.14 | 0.000088 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.19 | 0.00114 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.20 | 0.000039 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.23 | 0.00007 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.24 | 0.000431 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.29 | 0.000016 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.29 | 0.000016 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.29.1 | 0.000221 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.3 | 0.00001 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.3.1 | 0.000085 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.32 | 0.000532 |
S | 1118 | D1118A | gAc | gCc | 1 | 1 | AY.33 | 0.000067 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | AY.33 | 0.000067 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.33 | 0.000067 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.34 | 0.000097 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.35 | 0.000233 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.36 | 0.000148 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.38 | 0.000499 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.39 | 0.000025 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.39.1 | 0.00004 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.39.1 | 0.00004 |
S | 1118 | D1118E | gaC | gaG | 1 | 1 | AY.4 | 0.000002 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.4.2 | 0.000022 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.40 | 0.000964 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.42 | 0.00004 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1118 | D1118I | GAc | ATc | 1 | 1 | AY.43 | 0.000004 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.43 | 0.000004 |
S | 1118 | D1118V | gAc | gTc | 1 | 1 | AY.44 | 0.000006 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | AY.44 | 0.000006 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.45 | 0.000122 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.46 | 0.000104 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.46.1 | 0.001027 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.46.4 | 0.000165 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.5 | 0.000021 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.5.1 | 0.003759 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.5.4 | 0.000277 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.52 | 0.000814 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.54 | 0.000095 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.57 | 0.000656 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.58 | 0.000907 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.61 | 0.000105 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.61 | 0.000105 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.61 | 0.000105 |
S | 1118 | D1118E | gaC | gaA | 1 | 1 | AY.61 | 0.000105 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.62 | 0.000436 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.65 | 0.000533 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | AY.67 | 0.000464 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.68 | 0.000274 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.7 | 0.000196 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.7 | 0.000196 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.7.1 | 0.000113 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.71 | 0.000475 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.75 | 0.000056 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.77 | 0.001127 |
S | 1118 | D1118A | gAc | gCc | 1 | 1 | AY.84 | 0.000437 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.9 | 0.000068 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | AY.9 | 0.000068 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.9.1 | 0.000084 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | AY.9.2 | 0.000037 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.92 | 0.000287 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AY.96 | 0.002075 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | AY.98.1 | 0.000048 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | AZ.3 | 0.00152 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B | 0.000128 |
S | 1118 | D1118del1 | gaC | ga- | 1 | 1 | B.1 | 0.000009 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | B.1 | 0.000009 |
S | 1118 | D1118R | GAc | CGc | 1 | 1 | B.1 | 0.000009 |
S | 1118 | D1118A | gAc | gCc | 1 | 1 | B.1 | 0.000009 |
S | 1118 | D1118N | Gac | Aac | 1 | 1 | B.1.1 | 0.000018 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.135 | 0.004695 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.142 | 0.017544 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.160 | 0.02381 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.171 | 0.003676 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.174 | 0.003378 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.187 | 0.00885 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.189 | 0.001513 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.205 | 0.003717 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.217 | 0.003636 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.220 | 0.001859 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.221 | 0.010101 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.222 | 0.000204 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.226 | 0.005814 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.231 | 0.003096 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.236 | 0.006897 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.237 | 0.005405 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.243 | 0.004082 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.25 | 0.000569 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.263 | 0.001558 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.269 | 0.001353 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.275 | 0.011236 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.280 | 0.003086 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.284 | 0.000107 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.294 | 0.001266 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.298 | 0.000862 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.300 | 0.010753 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | B.1.1.306 | 0.000438 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.311 | 0.000358 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.317 | 0.000412 |
S | 1118 | D1118E | gaC | gaA | 1 | 1 | B.1.1.326 | 0.001761 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.337 | 0.003597 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.351 | 0.002793 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.365 | 0.005587 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.372 | 0.000689 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.374 | 0.002375 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.389 | 0.006061 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.402 | 0.011111 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.416 | 0.000905 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.432 | 0.001266 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.437 | 0.010417 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.44 | 0.00241 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.440 | 0.011765 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.448 | 0.002033 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.462 | 0.008621 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.487 | 0.005587 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.526 | 0.003546 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.1.526 | 0.003546 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.54 | 0.003021 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.55 | 0.012987 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.63 | 0.000386 |
S | 1118 | D1118V | gAc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.89 | 0.006061 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.1.99 | 0.02381 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.1.99 | 0.02381 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.110.3 | 0.000718 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.111 | 0.001175 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.111 | 0.001175 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.13 | 0.002375 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.160 | 0.000031 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.160.14 | 0.002119 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.160.16 | 0.000929 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.21 | 0.000076 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.31 | 0.011494 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.44 | 0.000519 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.51 | 0.004566 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.52 | 0.001757 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.54 | 0.000606 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.60 | 0.000218 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.67 | 0.007634 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.8 | 0.000752 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.81 | 0.000189 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.177.81 | 0.000189 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.177.86 | 0.000183 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.178 | 0.02381 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.179 | 0.003759 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.190 | 0.01 |
S | 1118 | D1118E | gaC | gaA | 1 | 1 | B.1.2 | 0.000009 |
S | 1118 | D1118A | gAc | gCc | 1 | 1 | B.1.2 | 0.000009 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 1118 | D1118del1 | gaC | ga- | 1 | 1 | B.1.2 | 0.000009 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.206 | 0.000816 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.214.3 | 0.007143 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.218 | 0.005155 |
S | 1118 | D1118N | Gac | Aac | 1 | 1 | B.1.221 | 0.000071 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | B.1.221 | 0.000071 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.232 | 0.000537 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.235 | 0.002519 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.239 | 0.001221 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.258.11 | 0.000396 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.265 | 0.001271 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.324 | 0.001605 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.326 | 0.007576 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.340 | 0.004292 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.349 | 0.000715 |
S | 1118 | D1118E | gaC | gaG | 1 | 1 | B.1.351.2 | 0.000303 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.351.5 | 0.0006 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.36 | 0.000146 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.36.10 | 0.004785 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.36.16 | 0.001425 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.36.16 | 0.001425 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.36.39 | 0.002217 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.399 | 0.001934 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.400 | 0.000429 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.415.1 | 0.007576 |
S | 1118 | D1118A | gAc | gCc | 1 | 1 | B.1.427 | 0.00005 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.433 | 0.003195 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.473 | 0.019231 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.497 | 0.000315 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.497 | 0.000315 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.499 | 0.00105 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.499 | 0.00105 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.501 | 0.007353 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.521 | 0.004975 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.521 | 0.004975 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.523 | 0.002451 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.524 | 0.001406 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.526 | 0.000024 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.530 | 0.007143 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.541 | 0.004425 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.564.1 | 0.001577 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.565 | 0.00081 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.575 | 0.000303 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.577 | 0.000687 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.580 | 0.004065 |
S | 1118 | D1118E | gaC | gaA | 1 | 1 | B.1.580 | 0.004065 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.588 | 0.00091 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.595 | 0.000261 |
S | 1118 | D1118E | gaC | gaA | 1 | 1 | B.1.596 | 0.000087 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.596.1 | 0.009346 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.617.1 | 0.000129 |
S | 1118 | D1118G | gAc | gGc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1118 | D1118V | gAc | gTc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.617.3 | 0.002985 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.632 | 0.006711 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.634 | 0.003425 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.636 | 0.006711 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.1.637 | 0.000073 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.81 | 0.021277 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.1.88.1 | 0.004808 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.15 | 0.017544 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | B.34 | 0.013699 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | B.55 | 0.00295 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | B.6 | 0.00091 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | C.1.2 | 0.004255 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | C.35 | 0.000774 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | C.36 | 0.000911 |
S | 1118 | D1118Y | Gac | Tac | 1 | 1 | C.37 | 0.000116 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | C.37 | 0.000116 |
S | 1118 | D1118H | Gac | Cac | 1 | 1 | N.5 | 0.001767 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | P.1 | 0.000016 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | P.1.15 | 0.000232 |
S | 1118 | D1118D | gaC | gaT | 1 | 1 | P.1.16 | 0.000374 |
S | 1118 | D1118del | GAC | --- | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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