CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1118

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1118D1118HnonsynGacCac114453211443770.99986524914-24916
S1118D1118HnonsynGaCCaT11445321550.00013542724914-24916
S1118D1118YnonsynGacTac45234523124914-24916
S1118D1118DsyngaCgaT602602124914-24916
S1118D1118AnonsyngAcgCc6767124914-24916
S1118D1118GnonsyngAcgGc5050124914-24916
S1118D1118VnonsyngAcgTc34330.97058824914-24916
S1118D1118VnonsyngACgTT3410.029411824914-24916
S1118D1118deldelGAC---3030124914-24916
S1118D1118EnonsyngaCgaA22120.54545524914-24916
S1118D1118EnonsyngaCgaG22100.45454524914-24916
S1118D1118NnonsynGacAac77124914-24916
S1118D1118QnonsynGaCCaA66124914-24916
S1118D1118RnonsynGAcCGc55124914-24916
S1118D1118LnonsynGACCTT430.7524914-24916
S1118D1118LnonsynGAcCTc410.2524914-24916
S1118D1118del1delgaCga-22124914-24916
S1118D1118FnonsynGAcTTc22124914-24916
S1118D1118InonsynGAcATc11124914-24916

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1118D1118HGacCac11443771144532All0.218876
S1118D1118HGaCCaT1551144532All0.00003
S1118D1118HGacCac11121801112334B.1.1.70.995649
S1118D1118HGaCCaT1541112334B.1.1.70.000138
S1118D1118HGacCac78827882Q.10.995705
S1118D1118HGacCac68886888Q.30.998985
S1118D1118HGacCac59375937Q.80.979057
S1118D1118YGacTac45234523All0.000865
S1118D1118YGacTac28082808B.1.1.70.002514
S1118D1118HGacCac21942194Q.40.997726
S1118D1118HGacCac21922192B.1.10.039765
S1118D1118HGacCac16281628Q.20.998773
S1118D1118HGacCac13341334B.10.012219
S1118D1118HGacCac10271027B.1.6200.971618
S1118D1118HGacCac895895Q.70.994444
S1118D1118DgaCgaT602602All0.000115
S1118D1118YGacTac261261B.1.2580.017369
S1118D1118HGacCac180180B.1.177.730.101925
S1118D1118YGacTac179179AY.116.10.055746
S1118D1118HGacCac168168P.10.002647
S1118D1118HGacCac151151Q.61
S1118D1118HGacCac141141B.1.5760.127833
S1118D1118YGacTac127127B.1.617.20.000478
S1118D1118HGacCac114114B.1.1770.001501
S1118D1118DgaCgaT105105AY.50.002168
S1118D1118YGacTac8686AY.470.002675
S1118D1118YGacTac8282B.1.1.3290.315385
S1118D1118HGacCac8282B.1.3750.067213
S1118D1118HGacCac7979B.1.5960.006884
S1118D1118AgAcgCc6767All0.000013
S1118D1118YGacTac6565B.1.20.000572
S1118D1118YGacTac6161Q.80.010059
S1118D1118HGacCac5959Q.51
S1118D1118YGacTac5555AY.50.001136
S1118D1118YGacTac5454AY.40.000084
S1118D1118HGacCac5353B.1.20.000467
S1118D1118GgAcgGc5050All0.00001
S1118D1118DgaCgaT4949AY.250.000295
S1118D1118YGacTac4949B.1.1.5190.001946
S1118D1118DgaCgaT4949B.1.20.000431
S1118D1118HGacCac4848B.1.1.2140.002662
S1118D1118YGacTac4747B.10.00043
S1118D1118HGacCac4545XA1
S1118D1118AgAcgCc4444AY.40.000068
S1118D1118HGacCac4141B0.00524
S1118D1118DgaCgaT4141P.10.000646
S1118D1118DgaCgaT3838AY.40.000059
S1118D1118YGacTac3737AY.440.000225
S1118D1118YGacTac3737B.1.3670.029319
S1118D1118DgaCgaT3636AY.1030.000224
S1118D1118HGacCac3636B.1.1.4090.101983
S1118D1118HGacCac3535B.1.617.20.000132
S1118D1118HGacCac3535P.1.10.011118
S1118D1118VgAcgTc3334All0.000006
S1118D1118VgACgTT134All0
S1118D1118HGacCac3434B.1.177.70.005605
S1118D1118HGacCac3434B.1.5260.000799
S1118D1118HGacCac3232AY.430.000142
S1118D1118HGacCac3131B.1.6090.014861
S1118D1118delGAC---3030All0.000006
S1118D1118HGacCac3030B.1.3510.000892
S1118D1118DgaCgaT3030B.1.617.20.000113
S1118D1118YGacTac2828AY.330.00187
S1118D1118YGacTac2828AY.430.000124
S1118D1118DgaCgaT2828B.1.1.500.019009
S1118D1118YGacTac2626AY.980.002054
S1118D1118VgAcgTc2626B.6.60.023111
S1118D1118HGacCac2626P.1.160.009727
S1118D1118YGacTac2525B.1.1.630.009645
S1118D1118YGacTac2424AY.1030.000149
S1118D1118HGacCac2424B.1.1.1610.084806
S1118D1118EgaCgaA1222All0.000002
S1118D1118EgaCgaG1022All0.000002
S1118D1118YGacTac2222AY.700.004587
S1118D1118YGacTac2222B.1.10.000399
S1118D1118HGacCac2222B.1.4290.000518
S1118D1118HGacCac2121AY.440.000128
S1118D1118DgaCgaT2121AY.9.10.001758
S1118D1118HGacCac2020B.1.1.5190.000794
S1118D1118HGacCac2020B.1.2210.001421
S1118D1118YGacTac1717AY.1190.0006
S1118D1118GgAcgGc1717AY.440.000103
S1118D1118YGacTac1717B.1.1.10.005554
S1118D1118YGacTac1717B.1.2650.021601
S1118D1118HGacCac1717P.1.170.00275
S1118D1118DgaCgaT1616B.1.1770.000211
S1118D1118HGacCac1616B.1.258.170.001664
S1118D1118HGacCac1616B.1.6280.005638
S1118D1118YGacTac1616P.20.002986
S1118D1118HGacCac1515B.1.1.2200.027881
S1118D1118YGacTac1515B.1.1770.000198
S1118D1118HGacCac1515B.1.6230.008047
S1118D1118YGacTac1414AY.1210.001894
S1118D1118HGacCac1414B.1.1.3120.026769
S1118D1118HGacCac1414B.1.1.500.009504
S1118D1118HGacCac1414B.1.1.5280.067308
S1118D1118DgaCgaT1414B.1.1650.166667
S1118D1118YGacTac1414B.1.2210.000994
S1118D1118YGacTac1313B.1.4290.000306
S1118D1118HGacCac1313P.1.120.006292
S1118D1118HGacCac1212B.1.1.390.006116
S1118D1118YGacTac1111AY.1020.000292
S1118D1118DgaCgaT1111AY.430.000049
S1118D1118DgaCgaT1111B.1.1.3180.003319
S1118D1118HGacCac1111B.1.4270.000555
S1118D1118HGacCac1111B.1.6370.000804
S1118D1118HGacCac1111P.1.100.002964
S1118D1118YGacTac1010AY.750.00056
S1118D1118HGacCac1010B.1.1.5070.086957
S1118D1118HGacCac1010B.1.1600.000312
S1118D1118DgaCgaT1010B.1.3510.000297
S1118D1118DgaCgaT1010B.1.4270.000505
S1118D1118GgAcgGc1010B.1.466.10.071942
S1118D1118YGacTac99AY.250.000054
S1118D1118DgaCgaT99AY.3.10.000767
S1118D1118HGacCac99AY.300.003562
S1118D1118YGacTac99AY.540.000858
S1118D1118HGacCac99B.1.4110.033333
S1118D1118HGacCac99C.36.30.005105
S1118D1118HGacCac88AY.1030.00005
S1118D1118DgaCgaT88AY.200.000311
S1118D1118HGacCac88AY.230.000558
S1118D1118HGacCac88AY.410.002352
S1118D1118DgaCgaT88AY.440.000049
S1118D1118AgAcgCc88B.1.2400.001725
S1118D1118YGacTac88B.1.5250.000905
S1118D1118HGacCac88P.1.140.000382
S1118D1118YGacTac88Q.10.001011
S1118D1118HGacCac670.333333
S1118D1118HGaCCaT170.055556
S1118D1118NGacAac77All0.000001
S1118D1118DgaCgaT77AY.290.00011
S1118D1118YGacTac77B.1.6020.045752
S1118D1118HGacCac77P.1.130.006289
S1118D1118HGacCac77P.1.150.001626
S1118D1118QGaCCaA66All0.000001
S1118D1118YGacTac66AY.120.10.001926
S1118D1118YGacTac66AY.200.000233
S1118D1118YGacTac66AY.290.000095
S1118D1118DgaCgaT66AY.30.00006
S1118D1118YGacTac66AY.390.000148
S1118D1118YGacTac66B.1.1.2220.001224
S1118D1118YGacTac66B.1.1.250.003411
S1118D1118YGacTac66B.1.1.280.001867
S1118D1118YGacTac66B.1.1.3690.002677
S1118D1118YGacTac66B.1.1.4320.007595
S1118D1118QGaCCaA66B.1.1.70.000005
S1118D1118HGacCac66B.1.1390.004399
S1118D1118YGacTac66B.1.2320.003224
S1118D1118HGacCac66B.1.2430.000418
S1118D1118HGacCac66B.1.3110.001647
S1118D1118EgaCgaG66B.1.617.20.000023
S1118D1118HGacCac66B.4.10.113208
S1118D1118HGacCac55A0.001935
S1118D1118HGacCac55A.2.50.002495
S1118D1118RGAcCGc55All0.000001
S1118D1118YGacTac55AY.30.00005
S1118D1118YGacTac55AY.420.000201
S1118D1118DgaCgaT55B.10.000046
S1118D1118DgaCgaT55B.1.10.000091
S1118D1118HGacCac55B.1.1.10.001633
S1118D1118HGacCac55B.1.1.280.001556
S1118D1118HGacCac55B.1.1.3170.002058
S1118D1118delGAC---55B.1.1.70.000004
S1118D1118HGacCac55B.1.1.700.001705
S1118D1118HGacCac55B.1.2370.024876
S1118D1118HGacCac55B.1.2580.000333
S1118D1118AgAcgCc55B.1.360.00073
S1118D1118HGacCac55B.1.3690.001426
S1118D1118HGacCac55B.1.617.10.000645
S1118D1118HGacCac55R.10.00045
S1118D1118LGACCTT340.166667
S1118D1118LGAcCTc140.055556
S1118D1118LGACCTT34All0.000001
S1118D1118LGAcCTc14All0
S1118D1118HGacCac44AY.1000.000184
S1118D1118YGacTac44AY.1000.000184
S1118D1118HGacCac44AY.1020.000106
S1118D1118HGacCac44AY.260.000113
S1118D1118HGacCac44AY.390.000099
S1118D1118HGacCac44AY.470.000124
S1118D1118HGacCac44AY.75.10.000721
S1118D1118HGacCac44AY.9.20.000147
S1118D1118HGacCac44B.1.1.5230.00625
S1118D1118RGAcCGc44B.1.1.70.000004
S1118D1118HGacCac44B.1.1570.01194
S1118D1118YGacTac44B.1.177.460.003673
S1118D1118YGacTac44B.1.2430.000278
S1118D1118DgaCgaT44B.1.2580.000266
S1118D1118HGacCac44B.1.3670.00317
S1118D1118DgaCgaT44B.1.4290.000094
S1118D1118HGacCac44B.1.6190.003484
S1118D1118HGacCac44B.1.6330.166667
S1118D1118HGacCac44C.370.000464
S1118D1118YGacTac44P.10.000063
S1118D1118HGacCac44P.1.70.001277
S1118D1118YGacTac33AY.1060.001005
S1118D1118YGacTac33AY.1170.000254
S1118D1118delGAC---33AY.1200.000112
S1118D1118GgAcgGc33AY.40.000005
S1118D1118delGAC---33AY.40.000005
S1118D1118HGacCac33AY.40.000005
S1118D1118HGacCac33AY.420.000121
S1118D1118YGacTac33AY.450.000365
S1118D1118GgAcgGc33AY.50.000062
S1118D1118YGacTac33AY.690.00056
S1118D1118YGacTac33AY.740.000347
S1118D1118DgaCgaT33AY.9.20.00011
S1118D1118HGacCac33B.1.1.100.003344
S1118D1118YGacTac33B.1.1.1760.001318
S1118D1118GgAcgGc33B.1.1.1980.004405
S1118D1118HGacCac33B.1.1.2050.011152
S1118D1118YGacTac33B.1.1.2340.036145
S1118D1118HGacCac33B.1.1.2940.003797
S1118D1118HGacCac33B.1.1.3060.001315
S1118D1118HGacCac33B.1.1.3480.002389
S1118D1118HGacCac33B.1.1.3700.037975
S1118D1118NGacAac33B.1.1.70.000003
S1118D1118HGacCac33B.1.2140.010989
S1118D1118DgaCgaT33B.1.2210.000213
S1118D1118HGacCac33B.1.2340.000396
S1118D1118YGacTac33B.1.2450.09375
S1118D1118HGacCac33B.1.3300.085714
S1118D1118YGacTac33B.1.3510.000089
S1118D1118YGacTac33B.1.360.000438
S1118D1118HGacCac33B.1.360.000438
S1118D1118YGacTac33B.1.4270.000151
S1118D1118HGacCac33B.1.5330.028846
S1118D1118DgaCgaT33B.1.5750.00091
S1118D1118HGacCac33B.1.5750.00091
S1118D1118HGacCac33B.1.5950.000783
S1118D1118YGacTac33B.1.5960.000261
S1118D1118HGacCac33B.1.5990.010949
S1118D1118DgaCgaT33B.1.6210.000266
S1118D1118HGacCac33B.1.6250.007059
S1118D1118DgaCgaT33B.1.6280.001057
S1118D1118HGacCac33P.1.10.10.02439
S1118D1118HGacCac33P.1.60.005837
S1118D1118FGAcTTc220.111111
S1118D1118delGAC---220.111111
S1118D1118NGacAac220.111111
S1118D1118VgACgTT120.055556
S1118D1118VgAcgTc120.055556
S1118D1118YGacTac22A0.000774
S1118D1118YGacTac22A.2.5.10.009615
S1118D1118DgaCgaT22A.23.10.001408
S1118D1118FGAcTTc22All0
S1118D1118del1gaCga-22All0
S1118D1118GgAcgGc22AY.1000.000092
S1118D1118VgAcgTc22AY.1020.000053
S1118D1118YGacTac22AY.1160.000574
S1118D1118HGacCac22AY.1180.000125
S1118D1118YGacTac22AY.1200.000074
S1118D1118YGacTac22AY.3.10.000171
S1118D1118DgaCgaT22AY.330.000134
S1118D1118HGacCac22AY.34.10.00102
S1118D1118HGacCac22AY.370.000632
S1118D1118DgaCgaT22AY.390.000049
S1118D1118HGacCac22AY.39.20.003082
S1118D1118EgaCgaA22AY.4.20.000043
S1118D1118HGacCac22AY.4.30.001684
S1118D1118delGAC---22AY.4.50.000215
S1118D1118AgAcgCc22AY.420.00008
S1118D1118EgaCgaA22AY.440.000012
S1118D1118HGacCac22AY.460.000208
S1118D1118DgaCgaT22AY.660.002139
S1118D1118HGacCac22AY.750.000112
S1118D1118YGacTac22AY.860.00166
S1118D1118YGacTac22AY.9.10.000167
S1118D1118HGacCac22AY.950.001522
S1118D1118DgaCgaT22AY.960.004149
S1118D1118EgaCgaG12B.10.000009
S1118D1118EgaCgaA12B.10.000009
S1118D1118DgaCgaT22B.1.1.10.000653
S1118D1118HGacCac22B.1.1.1410.004024
S1118D1118HGacCac22B.1.1.2160.001781
S1118D1118HGacCac22B.1.1.2690.002706
S1118D1118HGacCac22B.1.1.2910.001485
S1118D1118HGacCac22B.1.1.2990.02439
S1118D1118HGacCac22B.1.1.3180.000604
S1118D1118HGacCac22B.1.1.3370.007194
S1118D1118HGacCac22B.1.1.3890.012121
S1118D1118DgaCgaT22B.1.1.5190.000079
S1118D1118HGacCac22B.1.1.5240.041667
S1118D1118HGacCac22B.1.1.5250.010929
S1118D1118YGacTac22B.1.1.540.006042
S1118D1118YGacTac22B.1.1110.00235
S1118D1118HGacCac22B.1.1700.008621
S1118D1118HGacCac22B.1.177.410.005
S1118D1118HGacCac22B.1.177.420.001789
S1118D1118HGacCac22B.1.177.820.000955
S1118D1118HGacCac22B.1.214.20.001199
S1118D1118DgaCgaT22B.1.2400.000431
S1118D1118DgaCgaT22B.1.2410.001623
S1118D1118HGacCac22B.1.258.140.001961
S1118D1118HGacCac22B.1.351.20.000605
S1118D1118YGacTac22B.1.351.50.001199
S1118D1118YGacTac22B.1.36.80.002
S1118D1118YGacTac22B.1.3690.00057
S1118D1118HGacCac22B.1.3800.013245
S1118D1118HGacCac22B.1.4620.014493
S1118D1118HGacCac22B.1.466.20.000782
S1118D1118HGacCac22B.1.4700.002809
S1118D1118DgaCgaT22B.1.4710.005464
S1118D1118HGacCac22B.1.5250.000226
S1118D1118YGacTac22B.1.5610.000794
S1118D1118DgaCgaT22B.1.5680.002222
S1118D1118HGacCac22B.1.5800.00813
S1118D1118DgaCgaT22B.1.5960.000174
S1118D1118AgAcgCc22B.1.617.20.000008
S1118D1118HGacCac22B.1.6210.000177
S1118D1118HGacCac22B.1.6270.00404
S1118D1118HGacCac22B.1.6310.006734
S1118D1118HGacCac22B.1.780.017094
S1118D1118HGacCac22B.550.0059
S1118D1118DgaCgaT22C.160.002121
S1118D1118HGacCac22C.360.001821
S1118D1118YGacTac22D.20.00015
S1118D1118DgaCgaT22D.20.00015
S1118D1118DgaCgaT22P.1.120.000968
S1118D1118YGacTac22P.60.006289
S1118D1118DgaCgaT110.055556
S1118D1118HGacCac11A.2.5.20.001572
S1118D1118HGacCac11A.270.001656
S1118D1118VgAcgTc11A.280.002646
S1118D1118HGacCac11A.70.055556
S1118D1118YGacTac11AD.10.004115
S1118D1118HGacCac11AD.20.000219
S1118D1118IGAcATc11All0
S1118D1118HGacCac11AT.10.005128
S1118D1118YGacTac11AW.10.003049
S1118D1118YGacTac11AY.100.00053
S1118D1118HGacCac11AY.100.00053
S1118D1118EgaCgaG11AY.1000.000046
S1118D1118GgAcgGc11AY.1020.000027
S1118D1118DgaCgaT11AY.1020.000027
S1118D1118HGacCac11AY.1130.000142
S1118D1118EgaCgaA11AY.1130.000142
S1118D1118DgaCgaT11AY.1160.000287
S1118D1118AgAcgCc11AY.1180.000063
S1118D1118delGAC---11AY.1180.000063
S1118D1118DgaCgaT11AY.1190.000035
S1118D1118HGacCac11AY.1200.000037
S1118D1118EgaCgaA11AY.1200.000037
S1118D1118YGacTac11AY.120.2.10.000498
S1118D1118YGacTac11AY.140.000088
S1118D1118HGacCac11AY.190.00114
S1118D1118HGacCac11AY.200.000039
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