CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1116

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1116T1116TsynacTacC26291262440.99821224908-24910
S1116T1116TsynacTacA26291440.0016735824908-24910
S1116T1116TsynacTacG2629130.00011410724908-24910
S1116T1116NnonsynaCtaAt5505490.99818224908-24910
S1116T1116NnonsynaCTaAC55010.0018181824908-24910
S1116T1116InonsynaCtaTt1441410.97916724908-24910
S1116T1116InonsynaCTaTC14430.020833324908-24910
S1116T1116SnonsynaCtaGt6666124908-24910
S1116T1116AnonsynActGct39330.84615424908-24910
S1116T1116AnonsynAcTGcC3960.15384624908-24910
S1116T1116deldelACT---2222124908-24910
S1116T1116PnonsynAcTCcC33124908-24910
S1116T1116del1delaCta-t320.66666724908-24910
S1116T1116del1delAct-ct310.33333324908-24910
S1116T1116CnonsynACtTGt22124908-24910
S1116T1116VnonsynACTGTC210.524908-24910
S1116T1116DnonsynACtGAt210.524908-24910
S1116T1116DnonsynACTGAC210.524908-24910
S1116T1116VnonsynACtGTt210.524908-24910
S1116T1116GnonsynACTGGC11124908-24910
S1116T1116del2delACt--t11124908-24910

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1116T1116TacTacC2624426291All0.005019
S1116T1116TacTacA4426291All0.000008
S1116T1116TacTacG326291All0.000001
S1116T1116TacTacC1040210402B.1.2580.692221
S1116T1116TacTacC95949594B.1.258.170.997505
S1116T1116TacTacC24672467B.1.258.110.977804
S1116T1116TacTacC740746B.1.1.70.000662
S1116T1116TacTacA6746B.1.1.70.000005
S1116T1116NaCtaAt549550All0.000105
S1116T1116NaCTaAC1550All0
S1116T1116TacTacC522522B.1.258.70.998088
S1116T1116TacTacC368368B.1.258.220.981333
S1116T1116TacTacC322322B.10.002949
S1116T1116TacTacC289289B.1.258.40.996552
S1116T1116TacTacC200200B.1.258.91
S1116T1116NaCtaAt167167B.1.6050.994048
S1116T1116IaCtaTt141144All0.000027
S1116T1116IaCTaTC3144All0.000001
S1116T1116TacTacC141141B.1.258.191
S1116T1116TacTacC127127B.1.258.210.984496
S1116T1116TacTacC125125B.1.258.120.984252
S1116T1116TacTacC114114B.1.258.51
S1116T1116NaCtaAt106106B.1.1.70.000095
S1116T1116TacTacC8787B.1.258.100.988636
S1116T1116NaCtaAt8080AY.40.000125
S1116T1116TacTacC5473B.1.1770.000711
S1116T1116TacTacA1973B.1.1770.00025
S1116T1116SaCtaGt6666All0.000013
S1116T1116TacTacC6363B.1.258.201
S1116T1116TacTacC5151B.1.258.61
S1116T1116TacTacC5050B.1.1600.001559
S1116T1116TacTacC4242B.1.258.231
S1116T1116AActGct3339All0.000006
S1116T1116AAcTGcC639All0.000001
S1116T1116TacTacC3939B.1.10.000707
S1116T1116TacTacC3535Q.10.004421
S1116T1116IaCtaTt3434AY.40.000053
S1116T1116TacTacC3232B.1.6090.01534
S1116T1116TacTacC3131B.1.258.240.333333
S1116T1116NaCtaAt3030AY.200.001166
S1116T1116NaCtaAt2929AY.440.000177
S1116T1116TacTacC2728AY.750.001513
S1116T1116TacTacA128AY.750.000056
S1116T1116TacTacC2525B.1.2340.003299
S1116T1116SaCtaGt2424B.1.1.70.000021
S1116T1116TacTacC1523AY.1030.000093
S1116T1116TacTacA823AY.1030.00005
S1116T1116delACT---2222All0.000004
S1116T1116TacTacC1818B0.002301
S1116T1116SaCtaGt1818B.1.177.860.003302
S1116T1116NaCtaAt1616B.1.617.20.00006
S1116T1116TacTacC1515AY.430.000066
S1116T1116IaCtaTt1515B.1.1.70.000013
S1116T1116NaCtaAt1313AY.1130.001851
S1116T1116TacTacC1313B.1.1.2220.002652
S1116T1116TacTacC1313B.1.258.140.012745
S1116T1116NaCtaAt1111AY.470.000342
S1116T1116NaCtaAt1111B.10.000101
S1116T1116TacTacC1011B.1.2210.00071
S1116T1116TacTacA111B.1.2210.000071
S1116T1116TacTacC910AY.40.000014
S1116T1116TacTacA110AY.40.000002
S1116T1116TacTacC610AY.440.000037
S1116T1116TacTacA310AY.440.000018
S1116T1116TacTacG110AY.440.000006
S1116T1116TacTacC1010B.1.258.181
S1116T1116IaCtaTt99AY.1110.001648
S1116T1116IaCtaTt99B.1.5260.000212
S1116T1116NaCtaAt88AY.30.00008
S1116T1116TacTacC88B.1.3750.006557
S1116T1116TacTacC77A0.002709
S1116T1116NaCtaAt77AY.430.000031
S1116T1116TacTacC67B.1.20.000053
S1116T1116TacTacG17B.1.20.000009
S1116T1116TacTacC77B.1.2220.011844
S1116T1116TacTacC67B.1.617.20.000023
S1116T1116TacTacA17B.1.617.20.000004
S1116T1116TacTacC77B.4.10.132075
S1116T1116NaCtaAt66AY.1030.000037
S1116T1116NaCtaAt66AY.1210.000812
S1116T1116AActGct66AY.99.20.000553
S1116T1116TacTacC66B.1.177.860.001101
S1116T1116NaCtaAt66B.1.20.000053
S1116T1116TacTacC55AY.250.00003
S1116T1116NaCtaAt55AY.9.20.000184
S1116T1116IaCtaTt55B.10.000046
S1116T1116TacTacC55B.1.177.730.002831
S1116T1116TacTacC55B.1.4110.018519
S1116T1116TacTacC55B.1.6000.02924
S1116T1116IaCtaTt55B.1.617.20.000019
S1116T1116IaCtaTt340.166667
S1116T1116IaCTaTC140.055556
S1116T1116SaCtaGt44AY.40.000006
S1116T1116IaCtaTt44AY.440.000024
S1116T1116TacTacC44B.1.1.2160.003562
S1116T1116TacTacC44B.1.1.390.002039
S1116T1116delACT---44B.1.1.70.000004
S1116T1116TacTacC44B.1.1260.005102
S1116T1116TacTacC44B.1.177.210.000306
S1116T1116TacTacC44B.1.177.60.003906
S1116T1116AAcTGcC44B.1.258.170.000416
S1116T1116AActGct44B.1.617.20.000015
S1116T1116TacTacC230.111111
S1116T1116TacTacG130.055556
S1116T1116PAcTCcC33All0.000001
S1116T1116del1aCta-t23All0
S1116T1116del1Act-ct13All0
S1116T1116IaCtaTt33AY.1030.000019
S1116T1116AActGct33AY.1030.000019
S1116T1116delACT---33AY.1200.000112
S1116T1116NaCtaAt33AY.260.000085
S1116T1116TacTacC33AY.30.00003
S1116T1116IaCtaTt33AY.390.000074
S1116T1116IaCtaTt33AY.39.10.000119
S1116T1116delACT---33AY.40.000005
S1116T1116SaCtaGt33AY.4.2.10.000447
S1116T1116IaCtaTt33AY.430.000013
S1116T1116SaCtaGt33AY.440.000018
S1116T1116TacTacC33AY.470.000093
S1116T1116TacTacA33B.1.1.3170.001235
S1116T1116NaCtaAt33B.1.1.3180.000905
S1116T1116TacTacC33B.1.258.150.056604
S1116T1116NaCtaAt33B.1.3290.001823
S1116T1116TacTacC33B.1.3510.000089
S1116T1116TacTacC33B.1.3670.002377
S1116T1116TacTacC33B.1.438.10.000322
S1116T1116NaCtaAt33B.1.6230.001609
S1116T1116IaCtaTt33D.20.000225
S1116T1116NaCtaAt33P.10.000047
S1116T1116TacTacC33P.1.20.003468
S1116T1116CACtTGt220.111111
S1116T1116PAcTCcC220.111111
S1116T1116DACTGAC120.055556
S1116T1116AActGct120.055556
S1116T1116AAcTGcC120.055556
S1116T1116NaCtaAt120.055556
S1116T1116VACtGTt120.055556
S1116T1116VACTGTC120.055556
S1116T1116DACtGAt120.055556
S1116T1116NaCTaAC120.055556
S1116T1116CACtTGt22All0
S1116T1116VACtGTt12All0
S1116T1116VACTGTC12All0
S1116T1116DACtGAt12All0
S1116T1116DACTGAC12All0
S1116T1116AActGct22AY.1020.000053
S1116T1116IaCtaTt22AY.1020.000053
S1116T1116IaCtaTt22AY.1130.000285
S1116T1116TacTacC22AY.200.000078
S1116T1116AActGct22AY.30.00002
S1116T1116IaCtaTt22AY.30.00002
S1116T1116NaCtaAt22AY.380.000999
S1116T1116NaCtaAt22AY.4.20.000043
S1116T1116TacTacC22AY.4.2.10.000298
S1116T1116delACT---22AY.4.50.000215
S1116T1116TacTacC22AY.420.00008
S1116T1116NaCtaAt22AY.46.20.001271
S1116T1116IaCtaTt22AY.50.000041
S1116T1116TacTacC22AY.50.000041
S1116T1116NaCtaAt22AY.670.000929
S1116T1116TacTacC22B.1.1.1530.002191
S1116T1116TacTacC22B.1.1.3480.001592
S1116T1116TacTacC22B.1.1.5190.000079
S1116T1116IaCtaTt22B.1.1.5190.000079
S1116T1116TacTacC22B.1.1.700.000682
S1116T1116TacTacC22B.1.1700.008621
S1116T1116TacTacC22B.1.177.440.001038
S1116T1116AActGct22B.1.20.000018
S1116T1116NaCtaAt22B.1.2140.007326
S1116T1116IaCTaTC22B.1.2580.000133
S1116T1116IaCtaTt22B.1.3490.00143
S1116T1116TacTacC22B.1.5900.009091
S1116T1116TacTacC22B.1.5950.000522
S1116T1116del1aCta-t22B.1.6270.00404
S1116T1116TacTacC22P.10.000032
S1116T1116AActGct22P.1.20.002312
S1116T1116TacTacC22P.1.60.003891
S1116T1116SaCtaGt22P.70.008734
S1116T1116TacTacC11A.2.50.000499
S1116T1116GACTGGC11All0
S1116T1116del2ACt--t11All0
S1116T1116TacTacC11AT.10.005128
S1116T1116IaCtaTt11AW.10.003049
S1116T1116IaCtaTt11AY.1000.000046
S1116T1116TacTacC11AY.1080.001103
S1116T1116SaCtaGt11AY.1140.000231
S1116T1116TacTacC11AY.1170.000085
S1116T1116IaCtaTt11AY.1170.000085
S1116T1116delACT---11AY.1180.000063
S1116T1116AActGct11AY.1190.000035
S1116T1116NaCtaAt11AY.1190.000035
S1116T1116NaCtaAt11AY.230.00007
S1116T1116IaCtaTt11AY.250.000006
S1116T1116AActGct11AY.250.000006
S1116T1116SaCtaGt11AY.260.000028
S1116T1116TacTacC11AY.290.000016
S1116T1116IaCtaTt11AY.290.000016
S1116T1116NaCtaAt11AY.290.000016
S1116T1116TacTacC11AY.3.10.000085
S1116T1116TacTacC11AY.330.000067
S1116T1116AActGct11AY.330.000067
S1116T1116IaCtaTt11AY.340.000097
S1116T1116delACT---11AY.360.000148
S1116T1116IaCtaTt11AY.360.000148
S1116T1116TacTacC11AY.360.000148
S1116T1116NaCtaAt11AY.390.000025
S1116T1116del2ACt--t11AY.40.000002
S1116T1116AActGct11AY.40.000002
S1116T1116TacTacC11AY.4.20.000022
S1116T1116IaCtaTt11AY.4.50.000107
S1116T1116IaCtaTt11AY.420.00004
S1116T1116AActGct11AY.430.000004
S1116T1116delACT---11AY.430.000004
S1116T1116delACT---11AY.440.000006
S1116T1116TacTacC11AY.46.20.000635
S1116T1116delACT---11AY.46.20.000635
S1116T1116NaCtaAt11AY.50.000021
S1116T1116TacTacC11AY.540.000095
S1116T1116IaCtaTt11AY.60.000041
S1116T1116SaCtaGt11AY.610.000105
S1116T1116TacTacC11AY.610.000105
S1116T1116IaCtaTt11AY.630.000387
S1116T1116GACTGGC11AY.670.000464
S1116T1116IaCtaTt11AY.7.10.000113
S1116T1116TacTacC11AY.7.20.000559
S1116T1116NaCtaAt11AY.740.000116
S1116T1116IaCtaTt11AY.740.000116
S1116T1116IaCtaTt11AY.750.000056
S1116T1116IaCtaTt11AY.75.10.00018
S1116T1116SaCtaGt11AY.75.10.00018
S1116T1116TacTacC11AY.75.10.00018
S1116T1116SaCtaGt11AY.90.000068
S1116T1116SaCtaGt11AY.9.10.000084
S1116T1116SaCtaGt11AY.98.10.000048
S1116T1116SaCtaGt11B.10.000009
S1116T1116del1Act-ct11B.10.000009
S1116T1116IaCtaTt11B.1.10.000018
S1116T1116PAcTCcC11B.1.10.000018
S1116T1116NaCtaAt11B.1.1.1090.04
S1116T1116TacTacC11B.1.1.1700.001247
S1116T1116AActGct11B.1.1.1890.001513
S1116T1116SaCtaGt11B.1.1.2140.000055
S1116T1116TacTacC11B.1.1.2650.003155
S1116T1116TacTacC11B.1.1.2770.000759
S1116T1116IaCtaTt11B.1.1.2880.001916
S1116T1116TacTacC11B.1.1.2880.001916
S1116T1116IaCtaTt11B.1.1.3110.000358
S1116T1116TacTacC11B.1.1.3180.000302
S1116T1116TacTacC11B.1.1.370.000193
S1116T1116TacTacC11B.1.1.3720.000689
S1116T1116TacTacC11B.1.1.3770.001381
S1116T1116TacTacC11B.1.1.3980.003226
S1116T1116TacTacC11B.1.1.4090.002833
S1116T1116NaCtaAt11B.1.1.4090.002833
S1116T1116NaCtaAt11B.1.1.460.004367
S1116T1116TacTacC11B.1.1.470.005348
S1116T1116TacTacC11B.1.1.500.000679
S1116T1116SaCtaGt11B.1.1.5190.00004
S1116T1116NaCtaAt11B.1.1.5190.00004
S1116T1116SaCtaGt11B.1.1.630.000386
S1116T1116AActGct11B.1.1.70.000001
S1116T1116NaCtaAt11B.1.1190.010526
S1116T1116TacTacC11B.1.1570.002985
S1116T1116AActGct11B.1.160.330.004425
S1116T1116TacTacC11B.1.177.100.000878
S1116T1116IaCtaTt11B.1.177.100.000878
S1116T1116TacTacC11B.1.177.120.000152
S1116T1116AActGct11B.1.177.230.003236
S1116T1116IaCtaTt11B.1.177.600.000218
S1116T1116TacTacC11B.1.177.70.000165
S1116T1116TacTacC11B.1.177.750.001041
S1116T1116TacTacC11B.1.177.810.000189
S1116T1116NaCtaAt11B.1.1920.009259
S1116T1116delACT---11B.1.20.000009
S1116T1116IaCtaTt11B.1.2210.000071
S1116T1116NaCtaAt11B.1.2250.015385
S1116T1116TacTacC11B.1.2420.018868
S1116T1116AAcTGcC11B.1.2580.000067
S1116T1116TacTacC11B.1.258.160.001637
S1116T1116TacTacC11B.1.258.30.001675
S1116T1116TacTacC11B.1.2930.0125
S1116T1116IaCtaTt11B.1.3380.008621
S1116T1116IaCtaTt11B.1.3460.001311
S1116T1116IaCtaTt11B.1.3510.00003
S1116T1116AActGct11B.1.3510.00003
S1116T1116NaCtaAt11B.1.3510.00003
S1116T1116IaCtaTt11B.1.36.180.00042
S1116T1116TacTacC11B.1.3620.001541
S1116T1116TacTacC11B.1.4060.006061
S1116T1116IaCtaTt11B.1.4240.008065
S1116T1116TacTacC11B.1.4250.002994
S1116T1116NaCtaAt11B.1.4290.000024
S1116T1116TacTacC11B.1.4290.000024
S1116T1116TacTacC11B.1.4320.011236
S1116T1116NaCtaAt11B.1.4620.007246
S1116T1116TacTacC11B.1.4730.019231
S1116T1116NaCtaAt11B.1.5170.000427
S1116T1116TacTacC11B.1.5260.000024
S1116T1116TacTacC11B.1.5760.000907
S1116T1116IaCtaTt11B.1.5820.000491
S1116T1116NaCtaAt11B.1.5950.000261
S1116T1116TacTacC11B.1.5960.000087
S1116T1116TacTacC11B.1.5990.00365
S1116T1116delACT---11B.1.6300.005236
S1116T1116TacTacC11B.1.6300.005236
S1116T1116IaCtaTt11B.1.6370.000073
S1116T1116NaCtaAt11B.1.6370.000073
S1116T1116NaCtaAt11B.400.000364
S1116T1116NaCtaAt11B.450.003831
S1116T1116TacTacC11C.350.000774
S1116T1116IaCtaTt11C.36.30.000567
S1116T1116delACT---11C.370.000116
S1116T1116AActGct11P.10.000016
S1116T1116delACT---11P.10.000016
S1116T1116IaCtaTt11P.10.000016
S1116T1116TacTacA11P.1.140.000048
S1116T1116delACT---11P.1.150.000232
S1116T1116SaCtaGt11Q.10.000126
S1116T1116TacTacC11Q.80.000165
S1116T1116NaCtaAt11Q.80.000165
S1116T1116TacTacC11Z.10.00289