CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1116 | T1116T | syn | acT | acC | 26291 | 26244 | 0.998212 | 24908-24910 | |
S | 1116 | T1116T | syn | acT | acA | 26291 | 44 | 0.00167358 | 24908-24910 | |
S | 1116 | T1116T | syn | acT | acG | 26291 | 3 | 0.000114107 | 24908-24910 | |
S | 1116 | T1116N | nonsyn | aCt | aAt | 550 | 549 | 0.998182 | 24908-24910 | |
S | 1116 | T1116N | nonsyn | aCT | aAC | 550 | 1 | 0.00181818 | 24908-24910 | |
S | 1116 | T1116I | nonsyn | aCt | aTt | 144 | 141 | 0.979167 | 24908-24910 | |
S | 1116 | T1116I | nonsyn | aCT | aTC | 144 | 3 | 0.0208333 | 24908-24910 | |
S | 1116 | T1116S | nonsyn | aCt | aGt | 66 | 66 | 1 | 24908-24910 | |
S | 1116 | T1116A | nonsyn | Act | Gct | 39 | 33 | 0.846154 | 24908-24910 | |
S | 1116 | T1116A | nonsyn | AcT | GcC | 39 | 6 | 0.153846 | 24908-24910 | |
S | 1116 | T1116del | del | ACT | --- | 22 | 22 | 1 | 24908-24910 | |
S | 1116 | T1116P | nonsyn | AcT | CcC | 3 | 3 | 1 | 24908-24910 | |
S | 1116 | T1116del1 | del | aCt | a-t | 3 | 2 | 0.666667 | 24908-24910 | |
S | 1116 | T1116del1 | del | Act | -ct | 3 | 1 | 0.333333 | 24908-24910 | |
S | 1116 | T1116C | nonsyn | ACt | TGt | 2 | 2 | 1 | 24908-24910 | |
S | 1116 | T1116V | nonsyn | ACT | GTC | 2 | 1 | 0.5 | 24908-24910 | |
S | 1116 | T1116D | nonsyn | ACt | GAt | 2 | 1 | 0.5 | 24908-24910 | |
S | 1116 | T1116D | nonsyn | ACT | GAC | 2 | 1 | 0.5 | 24908-24910 | |
S | 1116 | T1116V | nonsyn | ACt | GTt | 2 | 1 | 0.5 | 24908-24910 | |
S | 1116 | T1116G | nonsyn | ACT | GGC | 1 | 1 | 1 | 24908-24910 | |
S | 1116 | T1116del2 | del | ACt | --t | 1 | 1 | 1 | 24908-24910 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1116 | T1116T | acT | acC | 26244 | 26291 | All | 0.005019 |
S | 1116 | T1116T | acT | acA | 44 | 26291 | All | 0.000008 |
S | 1116 | T1116T | acT | acG | 3 | 26291 | All | 0.000001 |
S | 1116 | T1116T | acT | acC | 10402 | 10402 | B.1.258 | 0.692221 |
S | 1116 | T1116T | acT | acC | 9594 | 9594 | B.1.258.17 | 0.997505 |
S | 1116 | T1116T | acT | acC | 2467 | 2467 | B.1.258.11 | 0.977804 |
S | 1116 | T1116T | acT | acC | 740 | 746 | B.1.1.7 | 0.000662 |
S | 1116 | T1116T | acT | acA | 6 | 746 | B.1.1.7 | 0.000005 |
S | 1116 | T1116N | aCt | aAt | 549 | 550 | All | 0.000105 |
S | 1116 | T1116N | aCT | aAC | 1 | 550 | All | 0 |
S | 1116 | T1116T | acT | acC | 522 | 522 | B.1.258.7 | 0.998088 |
S | 1116 | T1116T | acT | acC | 368 | 368 | B.1.258.22 | 0.981333 |
S | 1116 | T1116T | acT | acC | 322 | 322 | B.1 | 0.002949 |
S | 1116 | T1116T | acT | acC | 289 | 289 | B.1.258.4 | 0.996552 |
S | 1116 | T1116T | acT | acC | 200 | 200 | B.1.258.9 | 1 |
S | 1116 | T1116N | aCt | aAt | 167 | 167 | B.1.605 | 0.994048 |
S | 1116 | T1116I | aCt | aTt | 141 | 144 | All | 0.000027 |
S | 1116 | T1116I | aCT | aTC | 3 | 144 | All | 0.000001 |
S | 1116 | T1116T | acT | acC | 141 | 141 | B.1.258.19 | 1 |
S | 1116 | T1116T | acT | acC | 127 | 127 | B.1.258.21 | 0.984496 |
S | 1116 | T1116T | acT | acC | 125 | 125 | B.1.258.12 | 0.984252 |
S | 1116 | T1116T | acT | acC | 114 | 114 | B.1.258.5 | 1 |
S | 1116 | T1116N | aCt | aAt | 106 | 106 | B.1.1.7 | 0.000095 |
S | 1116 | T1116T | acT | acC | 87 | 87 | B.1.258.10 | 0.988636 |
S | 1116 | T1116N | aCt | aAt | 80 | 80 | AY.4 | 0.000125 |
S | 1116 | T1116T | acT | acC | 54 | 73 | B.1.177 | 0.000711 |
S | 1116 | T1116T | acT | acA | 19 | 73 | B.1.177 | 0.00025 |
S | 1116 | T1116S | aCt | aGt | 66 | 66 | All | 0.000013 |
S | 1116 | T1116T | acT | acC | 63 | 63 | B.1.258.20 | 1 |
S | 1116 | T1116T | acT | acC | 51 | 51 | B.1.258.6 | 1 |
S | 1116 | T1116T | acT | acC | 50 | 50 | B.1.160 | 0.001559 |
S | 1116 | T1116T | acT | acC | 42 | 42 | B.1.258.23 | 1 |
S | 1116 | T1116A | Act | Gct | 33 | 39 | All | 0.000006 |
S | 1116 | T1116A | AcT | GcC | 6 | 39 | All | 0.000001 |
S | 1116 | T1116T | acT | acC | 39 | 39 | B.1.1 | 0.000707 |
S | 1116 | T1116T | acT | acC | 35 | 35 | Q.1 | 0.004421 |
S | 1116 | T1116I | aCt | aTt | 34 | 34 | AY.4 | 0.000053 |
S | 1116 | T1116T | acT | acC | 32 | 32 | B.1.609 | 0.01534 |
S | 1116 | T1116T | acT | acC | 31 | 31 | B.1.258.24 | 0.333333 |
S | 1116 | T1116N | aCt | aAt | 30 | 30 | AY.20 | 0.001166 |
S | 1116 | T1116N | aCt | aAt | 29 | 29 | AY.44 | 0.000177 |
S | 1116 | T1116T | acT | acC | 27 | 28 | AY.75 | 0.001513 |
S | 1116 | T1116T | acT | acA | 1 | 28 | AY.75 | 0.000056 |
S | 1116 | T1116T | acT | acC | 25 | 25 | B.1.234 | 0.003299 |
S | 1116 | T1116S | aCt | aGt | 24 | 24 | B.1.1.7 | 0.000021 |
S | 1116 | T1116T | acT | acC | 15 | 23 | AY.103 | 0.000093 |
S | 1116 | T1116T | acT | acA | 8 | 23 | AY.103 | 0.00005 |
S | 1116 | T1116del | ACT | --- | 22 | 22 | All | 0.000004 |
S | 1116 | T1116T | acT | acC | 18 | 18 | B | 0.002301 |
S | 1116 | T1116S | aCt | aGt | 18 | 18 | B.1.177.86 | 0.003302 |
S | 1116 | T1116N | aCt | aAt | 16 | 16 | B.1.617.2 | 0.00006 |
S | 1116 | T1116T | acT | acC | 15 | 15 | AY.43 | 0.000066 |
S | 1116 | T1116I | aCt | aTt | 15 | 15 | B.1.1.7 | 0.000013 |
S | 1116 | T1116N | aCt | aAt | 13 | 13 | AY.113 | 0.001851 |
S | 1116 | T1116T | acT | acC | 13 | 13 | B.1.1.222 | 0.002652 |
S | 1116 | T1116T | acT | acC | 13 | 13 | B.1.258.14 | 0.012745 |
S | 1116 | T1116N | aCt | aAt | 11 | 11 | AY.47 | 0.000342 |
S | 1116 | T1116N | aCt | aAt | 11 | 11 | B.1 | 0.000101 |
S | 1116 | T1116T | acT | acC | 10 | 11 | B.1.221 | 0.00071 |
S | 1116 | T1116T | acT | acA | 1 | 11 | B.1.221 | 0.000071 |
S | 1116 | T1116T | acT | acC | 9 | 10 | AY.4 | 0.000014 |
S | 1116 | T1116T | acT | acA | 1 | 10 | AY.4 | 0.000002 |
S | 1116 | T1116T | acT | acC | 6 | 10 | AY.44 | 0.000037 |
S | 1116 | T1116T | acT | acA | 3 | 10 | AY.44 | 0.000018 |
S | 1116 | T1116T | acT | acG | 1 | 10 | AY.44 | 0.000006 |
S | 1116 | T1116T | acT | acC | 10 | 10 | B.1.258.18 | 1 |
S | 1116 | T1116I | aCt | aTt | 9 | 9 | AY.111 | 0.001648 |
S | 1116 | T1116I | aCt | aTt | 9 | 9 | B.1.526 | 0.000212 |
S | 1116 | T1116N | aCt | aAt | 8 | 8 | AY.3 | 0.00008 |
S | 1116 | T1116T | acT | acC | 8 | 8 | B.1.375 | 0.006557 |
S | 1116 | T1116T | acT | acC | 7 | 7 | A | 0.002709 |
S | 1116 | T1116N | aCt | aAt | 7 | 7 | AY.43 | 0.000031 |
S | 1116 | T1116T | acT | acC | 6 | 7 | B.1.2 | 0.000053 |
S | 1116 | T1116T | acT | acG | 1 | 7 | B.1.2 | 0.000009 |
S | 1116 | T1116T | acT | acC | 7 | 7 | B.1.222 | 0.011844 |
S | 1116 | T1116T | acT | acC | 6 | 7 | B.1.617.2 | 0.000023 |
S | 1116 | T1116T | acT | acA | 1 | 7 | B.1.617.2 | 0.000004 |
S | 1116 | T1116T | acT | acC | 7 | 7 | B.4.1 | 0.132075 |
S | 1116 | T1116N | aCt | aAt | 6 | 6 | AY.103 | 0.000037 |
S | 1116 | T1116N | aCt | aAt | 6 | 6 | AY.121 | 0.000812 |
S | 1116 | T1116A | Act | Gct | 6 | 6 | AY.99.2 | 0.000553 |
S | 1116 | T1116T | acT | acC | 6 | 6 | B.1.177.86 | 0.001101 |
S | 1116 | T1116N | aCt | aAt | 6 | 6 | B.1.2 | 0.000053 |
S | 1116 | T1116T | acT | acC | 5 | 5 | AY.25 | 0.00003 |
S | 1116 | T1116N | aCt | aAt | 5 | 5 | AY.9.2 | 0.000184 |
S | 1116 | T1116I | aCt | aTt | 5 | 5 | B.1 | 0.000046 |
S | 1116 | T1116T | acT | acC | 5 | 5 | B.1.177.73 | 0.002831 |
S | 1116 | T1116T | acT | acC | 5 | 5 | B.1.411 | 0.018519 |
S | 1116 | T1116T | acT | acC | 5 | 5 | B.1.600 | 0.02924 |
S | 1116 | T1116I | aCt | aTt | 5 | 5 | B.1.617.2 | 0.000019 |
S | 1116 | T1116I | aCt | aTt | 3 | 4 | 0.166667 | |
S | 1116 | T1116I | aCT | aTC | 1 | 4 | 0.055556 | |
S | 1116 | T1116S | aCt | aGt | 4 | 4 | AY.4 | 0.000006 |
S | 1116 | T1116I | aCt | aTt | 4 | 4 | AY.44 | 0.000024 |
S | 1116 | T1116T | acT | acC | 4 | 4 | B.1.1.216 | 0.003562 |
S | 1116 | T1116T | acT | acC | 4 | 4 | B.1.1.39 | 0.002039 |
S | 1116 | T1116del | ACT | --- | 4 | 4 | B.1.1.7 | 0.000004 |
S | 1116 | T1116T | acT | acC | 4 | 4 | B.1.126 | 0.005102 |
S | 1116 | T1116T | acT | acC | 4 | 4 | B.1.177.21 | 0.000306 |
S | 1116 | T1116T | acT | acC | 4 | 4 | B.1.177.6 | 0.003906 |
S | 1116 | T1116A | AcT | GcC | 4 | 4 | B.1.258.17 | 0.000416 |
S | 1116 | T1116A | Act | Gct | 4 | 4 | B.1.617.2 | 0.000015 |
S | 1116 | T1116T | acT | acC | 2 | 3 | 0.111111 | |
S | 1116 | T1116T | acT | acG | 1 | 3 | 0.055556 | |
S | 1116 | T1116P | AcT | CcC | 3 | 3 | All | 0.000001 |
S | 1116 | T1116del1 | aCt | a-t | 2 | 3 | All | 0 |
S | 1116 | T1116del1 | Act | -ct | 1 | 3 | All | 0 |
S | 1116 | T1116I | aCt | aTt | 3 | 3 | AY.103 | 0.000019 |
S | 1116 | T1116A | Act | Gct | 3 | 3 | AY.103 | 0.000019 |
S | 1116 | T1116del | ACT | --- | 3 | 3 | AY.120 | 0.000112 |
S | 1116 | T1116N | aCt | aAt | 3 | 3 | AY.26 | 0.000085 |
S | 1116 | T1116T | acT | acC | 3 | 3 | AY.3 | 0.00003 |
S | 1116 | T1116I | aCt | aTt | 3 | 3 | AY.39 | 0.000074 |
S | 1116 | T1116I | aCt | aTt | 3 | 3 | AY.39.1 | 0.000119 |
S | 1116 | T1116del | ACT | --- | 3 | 3 | AY.4 | 0.000005 |
S | 1116 | T1116S | aCt | aGt | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 1116 | T1116I | aCt | aTt | 3 | 3 | AY.43 | 0.000013 |
S | 1116 | T1116S | aCt | aGt | 3 | 3 | AY.44 | 0.000018 |
S | 1116 | T1116T | acT | acC | 3 | 3 | AY.47 | 0.000093 |
S | 1116 | T1116T | acT | acA | 3 | 3 | B.1.1.317 | 0.001235 |
S | 1116 | T1116N | aCt | aAt | 3 | 3 | B.1.1.318 | 0.000905 |
S | 1116 | T1116T | acT | acC | 3 | 3 | B.1.258.15 | 0.056604 |
S | 1116 | T1116N | aCt | aAt | 3 | 3 | B.1.329 | 0.001823 |
S | 1116 | T1116T | acT | acC | 3 | 3 | B.1.351 | 0.000089 |
S | 1116 | T1116T | acT | acC | 3 | 3 | B.1.367 | 0.002377 |
S | 1116 | T1116T | acT | acC | 3 | 3 | B.1.438.1 | 0.000322 |
S | 1116 | T1116N | aCt | aAt | 3 | 3 | B.1.623 | 0.001609 |
S | 1116 | T1116I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
S | 1116 | T1116N | aCt | aAt | 3 | 3 | P.1 | 0.000047 |
S | 1116 | T1116T | acT | acC | 3 | 3 | P.1.2 | 0.003468 |
S | 1116 | T1116C | ACt | TGt | 2 | 2 | 0.111111 | |
S | 1116 | T1116P | AcT | CcC | 2 | 2 | 0.111111 | |
S | 1116 | T1116D | ACT | GAC | 1 | 2 | 0.055556 | |
S | 1116 | T1116A | Act | Gct | 1 | 2 | 0.055556 | |
S | 1116 | T1116A | AcT | GcC | 1 | 2 | 0.055556 | |
S | 1116 | T1116N | aCt | aAt | 1 | 2 | 0.055556 | |
S | 1116 | T1116V | ACt | GTt | 1 | 2 | 0.055556 | |
S | 1116 | T1116V | ACT | GTC | 1 | 2 | 0.055556 | |
S | 1116 | T1116D | ACt | GAt | 1 | 2 | 0.055556 | |
S | 1116 | T1116N | aCT | aAC | 1 | 2 | 0.055556 | |
S | 1116 | T1116C | ACt | TGt | 2 | 2 | All | 0 |
S | 1116 | T1116V | ACt | GTt | 1 | 2 | All | 0 |
S | 1116 | T1116V | ACT | GTC | 1 | 2 | All | 0 |
S | 1116 | T1116D | ACt | GAt | 1 | 2 | All | 0 |
S | 1116 | T1116D | ACT | GAC | 1 | 2 | All | 0 |
S | 1116 | T1116A | Act | Gct | 2 | 2 | AY.102 | 0.000053 |
S | 1116 | T1116I | aCt | aTt | 2 | 2 | AY.102 | 0.000053 |
S | 1116 | T1116I | aCt | aTt | 2 | 2 | AY.113 | 0.000285 |
S | 1116 | T1116T | acT | acC | 2 | 2 | AY.20 | 0.000078 |
S | 1116 | T1116A | Act | Gct | 2 | 2 | AY.3 | 0.00002 |
S | 1116 | T1116I | aCt | aTt | 2 | 2 | AY.3 | 0.00002 |
S | 1116 | T1116N | aCt | aAt | 2 | 2 | AY.38 | 0.000999 |
S | 1116 | T1116N | aCt | aAt | 2 | 2 | AY.4.2 | 0.000043 |
S | 1116 | T1116T | acT | acC | 2 | 2 | AY.4.2.1 | 0.000298 |
S | 1116 | T1116del | ACT | --- | 2 | 2 | AY.4.5 | 0.000215 |
S | 1116 | T1116T | acT | acC | 2 | 2 | AY.42 | 0.00008 |
S | 1116 | T1116N | aCt | aAt | 2 | 2 | AY.46.2 | 0.001271 |
S | 1116 | T1116I | aCt | aTt | 2 | 2 | AY.5 | 0.000041 |
S | 1116 | T1116T | acT | acC | 2 | 2 | AY.5 | 0.000041 |
S | 1116 | T1116N | aCt | aAt | 2 | 2 | AY.67 | 0.000929 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.1.153 | 0.002191 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.1.348 | 0.001592 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.1.519 | 0.000079 |
S | 1116 | T1116I | aCt | aTt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.1.70 | 0.000682 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.170 | 0.008621 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.177.44 | 0.001038 |
S | 1116 | T1116A | Act | Gct | 2 | 2 | B.1.2 | 0.000018 |
S | 1116 | T1116N | aCt | aAt | 2 | 2 | B.1.214 | 0.007326 |
S | 1116 | T1116I | aCT | aTC | 2 | 2 | B.1.258 | 0.000133 |
S | 1116 | T1116I | aCt | aTt | 2 | 2 | B.1.349 | 0.00143 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.590 | 0.009091 |
S | 1116 | T1116T | acT | acC | 2 | 2 | B.1.595 | 0.000522 |
S | 1116 | T1116del1 | aCt | a-t | 2 | 2 | B.1.627 | 0.00404 |
S | 1116 | T1116T | acT | acC | 2 | 2 | P.1 | 0.000032 |
S | 1116 | T1116A | Act | Gct | 2 | 2 | P.1.2 | 0.002312 |
S | 1116 | T1116T | acT | acC | 2 | 2 | P.1.6 | 0.003891 |
S | 1116 | T1116S | aCt | aGt | 2 | 2 | P.7 | 0.008734 |
S | 1116 | T1116T | acT | acC | 1 | 1 | A.2.5 | 0.000499 |
S | 1116 | T1116G | ACT | GGC | 1 | 1 | All | 0 |
S | 1116 | T1116del2 | ACt | --t | 1 | 1 | All | 0 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AT.1 | 0.005128 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AW.1 | 0.003049 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.100 | 0.000046 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.108 | 0.001103 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | AY.114 | 0.000231 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.117 | 0.000085 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.117 | 0.000085 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | AY.119 | 0.000035 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | AY.119 | 0.000035 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | AY.23 | 0.00007 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.25 | 0.000006 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | AY.26 | 0.000028 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.29 | 0.000016 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.29 | 0.000016 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | AY.29 | 0.000016 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.3.1 | 0.000085 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.33 | 0.000067 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | AY.33 | 0.000067 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | AY.36 | 0.000148 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.36 | 0.000148 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.36 | 0.000148 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | AY.39 | 0.000025 |
S | 1116 | T1116del2 | ACt | --t | 1 | 1 | AY.4 | 0.000002 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.42 | 0.00004 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.46.2 | 0.000635 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | AY.5 | 0.000021 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.54 | 0.000095 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.6 | 0.000041 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | AY.61 | 0.000105 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.61 | 0.000105 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.63 | 0.000387 |
S | 1116 | T1116G | ACT | GGC | 1 | 1 | AY.67 | 0.000464 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.7.2 | 0.000559 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | AY.74 | 0.000116 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.74 | 0.000116 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.75 | 0.000056 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | AY.75.1 | 0.00018 |
S | 1116 | T1116T | acT | acC | 1 | 1 | AY.75.1 | 0.00018 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | AY.9 | 0.000068 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | AY.9.1 | 0.000084 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | AY.98.1 | 0.000048 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | B.1 | 0.000009 |
S | 1116 | T1116del1 | Act | -ct | 1 | 1 | B.1 | 0.000009 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.1 | 0.000018 |
S | 1116 | T1116P | AcT | CcC | 1 | 1 | B.1.1 | 0.000018 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.1.109 | 0.04 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.170 | 0.001247 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | B.1.1.189 | 0.001513 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.265 | 0.003155 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.277 | 0.000759 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.1.288 | 0.001916 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.288 | 0.001916 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.1.311 | 0.000358 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.318 | 0.000302 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.372 | 0.000689 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.377 | 0.001381 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.398 | 0.003226 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.409 | 0.002833 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.1.46 | 0.004367 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.47 | 0.005348 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.1.50 | 0.000679 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | B.1.1.63 | 0.000386 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.119 | 0.010526 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.157 | 0.002985 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | B.1.160.33 | 0.004425 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.177.10 | 0.000878 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.177.10 | 0.000878 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.177.12 | 0.000152 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | B.1.177.23 | 0.003236 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.177.75 | 0.001041 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.177.81 | 0.000189 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.192 | 0.009259 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.221 | 0.000071 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.225 | 0.015385 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.242 | 0.018868 |
S | 1116 | T1116A | AcT | GcC | 1 | 1 | B.1.258 | 0.000067 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.258.16 | 0.001637 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.258.3 | 0.001675 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.293 | 0.0125 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.338 | 0.008621 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.346 | 0.001311 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.351 | 0.00003 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | B.1.351 | 0.00003 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.351 | 0.00003 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.362 | 0.001541 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.406 | 0.006061 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.424 | 0.008065 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.425 | 0.002994 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.429 | 0.000024 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.429 | 0.000024 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.432 | 0.011236 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.462 | 0.007246 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.473 | 0.019231 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.517 | 0.000427 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.526 | 0.000024 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.576 | 0.000907 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.582 | 0.000491 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.595 | 0.000261 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.596 | 0.000087 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.599 | 0.00365 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 1116 | T1116T | acT | acC | 1 | 1 | B.1.630 | 0.005236 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | B.1.637 | 0.000073 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.1.637 | 0.000073 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.40 | 0.000364 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | B.45 | 0.003831 |
S | 1116 | T1116T | acT | acC | 1 | 1 | C.35 | 0.000774 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | C.36.3 | 0.000567 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | C.37 | 0.000116 |
S | 1116 | T1116A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
S | 1116 | T1116I | aCt | aTt | 1 | 1 | P.1 | 0.000016 |
S | 1116 | T1116T | acT | acA | 1 | 1 | P.1.14 | 0.000048 |
S | 1116 | T1116del | ACT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1116 | T1116S | aCt | aGt | 1 | 1 | Q.1 | 0.000126 |
S | 1116 | T1116T | acT | acC | 1 | 1 | Q.8 | 0.000165 |
S | 1116 | T1116N | aCt | aAt | 1 | 1 | Q.8 | 0.000165 |
S | 1116 | T1116T | acT | acC | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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