CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1116

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	1116	T1116T		syn	acT	acC	26291	26244	0.998212	24908-24910
S	1116	T1116T		syn	acT	acA	26291	44	0.00167358	24908-24910
S	1116	T1116T		syn	acT	acG	26291	3	0.000114107	24908-24910
S	1116	T1116N		nonsyn	aCt	aAt	550	549	0.998182	24908-24910
S	1116	T1116N		nonsyn	aCT	aAC	550	1	0.00181818	24908-24910
S	1116	T1116I		nonsyn	aCt	aTt	144	141	0.979167	24908-24910
S	1116	T1116I		nonsyn	aCT	aTC	144	3	0.0208333	24908-24910
S	1116	T1116S		nonsyn	aCt	aGt	66	66	1	24908-24910
S	1116	T1116A		nonsyn	Act	Gct	39	33	0.846154	24908-24910
S	1116	T1116A		nonsyn	AcT	GcC	39	6	0.153846	24908-24910
S	1116	T1116del		del	ACT	---	22	22	1	24908-24910
S	1116	T1116P		nonsyn	AcT	CcC	3	3	1	24908-24910
S	1116	T1116del1		del	aCt	a-t	3	2	0.666667	24908-24910
S	1116	T1116del1		del	Act	-ct	3	1	0.333333	24908-24910
S	1116	T1116C		nonsyn	ACt	TGt	2	2	1	24908-24910
S	1116	T1116V		nonsyn	ACT	GTC	2	1	0.5	24908-24910
S	1116	T1116D		nonsyn	ACt	GAt	2	1	0.5	24908-24910
S	1116	T1116D		nonsyn	ACT	GAC	2	1	0.5	24908-24910
S	1116	T1116V		nonsyn	ACt	GTt	2	1	0.5	24908-24910
S	1116	T1116G		nonsyn	ACT	GGC	1	1	1	24908-24910
S	1116	T1116del2		del	ACt	--t	1	1	1	24908-24910

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	1116	T1116T	acT	acC	26244	26291	All	0.005019
S	1116	T1116T	acT	acA	44	26291	All	0.000008
S	1116	T1116T	acT	acG	3	26291	All	0.000001
S	1116	T1116T	acT	acC	10402	10402	B.1.258	0.692221
S	1116	T1116T	acT	acC	9594	9594	B.1.258.17	0.997505
S	1116	T1116T	acT	acC	2467	2467	B.1.258.11	0.977804
S	1116	T1116T	acT	acC	740	746	B.1.1.7	0.000662
S	1116	T1116T	acT	acA	6	746	B.1.1.7	0.000005
S	1116	T1116N	aCt	aAt	549	550	All	0.000105
S	1116	T1116N	aCT	aAC	1	550	All	0
S	1116	T1116T	acT	acC	522	522	B.1.258.7	0.998088
S	1116	T1116T	acT	acC	368	368	B.1.258.22	0.981333
S	1116	T1116T	acT	acC	322	322	B.1	0.002949
S	1116	T1116T	acT	acC	289	289	B.1.258.4	0.996552
S	1116	T1116T	acT	acC	200	200	B.1.258.9	1
S	1116	T1116N	aCt	aAt	167	167	B.1.605	0.994048
S	1116	T1116I	aCt	aTt	141	144	All	0.000027
S	1116	T1116I	aCT	aTC	3	144	All	0.000001
S	1116	T1116T	acT	acC	141	141	B.1.258.19	1
S	1116	T1116T	acT	acC	127	127	B.1.258.21	0.984496
S	1116	T1116T	acT	acC	125	125	B.1.258.12	0.984252
S	1116	T1116T	acT	acC	114	114	B.1.258.5	1
S	1116	T1116N	aCt	aAt	106	106	B.1.1.7	0.000095
S	1116	T1116T	acT	acC	87	87	B.1.258.10	0.988636
S	1116	T1116N	aCt	aAt	80	80	AY.4	0.000125
S	1116	T1116T	acT	acC	54	73	B.1.177	0.000711
S	1116	T1116T	acT	acA	19	73	B.1.177	0.00025
S	1116	T1116S	aCt	aGt	66	66	All	0.000013
S	1116	T1116T	acT	acC	63	63	B.1.258.20	1
S	1116	T1116T	acT	acC	51	51	B.1.258.6	1
S	1116	T1116T	acT	acC	50	50	B.1.160	0.001559
S	1116	T1116T	acT	acC	42	42	B.1.258.23	1
S	1116	T1116A	Act	Gct	33	39	All	0.000006
S	1116	T1116A	AcT	GcC	6	39	All	0.000001
S	1116	T1116T	acT	acC	39	39	B.1.1	0.000707
S	1116	T1116T	acT	acC	35	35	Q.1	0.004421
S	1116	T1116I	aCt	aTt	34	34	AY.4	0.000053
S	1116	T1116T	acT	acC	32	32	B.1.609	0.01534
S	1116	T1116T	acT	acC	31	31	B.1.258.24	0.333333
S	1116	T1116N	aCt	aAt	30	30	AY.20	0.001166
S	1116	T1116N	aCt	aAt	29	29	AY.44	0.000177
S	1116	T1116T	acT	acC	27	28	AY.75	0.001513
S	1116	T1116T	acT	acA	1	28	AY.75	0.000056
S	1116	T1116T	acT	acC	25	25	B.1.234	0.003299
S	1116	T1116S	aCt	aGt	24	24	B.1.1.7	0.000021
S	1116	T1116T	acT	acC	15	23	AY.103	0.000093
S	1116	T1116T	acT	acA	8	23	AY.103	0.00005
S	1116	T1116del	ACT	---	22	22	All	0.000004
S	1116	T1116T	acT	acC	18	18	B	0.002301
S	1116	T1116S	aCt	aGt	18	18	B.1.177.86	0.003302
S	1116	T1116N	aCt	aAt	16	16	B.1.617.2	0.00006
S	1116	T1116T	acT	acC	15	15	AY.43	0.000066
S	1116	T1116I	aCt	aTt	15	15	B.1.1.7	0.000013
S	1116	T1116N	aCt	aAt	13	13	AY.113	0.001851
S	1116	T1116T	acT	acC	13	13	B.1.1.222	0.002652
S	1116	T1116T	acT	acC	13	13	B.1.258.14	0.012745
S	1116	T1116N	aCt	aAt	11	11	AY.47	0.000342
S	1116	T1116N	aCt	aAt	11	11	B.1	0.000101
S	1116	T1116T	acT	acC	10	11	B.1.221	0.00071
S	1116	T1116T	acT	acA	1	11	B.1.221	0.000071
S	1116	T1116T	acT	acC	9	10	AY.4	0.000014
S	1116	T1116T	acT	acA	1	10	AY.4	0.000002
S	1116	T1116T	acT	acC	6	10	AY.44	0.000037
S	1116	T1116T	acT	acA	3	10	AY.44	0.000018
S	1116	T1116T	acT	acG	1	10	AY.44	0.000006
S	1116	T1116T	acT	acC	10	10	B.1.258.18	1
S	1116	T1116I	aCt	aTt	9	9	AY.111	0.001648
S	1116	T1116I	aCt	aTt	9	9	B.1.526	0.000212
S	1116	T1116N	aCt	aAt	8	8	AY.3	0.00008
S	1116	T1116T	acT	acC	8	8	B.1.375	0.006557
S	1116	T1116T	acT	acC	7	7	A	0.002709
S	1116	T1116N	aCt	aAt	7	7	AY.43	0.000031
S	1116	T1116T	acT	acC	6	7	B.1.2	0.000053
S	1116	T1116T	acT	acG	1	7	B.1.2	0.000009
S	1116	T1116T	acT	acC	7	7	B.1.222	0.011844
S	1116	T1116T	acT	acC	6	7	B.1.617.2	0.000023
S	1116	T1116T	acT	acA	1	7	B.1.617.2	0.000004
S	1116	T1116T	acT	acC	7	7	B.4.1	0.132075
S	1116	T1116N	aCt	aAt	6	6	AY.103	0.000037
S	1116	T1116N	aCt	aAt	6	6	AY.121	0.000812
S	1116	T1116A	Act	Gct	6	6	AY.99.2	0.000553
S	1116	T1116T	acT	acC	6	6	B.1.177.86	0.001101
S	1116	T1116N	aCt	aAt	6	6	B.1.2	0.000053
S	1116	T1116T	acT	acC	5	5	AY.25	0.00003
S	1116	T1116N	aCt	aAt	5	5	AY.9.2	0.000184
S	1116	T1116I	aCt	aTt	5	5	B.1	0.000046
S	1116	T1116T	acT	acC	5	5	B.1.177.73	0.002831
S	1116	T1116T	acT	acC	5	5	B.1.411	0.018519
S	1116	T1116T	acT	acC	5	5	B.1.600	0.02924
S	1116	T1116I	aCt	aTt	5	5	B.1.617.2	0.000019
S	1116	T1116I	aCt	aTt	3	4		0.166667
S	1116	T1116I	aCT	aTC	1	4		0.055556
S	1116	T1116S	aCt	aGt	4	4	AY.4	0.000006
S	1116	T1116I	aCt	aTt	4	4	AY.44	0.000024
S	1116	T1116T	acT	acC	4	4	B.1.1.216	0.003562
S	1116	T1116T	acT	acC	4	4	B.1.1.39	0.002039
S	1116	T1116del	ACT	---	4	4	B.1.1.7	0.000004
S	1116	T1116T	acT	acC	4	4	B.1.126	0.005102
S	1116	T1116T	acT	acC	4	4	B.1.177.21	0.000306
S	1116	T1116T	acT	acC	4	4	B.1.177.6	0.003906
S	1116	T1116A	AcT	GcC	4	4	B.1.258.17	0.000416
S	1116	T1116A	Act	Gct	4	4	B.1.617.2	0.000015
S	1116	T1116T	acT	acC	2	3		0.111111
S	1116	T1116T	acT	acG	1	3		0.055556
S	1116	T1116P	AcT	CcC	3	3	All	0.000001
S	1116	T1116del1	aCt	a-t	2	3	All	0
S	1116	T1116del1	Act	-ct	1	3	All	0
S	1116	T1116I	aCt	aTt	3	3	AY.103	0.000019
S	1116	T1116A	Act	Gct	3	3	AY.103	0.000019
S	1116	T1116del	ACT	---	3	3	AY.120	0.000112
S	1116	T1116N	aCt	aAt	3	3	AY.26	0.000085
S	1116	T1116T	acT	acC	3	3	AY.3	0.00003
S	1116	T1116I	aCt	aTt	3	3	AY.39	0.000074
S	1116	T1116I	aCt	aTt	3	3	AY.39.1	0.000119
S	1116	T1116del	ACT	---	3	3	AY.4	0.000005
S	1116	T1116S	aCt	aGt	3	3	AY.4.2.1	0.000447
S	1116	T1116I	aCt	aTt	3	3	AY.43	0.000013
S	1116	T1116S	aCt	aGt	3	3	AY.44	0.000018
S	1116	T1116T	acT	acC	3	3	AY.47	0.000093
S	1116	T1116T	acT	acA	3	3	B.1.1.317	0.001235
S	1116	T1116N	aCt	aAt	3	3	B.1.1.318	0.000905
S	1116	T1116T	acT	acC	3	3	B.1.258.15	0.056604
S	1116	T1116N	aCt	aAt	3	3	B.1.329	0.001823
S	1116	T1116T	acT	acC	3	3	B.1.351	0.000089
S	1116	T1116T	acT	acC	3	3	B.1.367	0.002377
S	1116	T1116T	acT	acC	3	3	B.1.438.1	0.000322
S	1116	T1116N	aCt	aAt	3	3	B.1.623	0.001609
S	1116	T1116I	aCt	aTt	3	3	D.2	0.000225
S	1116	T1116N	aCt	aAt	3	3	P.1	0.000047
S	1116	T1116T	acT	acC	3	3	P.1.2	0.003468
S	1116	T1116C	ACt	TGt	2	2		0.111111
S	1116	T1116P	AcT	CcC	2	2		0.111111
S	1116	T1116D	ACT	GAC	1	2		0.055556
S	1116	T1116A	Act	Gct	1	2		0.055556
S	1116	T1116A	AcT	GcC	1	2		0.055556
S	1116	T1116N	aCt	aAt	1	2		0.055556
S	1116	T1116V	ACt	GTt	1	2		0.055556
S	1116	T1116V	ACT	GTC	1	2		0.055556
S	1116	T1116D	ACt	GAt	1	2		0.055556
S	1116	T1116N	aCT	aAC	1	2		0.055556
S	1116	T1116C	ACt	TGt	2	2	All	0
S	1116	T1116V	ACt	GTt	1	2	All	0
S	1116	T1116V	ACT	GTC	1	2	All	0
S	1116	T1116D	ACt	GAt	1	2	All	0
S	1116	T1116D	ACT	GAC	1	2	All	0
S	1116	T1116A	Act	Gct	2	2	AY.102	0.000053
S	1116	T1116I	aCt	aTt	2	2	AY.102	0.000053
S	1116	T1116I	aCt	aTt	2	2	AY.113	0.000285
S	1116	T1116T	acT	acC	2	2	AY.20	0.000078
S	1116	T1116A	Act	Gct	2	2	AY.3	0.00002
S	1116	T1116I	aCt	aTt	2	2	AY.3	0.00002
S	1116	T1116N	aCt	aAt	2	2	AY.38	0.000999
S	1116	T1116N	aCt	aAt	2	2	AY.4.2	0.000043
S	1116	T1116T	acT	acC	2	2	AY.4.2.1	0.000298
S	1116	T1116del	ACT	---	2	2	AY.4.5	0.000215
S	1116	T1116T	acT	acC	2	2	AY.42	0.00008
S	1116	T1116N	aCt	aAt	2	2	AY.46.2	0.001271
S	1116	T1116I	aCt	aTt	2	2	AY.5	0.000041
S	1116	T1116T	acT	acC	2	2	AY.5	0.000041
S	1116	T1116N	aCt	aAt	2	2	AY.67	0.000929
S	1116	T1116T	acT	acC	2	2	B.1.1.153	0.002191
S	1116	T1116T	acT	acC	2	2	B.1.1.348	0.001592
S	1116	T1116T	acT	acC	2	2	B.1.1.519	0.000079
S	1116	T1116I	aCt	aTt	2	2	B.1.1.519	0.000079
S	1116	T1116T	acT	acC	2	2	B.1.1.70	0.000682
S	1116	T1116T	acT	acC	2	2	B.1.170	0.008621
S	1116	T1116T	acT	acC	2	2	B.1.177.44	0.001038
S	1116	T1116A	Act	Gct	2	2	B.1.2	0.000018
S	1116	T1116N	aCt	aAt	2	2	B.1.214	0.007326
S	1116	T1116I	aCT	aTC	2	2	B.1.258	0.000133
S	1116	T1116I	aCt	aTt	2	2	B.1.349	0.00143
S	1116	T1116T	acT	acC	2	2	B.1.590	0.009091
S	1116	T1116T	acT	acC	2	2	B.1.595	0.000522
S	1116	T1116del1	aCt	a-t	2	2	B.1.627	0.00404
S	1116	T1116T	acT	acC	2	2	P.1	0.000032
S	1116	T1116A	Act	Gct	2	2	P.1.2	0.002312
S	1116	T1116T	acT	acC	2	2	P.1.6	0.003891
S	1116	T1116S	aCt	aGt	2	2	P.7	0.008734
S	1116	T1116T	acT	acC	1	1	A.2.5	0.000499
S	1116	T1116G	ACT	GGC	1	1	All	0
S	1116	T1116del2	ACt	--t	1	1	All	0
S	1116	T1116T	acT	acC	1	1	AT.1	0.005128
S	1116	T1116I	aCt	aTt	1	1	AW.1	0.003049
S	1116	T1116I	aCt	aTt	1	1	AY.100	0.000046
S	1116	T1116T	acT	acC	1	1	AY.108	0.001103
S	1116	T1116S	aCt	aGt	1	1	AY.114	0.000231
S	1116	T1116T	acT	acC	1	1	AY.117	0.000085
S	1116	T1116I	aCt	aTt	1	1	AY.117	0.000085
S	1116	T1116del	ACT	---	1	1	AY.118	0.000063
S	1116	T1116A	Act	Gct	1	1	AY.119	0.000035
S	1116	T1116N	aCt	aAt	1	1	AY.119	0.000035
S	1116	T1116N	aCt	aAt	1	1	AY.23	0.00007
S	1116	T1116I	aCt	aTt	1	1	AY.25	0.000006
S	1116	T1116A	Act	Gct	1	1	AY.25	0.000006
S	1116	T1116S	aCt	aGt	1	1	AY.26	0.000028
S	1116	T1116T	acT	acC	1	1	AY.29	0.000016
S	1116	T1116I	aCt	aTt	1	1	AY.29	0.000016
S	1116	T1116N	aCt	aAt	1	1	AY.29	0.000016
S	1116	T1116T	acT	acC	1	1	AY.3.1	0.000085
S	1116	T1116T	acT	acC	1	1	AY.33	0.000067
S	1116	T1116A	Act	Gct	1	1	AY.33	0.000067
S	1116	T1116I	aCt	aTt	1	1	AY.34	0.000097
S	1116	T1116del	ACT	---	1	1	AY.36	0.000148
S	1116	T1116I	aCt	aTt	1	1	AY.36	0.000148
S	1116	T1116T	acT	acC	1	1	AY.36	0.000148
S	1116	T1116N	aCt	aAt	1	1	AY.39	0.000025
S	1116	T1116del2	ACt	--t	1	1	AY.4	0.000002
S	1116	T1116A	Act	Gct	1	1	AY.4	0.000002
S	1116	T1116T	acT	acC	1	1	AY.4.2	0.000022
S	1116	T1116I	aCt	aTt	1	1	AY.4.5	0.000107
S	1116	T1116I	aCt	aTt	1	1	AY.42	0.00004
S	1116	T1116A	Act	Gct	1	1	AY.43	0.000004
S	1116	T1116del	ACT	---	1	1	AY.43	0.000004
S	1116	T1116del	ACT	---	1	1	AY.44	0.000006
S	1116	T1116T	acT	acC	1	1	AY.46.2	0.000635
S	1116	T1116del	ACT	---	1	1	AY.46.2	0.000635
S	1116	T1116N	aCt	aAt	1	1	AY.5	0.000021
S	1116	T1116T	acT	acC	1	1	AY.54	0.000095
S	1116	T1116I	aCt	aTt	1	1	AY.6	0.000041
S	1116	T1116S	aCt	aGt	1	1	AY.61	0.000105
S	1116	T1116T	acT	acC	1	1	AY.61	0.000105
S	1116	T1116I	aCt	aTt	1	1	AY.63	0.000387
S	1116	T1116G	ACT	GGC	1	1	AY.67	0.000464
S	1116	T1116I	aCt	aTt	1	1	AY.7.1	0.000113
S	1116	T1116T	acT	acC	1	1	AY.7.2	0.000559
S	1116	T1116N	aCt	aAt	1	1	AY.74	0.000116
S	1116	T1116I	aCt	aTt	1	1	AY.74	0.000116
S	1116	T1116I	aCt	aTt	1	1	AY.75	0.000056
S	1116	T1116I	aCt	aTt	1	1	AY.75.1	0.00018
S	1116	T1116S	aCt	aGt	1	1	AY.75.1	0.00018
S	1116	T1116T	acT	acC	1	1	AY.75.1	0.00018
S	1116	T1116S	aCt	aGt	1	1	AY.9	0.000068
S	1116	T1116S	aCt	aGt	1	1	AY.9.1	0.000084
S	1116	T1116S	aCt	aGt	1	1	AY.98.1	0.000048
S	1116	T1116S	aCt	aGt	1	1	B.1	0.000009
S	1116	T1116del1	Act	-ct	1	1	B.1	0.000009
S	1116	T1116I	aCt	aTt	1	1	B.1.1	0.000018
S	1116	T1116P	AcT	CcC	1	1	B.1.1	0.000018
S	1116	T1116N	aCt	aAt	1	1	B.1.1.109	0.04
S	1116	T1116T	acT	acC	1	1	B.1.1.170	0.001247
S	1116	T1116A	Act	Gct	1	1	B.1.1.189	0.001513
S	1116	T1116S	aCt	aGt	1	1	B.1.1.214	0.000055
S	1116	T1116T	acT	acC	1	1	B.1.1.265	0.003155
S	1116	T1116T	acT	acC	1	1	B.1.1.277	0.000759
S	1116	T1116I	aCt	aTt	1	1	B.1.1.288	0.001916
S	1116	T1116T	acT	acC	1	1	B.1.1.288	0.001916
S	1116	T1116I	aCt	aTt	1	1	B.1.1.311	0.000358
S	1116	T1116T	acT	acC	1	1	B.1.1.318	0.000302
S	1116	T1116T	acT	acC	1	1	B.1.1.37	0.000193
S	1116	T1116T	acT	acC	1	1	B.1.1.372	0.000689
S	1116	T1116T	acT	acC	1	1	B.1.1.377	0.001381
S	1116	T1116T	acT	acC	1	1	B.1.1.398	0.003226
S	1116	T1116T	acT	acC	1	1	B.1.1.409	0.002833
S	1116	T1116N	aCt	aAt	1	1	B.1.1.409	0.002833
S	1116	T1116N	aCt	aAt	1	1	B.1.1.46	0.004367
S	1116	T1116T	acT	acC	1	1	B.1.1.47	0.005348
S	1116	T1116T	acT	acC	1	1	B.1.1.50	0.000679
S	1116	T1116S	aCt	aGt	1	1	B.1.1.519	0.00004
S	1116	T1116N	aCt	aAt	1	1	B.1.1.519	0.00004
S	1116	T1116S	aCt	aGt	1	1	B.1.1.63	0.000386
S	1116	T1116A	Act	Gct	1	1	B.1.1.7	0.000001
S	1116	T1116N	aCt	aAt	1	1	B.1.119	0.010526
S	1116	T1116T	acT	acC	1	1	B.1.157	0.002985
S	1116	T1116A	Act	Gct	1	1	B.1.160.33	0.004425
S	1116	T1116T	acT	acC	1	1	B.1.177.10	0.000878
S	1116	T1116I	aCt	aTt	1	1	B.1.177.10	0.000878
S	1116	T1116T	acT	acC	1	1	B.1.177.12	0.000152
S	1116	T1116A	Act	Gct	1	1	B.1.177.23	0.003236
S	1116	T1116I	aCt	aTt	1	1	B.1.177.60	0.000218
S	1116	T1116T	acT	acC	1	1	B.1.177.7	0.000165
S	1116	T1116T	acT	acC	1	1	B.1.177.75	0.001041
S	1116	T1116T	acT	acC	1	1	B.1.177.81	0.000189
S	1116	T1116N	aCt	aAt	1	1	B.1.192	0.009259
S	1116	T1116del	ACT	---	1	1	B.1.2	0.000009
S	1116	T1116I	aCt	aTt	1	1	B.1.221	0.000071
S	1116	T1116N	aCt	aAt	1	1	B.1.225	0.015385
S	1116	T1116T	acT	acC	1	1	B.1.242	0.018868
S	1116	T1116A	AcT	GcC	1	1	B.1.258	0.000067
S	1116	T1116T	acT	acC	1	1	B.1.258.16	0.001637
S	1116	T1116T	acT	acC	1	1	B.1.258.3	0.001675
S	1116	T1116T	acT	acC	1	1	B.1.293	0.0125
S	1116	T1116I	aCt	aTt	1	1	B.1.338	0.008621
S	1116	T1116I	aCt	aTt	1	1	B.1.346	0.001311
S	1116	T1116I	aCt	aTt	1	1	B.1.351	0.00003
S	1116	T1116A	Act	Gct	1	1	B.1.351	0.00003
S	1116	T1116N	aCt	aAt	1	1	B.1.351	0.00003
S	1116	T1116I	aCt	aTt	1	1	B.1.36.18	0.00042
S	1116	T1116T	acT	acC	1	1	B.1.362	0.001541
S	1116	T1116T	acT	acC	1	1	B.1.406	0.006061
S	1116	T1116I	aCt	aTt	1	1	B.1.424	0.008065
S	1116	T1116T	acT	acC	1	1	B.1.425	0.002994
S	1116	T1116N	aCt	aAt	1	1	B.1.429	0.000024
S	1116	T1116T	acT	acC	1	1	B.1.429	0.000024
S	1116	T1116T	acT	acC	1	1	B.1.432	0.011236
S	1116	T1116N	aCt	aAt	1	1	B.1.462	0.007246
S	1116	T1116T	acT	acC	1	1	B.1.473	0.019231
S	1116	T1116N	aCt	aAt	1	1	B.1.517	0.000427
S	1116	T1116T	acT	acC	1	1	B.1.526	0.000024
S	1116	T1116T	acT	acC	1	1	B.1.576	0.000907
S	1116	T1116I	aCt	aTt	1	1	B.1.582	0.000491
S	1116	T1116N	aCt	aAt	1	1	B.1.595	0.000261
S	1116	T1116T	acT	acC	1	1	B.1.596	0.000087
S	1116	T1116T	acT	acC	1	1	B.1.599	0.00365
S	1116	T1116del	ACT	---	1	1	B.1.630	0.005236
S	1116	T1116T	acT	acC	1	1	B.1.630	0.005236
S	1116	T1116I	aCt	aTt	1	1	B.1.637	0.000073
S	1116	T1116N	aCt	aAt	1	1	B.1.637	0.000073
S	1116	T1116N	aCt	aAt	1	1	B.40	0.000364
S	1116	T1116N	aCt	aAt	1	1	B.45	0.003831
S	1116	T1116T	acT	acC	1	1	C.35	0.000774
S	1116	T1116I	aCt	aTt	1	1	C.36.3	0.000567
S	1116	T1116del	ACT	---	1	1	C.37	0.000116
S	1116	T1116A	Act	Gct	1	1	P.1	0.000016
S	1116	T1116del	ACT	---	1	1	P.1	0.000016
S	1116	T1116I	aCt	aTt	1	1	P.1	0.000016
S	1116	T1116T	acT	acA	1	1	P.1.14	0.000048
S	1116	T1116del	ACT	---	1	1	P.1.15	0.000232
S	1116	T1116S	aCt	aGt	1	1	Q.1	0.000126
S	1116	T1116T	acT	acC	1	1	Q.8	0.000165
S	1116	T1116N	aCt	aAt	1	1	Q.8	0.000165
S	1116	T1116T	acT	acC	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.