CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 111

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S111D111DsyngaTgaC81498149121893-21895
S111D111NnonsynGatAat144514420.99792421893-21895
S111D111NnonsynGaTAaC144530.0020761221893-21895
S111D111deldelGAT---489489121893-21895
S111D111HnonsynGatCat1371360.99270121893-21895
S111D111HnonsynGaTCaC13710.0072992721893-21895
S111D111EnonsyngaTgaG85780.91764721893-21895
S111D111EnonsyngaTgaA8570.082352921893-21895
S111D111GnonsyngAtgGt28260.92857121893-21895
S111D111GnonsyngATgGG2810.035714321893-21895
S111D111GnonsyngATgGA2810.035714321893-21895
S111D111YnonsynGatTat2323121893-21895
S111D111VnonsyngAtgTt1290.7521893-21895
S111D111InonsynGAtATt1280.66666721893-21895
S111D111InonsynGATATA1240.33333321893-21895
S111D111VnonsyngATgTA1220.16666721893-21895
S111D111VnonsyngATgTG1210.083333321893-21895
S111D111del1delgaTga-1070.721893-21895
S111D111del1delGat-at1020.221893-21895
S111D111del1delgATg-N1010.121893-21895
S111D111KnonsynGaTAaA980.88888921893-21895
S111D111KnonsynGaTAaG910.11111121893-21895
S111D111AnonsyngAtgCt55121893-21895
S111D111SnonsynGAtAGt33121893-21895
S111D111TnonsynGAtACt33121893-21895
S111D111CnonsynGAtTGt22121893-21895
S111D111del2delgATg--210.521893-21895
S111D111del2delGAT--N210.521893-21895
S111D111RnonsynGAtCGt210.521893-21895
S111D111RnonsynGATAGA210.521893-21895
S111D111QnonsynGaTCaG11121893-21895
S111D111MnonsynGATATG11121893-21895
S111D111XnonsynGaTTaA11121893-21895

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S111D111DgaTgaC81498149All0.001559
S111D111DgaTgaC63856385B.1.617.10.823446
S111D111NGatAat14421445All0.000276
S111D111NGaTAaC31445All0.000001
S111D111DgaTgaC634634B.1.1.70.000568
S111D111delGAT---489489All0.000094
S111D111NGatAat240240B.1.10.004354
S111D111DgaTgaC230230B.1.214.20.13789
S111D111NGatAat209209B.1.1.70.000187
S111D111NGatAat152152AY.40.000237
S111D111HGatCat136137All0.000026
S111D111HGaTCaC1137All0
S111D111NGatAat120120B.1.1.5190.004765
S111D111NGatAat119119B.1.1.2220.024276
S111D111DgaTgaC115115B.10.001053
S111D111delGAT---105105B.1.617.20.000395
S111D111NGatAat100100B.1.1.2510.793651
S111D111DgaTgaC9090B.1.2580.005989
S111D111DgaTgaC8888AY.40.000137
S111D111DgaTgaC8686B.1.617.20.000324
S111D111EgaTgaG7885All0.000015
S111D111EgaTgaA785All0.000001
S111D111NGatAat8181B.1.20.000713
S111D111delGAT---7474AY.430.000328
S111D111DgaTgaC6969AY.430.000306
S111D111NGatAat6969AY.440.00042
S111D111HGatCat5252AY.40.000081
S111D111NGatAat3939AY.430.000173
S111D111delGAT---3636AY.40.000056
S111D111HGatCat3333C.370.00383
S111D111GgAtgGt2628All0.000005
S111D111GgATgGG128All0
S111D111GgATgGA128All0
S111D111EgaTgaG2828AY.270.001812
S111D111DgaTgaC2828AY.750.001569
S111D111delGAT---2828B.1.1.70.000025
S111D111DgaTgaC2525AY.3.10.002131
S111D111NGatAat2525B.1.4390.147929
S111D111NGatAat2424B.10.00022
S111D111DgaTgaC2424B.1.1770.000316
S111D111DgaTgaC2424B.1.5260.000564
S111D111YGatTat2323All0.000004
S111D111EgaTgaG2121AY.39.10.000832
S111D111NGatAat2020AY.420.000805
S111D111DgaTgaC2020B.1.20.000176
S111D111NGatAat1920B.1.617.20.000072
S111D111NGaTAaC120B.1.617.20.000004
S111D111delGAT---1717AY.1020.000451
S111D111delGAT---1717AY.250.000102
S111D111delGAT---1717AY.440.000103
S111D111NGatAat1717B.1.5270.062963
S111D111NGatAat1717B.1.6210.001505
S111D111DgaTgaC1616AY.160.006074
S111D111DgaTgaC1616AY.330.001068
S111D111delGAT---1616AY.4.20.000347
S111D111delGAT---1616AY.90.001082
S111D111DgaTgaC1515B.1.1280.00953
S111D111GgAtgGt1414AY.40.000022
S111D111DgaTgaC1414AY.470.000435
S111D111DgaTgaC1414AY.610.001467
S111D111delGAT---1313AY.34.10.006629
S111D111HGatCat1313B.1.617.20.000049
S111D111DgaTgaC1313P.30.020734
S111D111VgAtgTt912All0.000002
S111D111IGAtATt812All0.000002
S111D111IGATATA412All0.000001
S111D111VgATgTA212All0
S111D111VgATgTG112All0
S111D111DgaTgaC1212AY.260.00034
S111D111NGatAat1212B.1.4290.000282
S111D111EgaTgaG1111AY.1020.000292
S111D111DgaTgaC1111AY.1200.000409
S111D111NGatAat1111B.1.1600.000343
S111D111DgaTgaC1111B.1.2100.023454
S111D111del1gaTga-710All0.000001
S111D111del1Gat-at210All0
S111D111del1gATg-N110All0
S111D111DgaTgaC1010AY.440.000061
S111D111delGAT---1010B.1.1770.000132
S111D111NGatAat1010B.1.2650.012706
S111D111KGaTAaA89All0.000002
S111D111KGaTAaG19All0
S111D111NGatAat99AY.98.10.000436
S111D111DgaTgaC88AY.1190.000282
S111D111DgaTgaC88AY.250.000048
S111D111IGAtATt48AY.300.001583
S111D111IGATATA48AY.300.001583
S111D111NGatAat77AY.1180.000439
S111D111DgaTgaC77AY.16.10.003289
S111D111DgaTgaC77AY.390.000173
S111D111DgaTgaC77AY.50.000145
S111D111delGAT---77AY.610.000733
S111D111DgaTgaC77AY.9.20.000257
S111D111delGAT---77AY.9.20.000257
S111D111DgaTgaC77B.1.10.000127
S111D111DgaTgaC77B.1.1260.008929
S111D111delGAT---66AY.1030.000037
S111D111DgaTgaC66AY.230.000418
S111D111delGAT---66AY.4.2.10.000894
S111D111NGatAat66AY.850.002563
S111D111DgaTgaC66B.1.2140.021978
S111D111AgAtgCt55All0.000001
S111D111DgaTgaC55AY.1030.000031
S111D111NGatAat55AY.200.000194
S111D111NGatAat55AY.260.000142
S111D111NGatAat55AY.30.00005
S111D111delGAT---55AY.30.00005
S111D111NGatAat55AY.300.001979
S111D111delGAT---55AY.330.000334
S111D111YGatTat55AY.40.000008
S111D111NGatAat55AY.4.30.004209
S111D111delGAT---55B.10.000046
S111D111NGatAat55B.1.1.2160.004452
S111D111delGAT---55B.1.1.3180.001509
S111D111NGatAat55B.1.177.210.000382
S111D111DgaTgaC55B.1.617.30.014925
S111D111delGAT---440.222222
S111D111DgaTgaC44AY.1020.000106
S111D111NGatAat44AY.1030.000025
S111D111HGatCat44AY.1030.000025
S111D111HGatCat44AY.290.000063
S111D111KGaTAaA44AY.300.001583
S111D111EgaTgaG34AY.40.000005
S111D111EgaTgaA14AY.40.000002
S111D111NGatAat34AY.4.20.000065
S111D111NGaTAaC14AY.4.20.000022
S111D111delGAT---44AY.4.50.00043
S111D111delGAT---44AY.420.000161
S111D111HGatCat44AY.430.000018
S111D111YGatTat44AY.430.000018
S111D111DgaTgaC44AY.450.000487
S111D111DgaTgaC44AY.490.01278
S111D111DgaTgaC44AY.650.002132
S111D111DgaTgaC44B.1.1.580.021505
S111D111NGatAat44B.1.1770.000053
S111D111DgaTgaC44B.1.3510.000119
S111D111NGatAat44B.1.621.10.002023
S111D111NGatAat44C.370.000464
S111D111DgaTgaC44P.10.000063
S111D111EgaTgaA230.111111
S111D111EgaTgaG130.055556
S111D111SGAtAGt33All0.000001
S111D111TGAtACt33All0.000001
S111D111DgaTgaC33AY.1070.001398
S111D111delGAT---33AY.1080.003308
S111D111delGAT---33AY.1210.000406
S111D111DgaTgaC33AY.130.000483
S111D111HGatCat33AY.200.000117
S111D111DgaTgaC33AY.200.000117
S111D111HGatCat33AY.250.000018
S111D111DgaTgaC33AY.290.000047
S111D111delGAT---33AY.390.000074
S111D111delGAT---33AY.460.000312
S111D111delGAT---33AY.50.000062
S111D111delGAT---33AY.850.001282
S111D111delGAT---33AY.98.10.000145
S111D111HGatCat33B.1.1.70.000003
S111D111NGatAat33B.1.2210.000213
S111D111DgaTgaC33B.1.3110.000824
S111D111NGatAat33B.1.3510.000089
S111D111DgaTgaC33B.1.360.000438
S111D111DgaTgaC33B.1.4270.000151
S111D111delGAT---33B.1.4290.000071
S111D111DgaTgaC33B.1.6280.001057
S111D111NGatAat33B.390.006993
S111D111NGatAat220.111111
S111D111KGaTAaG120.055556
S111D111KGaTAaA120.055556
S111D111VgAtgTt120.055556
S111D111VgATgTG120.055556
S111D111NGatAat22A0.000774
S111D111DgaTgaC22A0.000774
S111D111NGatAat22A.10.000564
S111D111CGAtTGt22All0
S111D111RGATAGA12All0
S111D111RGAtCGt12All0
S111D111del2gATg--12All0
S111D111del2GAT--N12All0
S111D111NGatAat22AY.1020.000053
S111D111GgAtgGt22AY.1030.000012
S111D111del1Gat-at12AY.1030.000006
S111D111del1gaTga-12AY.1030.000006
S111D111GgAtgGt22AY.1100.000225
S111D111delGAT---22AY.1180.000125
S111D111delGAT---22AY.1190.000071
S111D111delGAT---22AY.1200.000074
S111D111DgaTgaC22AY.280.003781
S111D111NGatAat22AY.290.000032
S111D111AgAtgCt22AY.40.000003
S111D111HGatCat22AY.4.50.000215
S111D111DgaTgaC22AY.420.00008
S111D111HGatCat22AY.46.10.002053
S111D111DgaTgaC22AY.46.40.000329
S111D111delGAT---22AY.470.000062
S111D111NGatAat22AY.470.000062
S111D111delGAT---22AY.680.000547
S111D111EgaTgaG22AY.690.000373
S111D111HGatCat22AY.7.10.000225
S111D111NGatAat22AY.710.00095
S111D111delGAT---22AY.75.10.000361
S111D111DgaTgaC22AY.75.10.000361
S111D111GgAtgGt12AY.790.001211
S111D111GgATgGG12AY.790.001211
S111D111DgaTgaC22AY.840.000875
S111D111IGAtATt22AY.850.000854
S111D111KGaTAaA22AY.850.000854
S111D111delGAT---22AY.990.002099
S111D111DgaTgaC22B0.000256
S111D111delGAT---22B.1.10.000036
S111D111delGAT---22B.1.1.3110.000716
S111D111NGatAat22B.1.1.4340.000697
S111D111DgaTgaC22B.1.1.500.001358
S111D111DgaTgaC22B.1.1.5190.000079
S111D111DgaTgaC22B.1.177.210.000153
S111D111NGatAat22B.1.2580.000133
S111D111NGatAat22B.1.4090.001563
S111D111delGAT---22B.1.5250.000226
S111D111DgaTgaC22B.1.5960.000174
S111D111GgATgGA12B.1.617.20.000004
S111D111GgAtgGt12B.1.617.20.000004
S111D111EgaTgaA12B.1.617.20.000004
S111D111EgaTgaG12B.1.617.20.000004
S111D111NGatAat22B.1.6370.000146
S111D111YGatTat22B.60.00182
S111D111NGatAat22P.10.000032
S111D111DgaTgaC22P.1.140.000096
S111D111DgaTgaC22P.20.000373
S111D111delGAT---22R.10.00018
S111D111DgaTgaC22R.10.00018
S111D111IGAtATt110.055556
S111D111YGatTat110.055556
S111D111XGaTTaA110.055556
S111D111MGATATG110.055556
S111D111delGAT---11A0.000387
S111D111NGatAat11A.23.10.000704
S111D111DgaTgaC11A.50.001923
S111D111MGATATG11All0
S111D111QGaTCaG11All0
S111D111XGaTTaA11All0
S111D111NGatAat11AM.40.003571
S111D111NGatAat11AY.100.00053
S111D111NGatAat11AY.1000.000046
S111D111DgaTgaC11AY.1010.00049
S111D111HGatCat11AY.1010.00049
S111D111EgaTgaG11AY.1030.000006
S111D111YGatTat11AY.1030.000006
S111D111delGAT---11AY.1070.000466
S111D111NGatAat11AY.1090.00074
S111D111HGatCat11AY.1100.000113
S111D111DgaTgaC11AY.1100.000113
S111D111delGAT---11AY.1110.000183
S111D111NGatAat11AY.116.10.000311
S111D111DgaTgaC11AY.1180.000063
S111D111HGatCat11AY.1190.000035
S111D111NGatAat11AY.1200.000037
S111D111GgAtgGt11AY.1210.000135
S111D111DgaTgaC11AY.1210.000135
S111D111NGatAat11AY.130.000161
S111D111EgaTgaA11AY.130.000161
S111D111NGatAat11AY.20.000356
S111D111delGAT---11AY.210.001898
S111D111VgAtgTt11AY.230.00007
S111D111NGatAat11AY.230.00007
S111D111NGatAat11AY.23.10.000417
S111D111NGatAat11AY.250.000006
S111D111VgAtgTt11AY.250.000006
S111D111delGAT---11AY.260.000028
S111D111CGAtTGt11AY.260.000028
S111D111YGatTat11AY.290.000016
S111D111delGAT---11AY.29.10.000221
S111D111DgaTgaC11AY.30.00001
S111D111delGAT---11AY.3.10.000085
S111D111EgaTgaG11AY.330.000067
S111D111delGAT---11AY.340.000097
S111D111GgAtgGt11AY.34.10.00051
S111D111delGAT---11AY.350.000233
S111D111delGAT---11AY.360.000148
S111D111DgaTgaC11AY.370.000316
S111D111EgaTgaG11AY.4.20.000022
S111D111delGAT---11AY.4.40.000409
S111D111del1Gat-at11AY.4.40.000409
S111D111NGatAat11AY.4.50.000107
S111D111EgaTgaG11AY.410.000294
S111D111AgAtgCt11AY.430.000004
S111D111GgAtgGt11AY.430.000004
S111D111del1gaTga-11AY.430.000004
S111D111EgaTgaG11AY.430.000004
S111D111EgaTgaG11AY.440.000006
S111D111YGatTat11AY.440.000006
S111D111HGatCat11AY.440.000006
S111D111del1gaTga-11AY.440.000006
S111D111SGAtAGt11AY.440.000006
S111D111NGatAat11AY.460.000104
S111D111DgaTgaC11AY.460.000104
S111D111DgaTgaC11AY.46.30.000934
S111D111NGatAat11AY.46.40.000165
S111D111delGAT---11AY.46.60.000072
S111D111TGAtACt11AY.470.000031
S111D111GgAtgGt11AY.470.000031
S111D111TGAtACt11AY.480.000465
S111D111NGatAat11AY.50.000021
S111D111VgAtgTt11AY.50.000021
S111D111HGatCat11AY.500.000799
S111D111DgaTgaC11AY.510.000909
S111D111DgaTgaC11AY.520.000814
S111D111delGAT---11AY.540.000095
S111D111DgaTgaC11AY.550.000917
S111D111DgaTgaC11AY.580.000907
S111D111EgaTgaG11AY.590.00053
S111D111delGAT---11AY.590.00053
S111D111NGatAat11AY.590.00053
S111D111DgaTgaC11AY.590.00053
S111D111NGatAat11AY.60.000041
S111D111delGAT---11AY.600.000938
S111D111del1gaTga-11AY.610.000105
S111D111EgaTgaA11AY.610.000105
S111D111NGatAat11AY.620.000436
S111D111delGAT---11AY.640.000595
S111D111delGAT---11AY.670.000464
S111D111DgaTgaC11AY.680.000274
S111D111DgaTgaC11AY.690.000187
S111D111NGatAat11AY.690.000187
S111D111AgAtgCt11AY.690.000187
S111D111NGatAat11AY.70.000196
S111D111delGAT---11AY.7.20.000559
S111D111DgaTgaC11AY.710.000475
S111D111HGatCat11AY.710.000475
S111D111delGAT---11AY.720.001361
S111D111YGatTat11AY.750.000056
S111D111delGAT---11AY.750.000056
S111D111GgAtgGt11AY.750.000056
S111D111DgaTgaC11AY.770.001127
S111D111delGAT---11AY.770.001127
S111D111EgaTgaG11AY.790.001211
S111D111NGatAat11AY.790.001211
S111D111HGatCat11AY.850.000427
S111D111QGaTCaG11AY.850.000427
S111D111TGAtACt11AY.850.000427
S111D111DgaTgaC11AY.9.10.000084
S111D111IGAtATt11AY.9.20.000037
S111D111delGAT---11AY.940.000443
S111D111DgaTgaC11AY.960.002075
S111D111EgaTgaG11AY.98.10.000048
S111D111delGAT---11AY.99.10.001553
S111D111HGatCat11AY.99.20.000092
S111D111VgAtgTt11B.10.000009
S111D111YGatTat11B.10.000009
S111D111SGAtAGt11B.1.10.000018
S111D111EgaTgaG11B.1.10.000018
S111D111DgaTgaC11B.1.1.10.000327
S111D111NGatAat11B.1.1.1570.000913
S111D111delGAT---11B.1.1.1590.004673
S111D111NGatAat11B.1.1.1590.004673
S111D111DgaTgaC11B.1.1.1640.005155
S111D111DgaTgaC11B.1.1.2140.000055
S111D111GgAtgGt11B.1.1.2140.000055
S111D111NGatAat11B.1.1.2200.001859
S111D111EgaTgaA11B.1.1.2770.000759
S111D111NGatAat11B.1.1.280.000311
S111D111NGatAat11B.1.1.2940.001266
S111D111delGAT---11B.1.1.3060.000438
S111D111NGatAat11B.1.1.3060.000438
S111D111DgaTgaC11B.1.1.330.000421
S111D111NGatAat11B.1.1.3690.000446
S111D111NGatAat11B.1.1.4860.001577
S111D111del2GAT--N11B.1.1.5230.001563
S111D111DgaTgaC11B.1.1.540.003021
S111D111YGatTat11B.1.1.70.000001
S111D111del1gATg-N11B.1.1.70.000001
S111D111AgAtgCt11B.1.1.70.000001
S111D111delGAT---11B.1.1.700.000341
S111D111NGatAat11B.1.1.950.019608
S111D111DgaTgaC11B.1.1390.000733
S111D111DgaTgaC11B.1.1600.000031
S111D111delGAT---11B.1.1600.000031
S111D111DgaTgaC11B.1.160.280.002924
S111D111HGatCat11B.1.1770.000013
S111D111DgaTgaC11B.1.177.160.000664
S111D111delGAT---11B.1.177.180.00116
S111D111delGAT---11B.1.177.40.000211
S111D111delGAT---11B.1.177.510.004566
S111D111DgaTgaC11B.1.177.510.004566
S111D111delGAT---11B.1.177.690.001484
S111D111NGatAat11B.1.177.850.005435
S111D111NGatAat11B.1.1950.005025
S111D111VgAtgTt11B.1.20.000009
S111D111NGatAat11B.1.2320.000537
S111D111HGatCat11B.1.2430.00007
S111D111NGatAat11B.1.2430.00007
S111D111DgaTgaC11B.1.258.170.000104
S111D111NGatAat11B.1.2980.002114
S111D111NGatAat11B.1.3320.003497
S111D111NGatAat11B.1.3490.000715
S111D111del1gaTga-11B.1.360.000146
S111D111NGatAat11B.1.3780.006849
S111D111NGatAat11B.1.3960.000706
S111D111YGatTat11B.1.4270.00005
S111D111VgAtgTt11B.1.4270.00005
S111D111delGAT---11B.1.4280.00102
S111D111YGatTat11B.1.4290.000024
S111D111DgaTgaC11B.1.4620.007246
S111D111NGatAat11B.1.4680.005714
S111D111NGatAat11B.1.5170.000427
S111D111RGAtCGt11B.1.5250.000113
S111D111DgaTgaC11B.1.5330.009615
S111D111DgaTgaC11B.1.5760.000907
S111D111NGatAat11B.1.5770.000687
S111D111VgATgTA11B.1.5850.027778
S111D111YGatTat11B.1.5950.000261
S111D111YGatTat11B.1.5960.000087
S111D111del1gaTga-11B.1.5960.000087
S111D111VgAtgTt11B.1.5960.000087
S111D111NGatAat11B.1.5960.000087
S111D111VgATgTA11B.1.617.10.000129
S111D111NGaTAaC11B.1.617.10.000129
S111D111del1gaTga-11B.1.617.10.000129
S111D111HGaTCaC11B.1.617.10.000129
S111D111KGaTAaA11B.1.617.20.000004
S111D111SGAtAGt11B.1.617.20.000004
S111D111CGAtTGt11B.1.617.20.000004
S111D111VgAtgTt11B.1.617.20.000004
S111D111RGATAGA11B.1.617.20.000004
S111D111del2gATg--11B.1.617.20.000004
S111D111delGAT---11B.1.6200.000946
S111D111delGAT---11B.1.6210.000089
S111D111DgaTgaC11B.1.6210.000089
S111D111delGAT---11B.1.6370.000073
S111D111NGatAat11B.1.90.006173
S111D111DgaTgaC11B.1.9.50.005682
S111D111NGatAat11B.1.940.027027
S111D111YGatTat11B.4.50.011905
S111D111NGatAat11C.1.20.004255
S111D111delGAT---11C.36.30.000567
S111D111DgaTgaC11D.20.000075
S111D111HGatCat11D.20.000075
S111D111NGatAat11P.1.140.000048
S111D111DgaTgaC11P.1.150.000232
S111D111NGatAat11P.20.000187
S111D111DgaTgaC11Q.80.000165
S111D111EgaTgaG11R.10.00009