CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1104 | V1104L | nonsyn | Gta | Tta | 40268 | 39773 | 0.987707 | 24872-24874 | |
S | 1104 | V1104L | nonsyn | Gta | Cta | 40268 | 493 | 0.012243 | 24872-24874 | |
S | 1104 | V1104L | nonsyn | GtA | TtG | 40268 | 2 | 0.0000496672 | 24872-24874 | |
S | 1104 | V1104V | syn | gtA | gtG | 1133 | 1046 | 0.923213 | 24872-24874 | |
S | 1104 | V1104V | syn | gtA | gtC | 1133 | 48 | 0.0423654 | 24872-24874 | |
S | 1104 | V1104V | syn | gtA | gtT | 1133 | 39 | 0.0344219 | 24872-24874 | |
S | 1104 | V1104I | nonsyn | Gta | Ata | 829 | 827 | 0.997587 | 24872-24874 | |
S | 1104 | V1104I | nonsyn | GtA | AtT | 829 | 1 | 0.00120627 | 24872-24874 | |
S | 1104 | V1104I | nonsyn | GtA | AtC | 829 | 1 | 0.00120627 | 24872-24874 | |
S | 1104 | V1104A | nonsyn | gTa | gCa | 36 | 34 | 0.944444 | 24872-24874 | |
S | 1104 | V1104A | nonsyn | gTA | gCC | 36 | 1 | 0.0277778 | 24872-24874 | |
S | 1104 | V1104A | nonsyn | gTA | gCG | 36 | 1 | 0.0277778 | 24872-24874 | |
S | 1104 | V1104del | del | GTA | --- | 16 | 16 | 1 | 24872-24874 | |
S | 1104 | V1104del1 | del | Gta | -ta | 10 | 6 | 0.6 | 24872-24874 | |
S | 1104 | V1104del1 | del | gtA | gt- | 10 | 4 | 0.4 | 24872-24874 | |
S | 1104 | V1104P | nonsyn | GTa | CCa | 5 | 3 | 0.6 | 24872-24874 | |
S | 1104 | V1104P | nonsyn | GTA | CCT | 5 | 2 | 0.4 | 24872-24874 | |
S | 1104 | V1104E | nonsyn | gTa | gAa | 3 | 3 | 1 | 24872-24874 | |
S | 1104 | V1104G | nonsyn | gTa | gGa | 3 | 3 | 1 | 24872-24874 | |
S | 1104 | V1104X | nonsyn | GTa | TGa | 3 | 2 | 0.666667 | 24872-24874 | |
S | 1104 | V1104X | nonsyn | GTa | TAa | 3 | 1 | 0.333333 | 24872-24874 | |
S | 1104 | V1104T | nonsyn | GTA | ACC | 2 | 1 | 0.5 | 24872-24874 | |
S | 1104 | V1104T | nonsyn | GTa | ACa | 2 | 1 | 0.5 | 24872-24874 | |
S | 1104 | V1104F | nonsyn | GtA | TtT | 1 | 1 | 1 | 24872-24874 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1104 | V1104L | Gta | Tta | 39773 | 40268 | All | 0.007607 |
S | 1104 | V1104L | Gta | Cta | 493 | 40268 | All | 0.000094 |
S | 1104 | V1104L | GtA | TtG | 2 | 40268 | All | 0 |
S | 1104 | V1104L | Gta | Tta | 25703 | 25703 | AY.20 | 0.998951 |
S | 1104 | V1104L | Gta | Tta | 6513 | 6514 | AY.36 | 0.965318 |
S | 1104 | V1104L | GtA | TtG | 1 | 6514 | AY.36 | 0.000148 |
S | 1104 | V1104L | Gta | Tta | 1392 | 1411 | B.1.617.2 | 0.005241 |
S | 1104 | V1104L | Gta | Cta | 19 | 1411 | B.1.617.2 | 0.000072 |
S | 1104 | V1104V | gtA | gtG | 1046 | 1133 | All | 0.0002 |
S | 1104 | V1104V | gtA | gtC | 48 | 1133 | All | 0.000009 |
S | 1104 | V1104V | gtA | gtT | 39 | 1133 | All | 0.000007 |
S | 1104 | V1104L | Gta | Tta | 834 | 967 | B.1.1.7 | 0.000747 |
S | 1104 | V1104L | Gta | Cta | 133 | 967 | B.1.1.7 | 0.000119 |
S | 1104 | V1104V | gtA | gtG | 841 | 841 | B.1.1.207 | 0.99409 |
S | 1104 | V1104I | Gta | Ata | 827 | 829 | All | 0.000158 |
S | 1104 | V1104I | GtA | AtC | 1 | 829 | All | 0 |
S | 1104 | V1104I | GtA | AtT | 1 | 829 | All | 0 |
S | 1104 | V1104L | Gta | Tta | 720 | 818 | AY.4 | 0.001121 |
S | 1104 | V1104L | Gta | Cta | 98 | 818 | AY.4 | 0.000153 |
S | 1104 | V1104L | Gta | Tta | 591 | 596 | AY.43 | 0.002618 |
S | 1104 | V1104L | Gta | Cta | 5 | 596 | AY.43 | 0.000022 |
S | 1104 | V1104I | Gta | Ata | 521 | 521 | B.1.1.7 | 0.000466 |
S | 1104 | V1104L | Gta | Tta | 417 | 417 | AY.22 | 0.872385 |
S | 1104 | V1104L | Gta | Tta | 270 | 274 | B.1.1 | 0.004898 |
S | 1104 | V1104L | Gta | Cta | 4 | 274 | B.1.1 | 0.000073 |
S | 1104 | V1104L | Gta | Tta | 199 | 236 | AY.26 | 0.005634 |
S | 1104 | V1104L | Gta | Cta | 37 | 236 | AY.26 | 0.001047 |
S | 1104 | V1104L | Gta | Tta | 157 | 196 | AY.44 | 0.000956 |
S | 1104 | V1104L | Gta | Cta | 39 | 196 | AY.44 | 0.000237 |
S | 1104 | V1104L | Gta | Tta | 181 | 181 | B.1.177.75 | 0.188345 |
S | 1104 | V1104L | Gta | Tta | 172 | 172 | B.1.160.32 | 0.738197 |
S | 1104 | V1104L | Gta | Tta | 134 | 146 | AY.25 | 0.000806 |
S | 1104 | V1104L | Gta | Cta | 12 | 146 | AY.25 | 0.000072 |
S | 1104 | V1104L | Gta | Tta | 137 | 142 | B.1.177 | 0.001804 |
S | 1104 | V1104L | Gta | Cta | 5 | 142 | B.1.177 | 0.000066 |
S | 1104 | V1104L | Gta | Tta | 88 | 97 | AY.103 | 0.000546 |
S | 1104 | V1104L | Gta | Cta | 9 | 97 | AY.103 | 0.000056 |
S | 1104 | V1104L | Gta | Tta | 71 | 95 | B.1.429 | 0.001671 |
S | 1104 | V1104L | Gta | Cta | 24 | 95 | B.1.429 | 0.000565 |
S | 1104 | V1104L | Gta | Tta | 72 | 82 | AY.5 | 0.001487 |
S | 1104 | V1104L | Gta | Cta | 10 | 82 | AY.5 | 0.000206 |
S | 1104 | V1104L | Gta | Tta | 77 | 78 | AY.117 | 0.006508 |
S | 1104 | V1104L | Gta | Cta | 1 | 78 | AY.117 | 0.000085 |
S | 1104 | V1104L | Gta | Tta | 72 | 77 | AY.3 | 0.000716 |
S | 1104 | V1104L | Gta | Cta | 5 | 77 | AY.3 | 0.00005 |
S | 1104 | V1104L | Gta | Tta | 76 | 77 | B.1 | 0.000696 |
S | 1104 | V1104L | Gta | Cta | 1 | 77 | B.1 | 0.000009 |
S | 1104 | V1104L | Gta | Tta | 74 | 75 | AY.42 | 0.002977 |
S | 1104 | V1104L | Gta | Cta | 1 | 75 | AY.42 | 0.00004 |
S | 1104 | V1104L | Gta | Tta | 74 | 74 | B.1.351 | 0.0022 |
S | 1104 | V1104L | Gta | Tta | 59 | 60 | AY.121 | 0.007984 |
S | 1104 | V1104L | Gta | Cta | 1 | 60 | AY.121 | 0.000135 |
S | 1104 | V1104L | Gta | Tta | 54 | 54 | AY.45 | 0.006571 |
S | 1104 | V1104V | gtA | gtC | 46 | 52 | AY.44 | 0.00028 |
S | 1104 | V1104V | gtA | gtG | 4 | 52 | AY.44 | 0.000024 |
S | 1104 | V1104V | gtA | gtT | 2 | 52 | AY.44 | 0.000012 |
S | 1104 | V1104L | Gta | Tta | 48 | 51 | B.1.2 | 0.000423 |
S | 1104 | V1104L | Gta | Cta | 3 | 51 | B.1.2 | 0.000026 |
S | 1104 | V1104L | Gta | Tta | 42 | 47 | AY.39 | 0.001038 |
S | 1104 | V1104L | Gta | Cta | 5 | 47 | AY.39 | 0.000124 |
S | 1104 | V1104L | Gta | Tta | 43 | 45 | AY.120 | 0.001599 |
S | 1104 | V1104L | Gta | Cta | 2 | 45 | AY.120 | 0.000074 |
S | 1104 | V1104L | Gta | Tta | 45 | 45 | B.1.1.228 | 0.137195 |
S | 1104 | V1104L | Gta | Tta | 42 | 45 | P.1 | 0.000662 |
S | 1104 | V1104L | Gta | Cta | 3 | 45 | P.1 | 0.000047 |
S | 1104 | V1104V | gtA | gtG | 24 | 44 | B.1.1.7 | 0.000021 |
S | 1104 | V1104V | gtA | gtT | 20 | 44 | B.1.1.7 | 0.000018 |
S | 1104 | V1104L | Gta | Tta | 42 | 42 | AY.31 | 0.777778 |
S | 1104 | V1104I | Gta | Ata | 42 | 42 | AY.4 | 0.000065 |
S | 1104 | V1104L | Gta | Tta | 38 | 38 | AY.119 | 0.001342 |
S | 1104 | V1104I | Gta | Ata | 38 | 38 | B.1.427 | 0.001919 |
S | 1104 | V1104A | gTa | gCa | 34 | 36 | All | 0.000007 |
S | 1104 | V1104A | gTA | gCC | 1 | 36 | All | 0 |
S | 1104 | V1104A | gTA | gCG | 1 | 36 | All | 0 |
S | 1104 | V1104L | Gta | Tta | 36 | 36 | B.1.177.44 | 0.018682 |
S | 1104 | V1104L | Gta | Tta | 32 | 32 | B.1.1.519 | 0.001271 |
S | 1104 | V1104L | Gta | Tta | 32 | 32 | P.1.17 | 0.005176 |
S | 1104 | V1104L | Gta | Tta | 29 | 30 | AY.23 | 0.002023 |
S | 1104 | V1104L | Gta | Cta | 1 | 30 | AY.23 | 0.00007 |
S | 1104 | V1104V | gtA | gtG | 29 | 29 | AY.4 | 0.000045 |
S | 1104 | V1104L | Gta | Tta | 27 | 27 | AY.92 | 0.007756 |
S | 1104 | V1104I | Gta | Ata | 27 | 27 | B.1.1.421 | 0.818182 |
S | 1104 | V1104L | Gta | Tta | 26 | 26 | B.1.36 | 0.003793 |
S | 1104 | V1104L | Gta | Tta | 25 | 25 | AY.104 | 0.049603 |
S | 1104 | V1104L | Gta | Tta | 25 | 25 | AY.98 | 0.001975 |
S | 1104 | V1104L | Gta | Tta | 24 | 25 | B.1.1.33 | 0.010101 |
S | 1104 | V1104L | Gta | Cta | 1 | 25 | B.1.1.33 | 0.000421 |
S | 1104 | V1104L | Gta | Tta | 25 | 25 | B.1.240 | 0.005389 |
S | 1104 | V1104L | Gta | Tta | 25 | 25 | B.1.466.2 | 0.009781 |
S | 1104 | V1104I | Gta | Ata | 23 | 23 | AY.103 | 0.000143 |
S | 1104 | V1104L | Gta | Tta | 21 | 22 | AY.4.2 | 0.000455 |
S | 1104 | V1104L | Gta | Cta | 1 | 22 | AY.4.2 | 0.000022 |
S | 1104 | V1104L | Gta | Tta | 21 | 21 | AY.33 | 0.001402 |
S | 1104 | V1104V | gtA | gtG | 20 | 20 | AY.27 | 0.001294 |
S | 1104 | V1104L | Gta | Tta | 19 | 20 | AY.54 | 0.001812 |
S | 1104 | V1104L | Gta | Cta | 1 | 20 | AY.54 | 0.000095 |
S | 1104 | V1104L | Gta | Cta | 20 | 20 | L.4 | 1 |
S | 1104 | V1104L | Gta | Tta | 18 | 19 | AY.98.1 | 0.000872 |
S | 1104 | V1104L | Gta | Cta | 1 | 19 | AY.98.1 | 0.000048 |
S | 1104 | V1104L | Gta | Tta | 19 | 19 | B.1.1.433 | 0.027066 |
S | 1104 | V1104L | Gta | Tta | 19 | 19 | B.1.1.50 | 0.012899 |
S | 1104 | V1104L | Gta | Tta | 16 | 18 | AY.102 | 0.000424 |
S | 1104 | V1104L | Gta | Cta | 2 | 18 | AY.102 | 0.000053 |
S | 1104 | V1104V | gtA | gtG | 18 | 18 | AY.43 | 0.00008 |
S | 1104 | V1104L | Gta | Tta | 18 | 18 | AY.47 | 0.00056 |
S | 1104 | V1104V | gtA | gtG | 18 | 18 | B.1.258 | 0.001198 |
S | 1104 | V1104L | Gta | Tta | 16 | 17 | AY.55 | 0.014679 |
S | 1104 | V1104L | GtA | TtG | 1 | 17 | AY.55 | 0.000917 |
S | 1104 | V1104L | Gta | Tta | 17 | 17 | B.1.1.299 | 0.207317 |
S | 1104 | V1104L | Gta | Tta | 17 | 17 | B.1.1.341 | 1 |
S | 1104 | V1104del | GTA | --- | 16 | 16 | All | 0.000003 |
S | 1104 | V1104L | Gta | Tta | 16 | 16 | AY.118 | 0.001002 |
S | 1104 | V1104L | Gta | Tta | 16 | 16 | AY.46.4 | 0.002632 |
S | 1104 | V1104L | Gta | Tta | 15 | 16 | AY.5.3 | 0.005061 |
S | 1104 | V1104L | Gta | Cta | 1 | 16 | AY.5.3 | 0.000337 |
S | 1104 | V1104L | Gta | Tta | 16 | 16 | B.1.1.39 | 0.008155 |
S | 1104 | V1104V | gtA | gtG | 16 | 16 | B.1.617.2 | 0.00006 |
S | 1104 | V1104L | Gta | Tta | 13 | 15 | AY.100 | 0.000598 |
S | 1104 | V1104L | Gta | Cta | 2 | 15 | AY.100 | 0.000092 |
S | 1104 | V1104L | Gta | Tta | 15 | 15 | AY.34 | 0.001454 |
S | 1104 | V1104L | Gta | Tta | 10 | 15 | B.1.526 | 0.000235 |
S | 1104 | V1104L | Gta | Cta | 5 | 15 | B.1.526 | 0.000118 |
S | 1104 | V1104L | Gta | Tta | 14 | 14 | AY.113 | 0.001993 |
S | 1104 | V1104L | Gta | Tta | 14 | 14 | AY.114 | 0.003235 |
S | 1104 | V1104I | Gta | Ata | 14 | 14 | AY.44 | 0.000085 |
S | 1104 | V1104L | Gta | Tta | 14 | 14 | AY.46 | 0.001457 |
S | 1104 | V1104L | Gta | Tta | 14 | 14 | AY.75 | 0.000784 |
S | 1104 | V1104L | Gta | Tta | 13 | 13 | AY.106 | 0.004354 |
S | 1104 | V1104L | Gta | Tta | 13 | 13 | AY.78 | 0.020031 |
S | 1104 | V1104V | gtA | gtG | 13 | 13 | B.1 | 0.000119 |
S | 1104 | V1104L | Gta | Tta | 11 | 13 | B.1.160 | 0.000343 |
S | 1104 | V1104L | Gta | Cta | 2 | 13 | B.1.160 | 0.000062 |
S | 1104 | V1104L | Gta | Tta | 12 | 12 | AY.46.2 | 0.007624 |
S | 1104 | V1104L | Gta | Tta | 12 | 12 | AY.46.6 | 0.000866 |
S | 1104 | V1104L | Gta | Tta | 12 | 12 | B.1.243 | 0.000835 |
S | 1104 | V1104I | Gta | Ata | 12 | 12 | B.1.402 | 0.117647 |
S | 1104 | V1104L | Gta | Tta | 11 | 11 | AY.29 | 0.000174 |
S | 1104 | V1104I | Gta | Ata | 11 | 11 | AY.39 | 0.000272 |
S | 1104 | V1104L | Gta | Tta | 11 | 11 | B.1.177.81 | 0.002083 |
S | 1104 | V1104L | Gta | Tta | 11 | 11 | B.1.232 | 0.005911 |
S | 1104 | V1104del1 | Gta | -ta | 6 | 10 | All | 0.000001 |
S | 1104 | V1104del1 | gtA | gt- | 4 | 10 | All | 0.000001 |
S | 1104 | V1104L | Gta | Tta | 10 | 10 | AY.111 | 0.001832 |
S | 1104 | V1104L | Gta | Tta | 10 | 10 | AY.39.1 | 0.000396 |
S | 1104 | V1104L | Gta | Tta | 10 | 10 | AY.84 | 0.004374 |
S | 1104 | V1104V | gtA | gtT | 10 | 10 | B.1.369 | 0.002852 |
S | 1104 | V1104I | Gta | Ata | 10 | 10 | P.1 | 0.000158 |
S | 1104 | V1104L | Gta | Tta | 9 | 9 | B.1.1.416 | 0.008145 |
S | 1104 | V1104L | Gta | Tta | 8 | 8 | AY.116.1 | 0.002491 |
S | 1104 | V1104I | Gta | Ata | 8 | 8 | AY.81 | 0.015936 |
S | 1104 | V1104L | Gta | Tta | 8 | 8 | AY.9.1 | 0.00067 |
S | 1104 | V1104L | Gta | Tta | 8 | 8 | AY.95 | 0.006088 |
S | 1104 | V1104L | Gta | Tta | 8 | 8 | B | 0.001022 |
S | 1104 | V1104L | Gta | Cta | 7 | 8 | B.1.1.316 | 0.006475 |
S | 1104 | V1104L | Gta | Tta | 1 | 8 | B.1.1.316 | 0.000925 |
S | 1104 | V1104A | gTa | gCa | 8 | 8 | B.1.1.7 | 0.000007 |
S | 1104 | V1104I | Gta | Ata | 8 | 8 | B.1.429 | 0.000188 |
S | 1104 | V1104L | Gta | Tta | 4 | 7 | AY.116 | 0.001147 |
S | 1104 | V1104L | Gta | Cta | 3 | 7 | AY.116 | 0.00086 |
S | 1104 | V1104I | Gta | Ata | 7 | 7 | AY.121 | 0.000947 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | AY.16 | 0.002658 |
S | 1104 | V1104I | Gta | Ata | 7 | 7 | AY.25 | 0.000042 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | AY.32 | 0.003727 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | AY.37 | 0.002212 |
S | 1104 | V1104A | gTa | gCa | 7 | 7 | AY.39.1 | 0.000277 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | AY.4.3 | 0.005892 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | AY.48 | 0.003256 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | AY.75.1 | 0.001262 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | B.1.111 | 0.008226 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | B.1.427 | 0.000353 |
S | 1104 | V1104L | Gta | Tta | 7 | 7 | B.1.448 | 0.018373 |
S | 1104 | V1104I | Gta | Ata | 7 | 7 | B.1.617.2 | 0.000026 |
S | 1104 | V1104I | Gta | Ata | 7 | 7 | B.1.623 | 0.003755 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | AY.108 | 0.006615 |
S | 1104 | V1104I | Gta | Ata | 6 | 6 | AY.3 | 0.00006 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | AY.50 | 0.004796 |
S | 1104 | V1104L | Gta | Tta | 4 | 6 | AY.58 | 0.00363 |
S | 1104 | V1104L | Gta | Cta | 2 | 6 | AY.58 | 0.001815 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | AY.73 | 0.003992 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | AY.74 | 0.000694 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | AY.93 | 0.001638 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | AY.99.2 | 0.000553 |
S | 1104 | V1104I | Gta | Ata | 6 | 6 | B.1 | 0.000055 |
S | 1104 | V1104I | Gta | Ata | 6 | 6 | B.1.1 | 0.000109 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | B.1.1.1 | 0.00196 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | B.1.1.219 | 0.03 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | B.1.1.306 | 0.00263 |
S | 1104 | V1104L | Gta | Tta | 4 | 6 | B.1.1.37 | 0.000771 |
S | 1104 | V1104L | Gta | Cta | 2 | 6 | B.1.1.37 | 0.000386 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | B.1.1.419 | 0.044444 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | B.1.160.30 | 0.017857 |
S | 1104 | V1104L | Gta | Tta | 6 | 6 | B.1.525 | 0.000679 |
S | 1104 | V1104P | GTa | CCa | 3 | 5 | All | 0.000001 |
S | 1104 | V1104P | GTA | CCT | 2 | 5 | All | 0 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | AY.105 | 0.003215 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | AY.110 | 0.000563 |
S | 1104 | V1104V | gtA | gtG | 5 | 5 | AY.46 | 0.00052 |
S | 1104 | V1104L | Gta | Tta | 4 | 5 | AY.46.3 | 0.003735 |
S | 1104 | V1104L | Gta | Cta | 1 | 5 | AY.46.3 | 0.000934 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | AY.56 | 0.008026 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | AY.69 | 0.000933 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | AY.86 | 0.004149 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | B.1.1.174 | 0.016892 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | B.1.1.222 | 0.00102 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | B.1.177.83 | 0.007407 |
S | 1104 | V1104I | Gta | Ata | 4 | 5 | B.1.526 | 0.000094 |
S | 1104 | V1104I | GtA | AtT | 1 | 5 | B.1.526 | 0.000024 |
S | 1104 | V1104L | Gta | Cta | 3 | 5 | B.1.621 | 0.000266 |
S | 1104 | V1104L | Gta | Tta | 2 | 5 | B.1.621 | 0.000177 |
S | 1104 | V1104L | Gta | Tta | 5 | 5 | C.37 | 0.00058 |
S | 1104 | V1104P | GTa | CCa | 2 | 4 | 0.111111 | |
S | 1104 | V1104P | GTA | CCT | 2 | 4 | 0.111111 | |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.10 | 0.00212 |
S | 1104 | V1104V | gtA | gtG | 4 | 4 | AY.103 | 0.000025 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.13 | 0.000644 |
S | 1104 | V1104V | gtA | gtG | 4 | 4 | AY.3 | 0.00004 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.3.1 | 0.000341 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.38 | 0.001997 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.59 | 0.002119 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.6 | 0.000165 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.71 | 0.0019 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.82 | 0.005427 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.9 | 0.00027 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.9.2 | 0.000147 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | AY.90 | 0.002738 |
S | 1104 | V1104L | Gta | Cta | 4 | 4 | B.1.1.138 | 0.024242 |
S | 1104 | V1104V | gtA | gtG | 4 | 4 | B.1.1.33 | 0.001684 |
S | 1104 | V1104V | gtA | gtG | 4 | 4 | B.1.2 | 0.000035 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | B.1.258 | 0.000266 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | B.1.311 | 0.001098 |
S | 1104 | V1104I | Gta | Ata | 4 | 4 | B.1.351 | 0.000119 |
S | 1104 | V1104L | Gta | Cta | 2 | 4 | B.1.369 | 0.00057 |
S | 1104 | V1104L | Gta | Tta | 2 | 4 | B.1.369 | 0.00057 |
S | 1104 | V1104L | Gta | Cta | 2 | 4 | B.1.596 | 0.000174 |
S | 1104 | V1104L | Gta | Tta | 2 | 4 | B.1.596 | 0.000174 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | B.1.609 | 0.001918 |
S | 1104 | V1104L | Gta | Cta | 3 | 4 | C.36 | 0.002732 |
S | 1104 | V1104L | Gta | Tta | 1 | 4 | C.36 | 0.000911 |
S | 1104 | V1104V | gtA | gtG | 4 | 4 | P.1 | 0.000063 |
S | 1104 | V1104L | Gta | Tta | 4 | 4 | P.1.14 | 0.000191 |
S | 1104 | V1104I | Gta | Ata | 4 | 4 | P.1.17 | 0.000647 |
S | 1104 | V1104L | Gta | Tta | 3 | 4 | P.2 | 0.00056 |
S | 1104 | V1104L | Gta | Cta | 1 | 4 | P.2 | 0.000187 |
S | 1104 | V1104G | gTa | gGa | 3 | 3 | All | 0.000001 |
S | 1104 | V1104E | gTa | gAa | 3 | 3 | All | 0.000001 |
S | 1104 | V1104X | GTa | TGa | 2 | 3 | All | 0 |
S | 1104 | V1104X | GTa | TAa | 1 | 3 | All | 0 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.109 | 0.002219 |
S | 1104 | V1104V | gtA | gtG | 3 | 3 | AY.111 | 0.000549 |
S | 1104 | V1104I | Gta | Ata | 3 | 3 | AY.120 | 0.000112 |
S | 1104 | V1104V | gtA | gtG | 3 | 3 | AY.14 | 0.000264 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.14 | 0.000264 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.19 | 0.003421 |
S | 1104 | V1104del1 | Gta | -ta | 3 | 3 | AY.20 | 0.000117 |
S | 1104 | V1104A | gTa | gCa | 3 | 3 | AY.4 | 0.000005 |
S | 1104 | V1104V | gtA | gtG | 3 | 3 | AY.4.2 | 0.000065 |
S | 1104 | V1104V | gtA | gtG | 3 | 3 | AY.4.3 | 0.002525 |
S | 1104 | V1104del | GTA | --- | 3 | 3 | AY.43 | 0.000013 |
S | 1104 | V1104I | Gta | Ata | 3 | 3 | AY.43 | 0.000013 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.46.1 | 0.00308 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.51 | 0.002727 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.53 | 0.000863 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.77 | 0.003382 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | AY.85 | 0.001282 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.1.153 | 0.003286 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.1.216 | 0.002671 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.1.280 | 0.009259 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.1.54 | 0.009063 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.1.71 | 0.018182 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.160.16 | 0.002788 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.170 | 0.012931 |
S | 1104 | V1104A | gTa | gCa | 3 | 3 | B.1.177 | 0.00004 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.177.86 | 0.00055 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.287 | 0.090909 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.36.38 | 0.004926 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.588 | 0.00273 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.605 | 0.017857 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.617.1 | 0.000387 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | B.1.637 | 0.000219 |
S | 1104 | V1104I | Gta | Ata | 3 | 3 | P.1.14 | 0.000143 |
S | 1104 | V1104L | Gta | Tta | 3 | 3 | R.1 | 0.00027 |
S | 1104 | V1104X | GTa | TGa | 2 | 2 | 0.111111 | |
S | 1104 | V1104G | gTa | gGa | 2 | 2 | 0.111111 | |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | 0.111111 | |
S | 1104 | V1104I | Gta | Ata | 1 | 2 | 0.055556 | |
S | 1104 | V1104A | gTa | gCa | 1 | 2 | 0.055556 | |
S | 1104 | V1104T | GTa | ACa | 1 | 2 | 0.055556 | |
S | 1104 | V1104T | GTA | ACC | 1 | 2 | 0.055556 | |
S | 1104 | V1104I | GtA | AtC | 1 | 2 | 0.055556 | |
S | 1104 | V1104A | gTA | gCC | 1 | 2 | 0.055556 | |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AD.2 | 0.000438 |
S | 1104 | V1104T | GTA | ACC | 1 | 2 | All | 0 |
S | 1104 | V1104T | GTa | ACa | 1 | 2 | All | 0 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AU.2 | 0.004843 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.101 | 0.000981 |
S | 1104 | V1104V | gtA | gtG | 2 | 2 | AY.102 | 0.000053 |
S | 1104 | V1104A | gTa | gCa | 2 | 2 | AY.119 | 0.000071 |
S | 1104 | V1104V | gtA | gtT | 2 | 2 | AY.119 | 0.000071 |
S | 1104 | V1104del | GTA | --- | 2 | 2 | AY.120 | 0.000074 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.35 | 0.000466 |
S | 1104 | V1104del | GTA | --- | 2 | 2 | AY.4 | 0.000003 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.4.5 | 0.000215 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | AY.4.5 | 0.000215 |
S | 1104 | V1104A | gTa | gCa | 2 | 2 | AY.43 | 0.000009 |
S | 1104 | V1104del1 | gtA | gt- | 2 | 2 | AY.44 | 0.000012 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.5.4 | 0.000553 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | AY.59 | 0.001059 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.61 | 0.00021 |
S | 1104 | V1104L | Gta | Tta | 1 | 2 | AY.63 | 0.000387 |
S | 1104 | V1104L | Gta | Cta | 1 | 2 | AY.63 | 0.000387 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.64 | 0.00119 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.68 | 0.000547 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | AY.75 | 0.000112 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.79 | 0.002421 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.81 | 0.003984 |
S | 1104 | V1104V | gtA | gtG | 2 | 2 | AY.9.2 | 0.000073 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.91 | 0.001461 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AY.99 | 0.002099 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | AZ.1 | 0.001735 |
S | 1104 | V1104V | gtA | gtG | 2 | 2 | B.1.1 | 0.000036 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | B.1.1.10 | 0.00223 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.1.28 | 0.000622 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.1.284 | 0.000215 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.1.317 | 0.000823 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.1.326 | 0.003521 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.1.372 | 0.001377 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | B.1.1.397 | 0.004505 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.1.522 | 0.034483 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | B.1.1.526 | 0.007092 |
S | 1104 | V1104del | GTA | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 1104 | V1104L | Gta | Cta | 2 | 2 | B.1.128 | 0.001271 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | B.1.160 | 0.000062 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.177.43 | 0.002954 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.177.88 | 0.024691 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.177.89 | 0.04878 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.210 | 0.004264 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.241 | 0.001623 |
S | 1104 | V1104I | Gta | Ata | 2 | 2 | B.1.389 | 0.002004 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.395 | 0.014085 |
S | 1104 | V1104V | gtA | gtT | 1 | 2 | B.1.429 | 0.000024 |
S | 1104 | V1104V | gtA | gtG | 1 | 2 | B.1.429 | 0.000024 |
S | 1104 | V1104V | gtA | gtG | 2 | 2 | B.1.526 | 0.000047 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.551 | 0.002581 |
S | 1104 | V1104L | Gta | Cta | 1 | 2 | B.1.561 | 0.000397 |
S | 1104 | V1104L | Gta | Tta | 1 | 2 | B.1.561 | 0.000397 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.574 | 0.004301 |
S | 1104 | V1104V | gtA | gtG | 2 | 2 | B.1.596 | 0.000174 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.628 | 0.000705 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | B.1.8 | 0.003945 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | D.2 | 0.00015 |
S | 1104 | V1104V | gtA | gtG | 2 | 2 | P.2 | 0.000373 |
S | 1104 | V1104L | Gta | Tta | 2 | 2 | Q.4 | 0.00091 |
S | 1104 | V1104V | gtA | gtC | 1 | 1 | 0.055556 | |
S | 1104 | V1104L | Gta | Cta | 1 | 1 | A.1 | 0.000282 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | A.19 | 0.009434 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | A.2 | 0.000662 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | A.21 | 0.00277 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | A.27 | 0.001656 |
S | 1104 | V1104F | GtA | TtT | 1 | 1 | All | 0 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | AY.100 | 0.000046 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.100 | 0.000046 |
S | 1104 | V1104G | gTa | gGa | 1 | 1 | AY.103 | 0.000006 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | AY.103 | 0.000006 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.113 | 0.000142 |
S | 1104 | V1104del | GTA | --- | 1 | 1 | AY.118 | 0.000063 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.119 | 0.000035 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.13 | 0.000161 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.14 | 0.000088 |
S | 1104 | V1104L | Gta | Cta | 1 | 1 | AY.15 | 0.002222 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.16 | 0.00038 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.23 | 0.00007 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.24 | 0.000431 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.27 | 0.000065 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.28 | 0.00189 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.29 | 0.000016 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | AY.29 | 0.000016 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.29.1 | 0.000221 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | AY.34.1 | 0.00051 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.34.1 | 0.00051 |
S | 1104 | V1104del | GTA | --- | 1 | 1 | AY.36 | 0.000148 |
S | 1104 | V1104del1 | Gta | -ta | 1 | 1 | AY.36 | 0.000148 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | AY.39 | 0.000025 |
S | 1104 | V1104del1 | Gta | -ta | 1 | 1 | AY.39.1 | 0.00004 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.39.1 | 0.00004 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.40 | 0.000964 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | AY.40 | 0.000964 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.41 | 0.000294 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.42 | 0.00004 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | AY.44 | 0.000006 |
S | 1104 | V1104X | GTa | TAa | 1 | 1 | AY.44 | 0.000006 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | AY.46.6 | 0.000072 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.47 | 0.000031 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.5 | 0.000021 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.5.1 | 0.003759 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.52 | 0.000814 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.53 | 0.000288 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.54 | 0.000095 |
S | 1104 | V1104P | GTa | CCa | 1 | 1 | AY.59 | 0.00053 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.60 | 0.000938 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.61 | 0.000105 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.62 | 0.000436 |
S | 1104 | V1104A | gTA | gCG | 1 | 1 | AY.67 | 0.000464 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.7 | 0.000196 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.7.1 | 0.000113 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.70 | 0.000209 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.76 | 0.004831 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.84 | 0.000437 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | AY.9 | 0.000068 |
S | 1104 | V1104V | gtA | gtT | 1 | 1 | AY.9 | 0.000068 |
S | 1104 | V1104F | GtA | TtT | 1 | 1 | AY.9 | 0.000068 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.96 | 0.002075 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AY.97 | 0.001701 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | AZ.2 | 0.000821 |
S | 1104 | V1104E | gTa | gAa | 1 | 1 | B | 0.000128 |
S | 1104 | V1104del | GTA | --- | 1 | 1 | B.1 | 0.000009 |
S | 1104 | V1104E | gTa | gAa | 1 | 1 | B.1 | 0.000009 |
S | 1104 | V1104del1 | gtA | gt- | 1 | 1 | B.1 | 0.000009 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.121 | 0.002427 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.1.157 | 0.000913 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.170 | 0.001247 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.205 | 0.003717 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.1.229 | 0.005747 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.231 | 0.003096 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.241 | 0.00207 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.25 | 0.000569 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.254 | 0.011236 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.318 | 0.000302 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.324 | 0.052632 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.349 | 0.010309 |
S | 1104 | V1104L | Gta | Cta | 1 | 1 | B.1.1.363 | 0.005988 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.369 | 0.000446 |
S | 1104 | V1104V | gtA | gtT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | B.1.1.434 | 0.000349 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.1.44 | 0.00241 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.466 | 0.008696 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.486 | 0.001577 |
S | 1104 | V1104V | gtA | gtT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.526 | 0.003546 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.528 | 0.004808 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1104 | V1104V | gtA | gtT | 1 | 1 | B.1.1.74 | 0.00431 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.1.83 | 0.00271 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.134 | 0.005464 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.147 | 0.000756 |
S | 1104 | V1104L | Gta | Cta | 1 | 1 | B.1.160.14 | 0.002119 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | B.1.160.20 | 0.008929 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.160.22 | 0.006757 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.160.25 | 0.011111 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.160.28 | 0.002924 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.160.29 | 0.004219 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.177 | 0.000013 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.10 | 0.000878 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.15 | 0.000631 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.18 | 0.00116 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.23 | 0.003236 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.31 | 0.011494 |
S | 1104 | V1104L | Gta | Cta | 1 | 1 | B.1.177.35 | 0.000691 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.63 | 0.002703 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.73 | 0.000566 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | B.1.177.73 | 0.000566 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.177.77 | 0.000726 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.178 | 0.02381 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | B.1.182 | 0.007246 |
S | 1104 | V1104del1 | gtA | gt- | 1 | 1 | B.1.2 | 0.000009 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.221 | 0.000071 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.223 | 0.002778 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.234 | 0.000132 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.239 | 0.001221 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | B.1.243 | 0.00007 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.258.11 | 0.000396 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.279 | 0.000514 |
S | 1104 | V1104V | gtA | gtC | 1 | 1 | B.1.289 | 0.00266 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | B.1.311 | 0.000275 |
S | 1104 | V1104E | gTa | gAa | 1 | 1 | B.1.313 | 0.006579 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.329 | 0.000608 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.336 | 0.002439 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.351.2 | 0.000303 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.36.1 | 0.00114 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.36.8 | 0.001 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.389 | 0.001002 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | B.1.396 | 0.000706 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.425 | 0.002994 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.438 | 0.006536 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.459 | 0.004082 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.468 | 0.005714 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.470 | 0.001404 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.497 | 0.000315 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.517 | 0.000427 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.524 | 0.001406 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.538 | 0.008065 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.577 | 0.000687 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.597 | 0.00463 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.600 | 0.005848 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | B.1.609 | 0.000479 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 1104 | V1104A | gTa | gCa | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1104 | V1104del1 | Gta | -ta | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.619 | 0.000871 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.623 | 0.000536 |
S | 1104 | V1104del | GTA | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | B.1.630 | 0.005236 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.630 | 0.005236 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | B.1.637 | 0.000073 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.1.84 | 0.020833 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | B.6 | 0.00091 |
S | 1104 | V1104del | GTA | --- | 1 | 1 | C.37 | 0.000116 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | C.39 | 0.018868 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | D.2 | 0.000075 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | N.3 | 0.005814 |
S | 1104 | V1104del | GTA | --- | 1 | 1 | P.1 | 0.000016 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | P.1.1 | 0.000318 |
S | 1104 | V1104I | Gta | Ata | 1 | 1 | P.1.1 | 0.000318 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | P.1.10 | 0.000269 |
S | 1104 | V1104V | gtA | gtG | 1 | 1 | P.1.15 | 0.000232 |
S | 1104 | V1104del | GTA | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | P.1.7 | 0.000319 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | P.3 | 0.001595 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | P.6 | 0.003145 |
S | 1104 | V1104L | Gta | Tta | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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