CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1101 & Codon = caT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1101H1101HsyncaCcaT62226222124863-24865

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1101H1101HcaCcaT62226222All0.00119
S1101H1101HcaCcaT13911391B.1.1.70.001245
S1101H1101HcaCcaT962962AY.40.001497
S1101H1101HcaCcaT560560B.1.617.20.002109
S1101H1101HcaCcaT417417B.1.20.003672
S1101H1101HcaCcaT274274AY.290.004322
S1101H1101HcaCcaT185185B.1.4290.004353
S1101H1101HcaCcaT155155AY.1030.000962
S1101H1101HcaCcaT138138AY.430.000611
S1101H1101HcaCcaT121121B.10.001108
S1101H1101HcaCcaT104104AY.250.000626
S1101H1101HcaCcaT9393B.1.1770.001225
S1101H1101HcaCcaT8181P.10.001276
S1101H1101HcaCcaT8080B.1.1.280.024899
S1101H1101HcaCcaT7676B.1.10.001379
S1101H1101HcaCcaT7272AY.440.000438
S1101H1101HcaCcaT6767AY.850.02862
S1101H1101HcaCcaT6161B.1.5960.005315
S1101H1101HcaCcaT5252B.1.1.5190.002065
S1101H1101HcaCcaT5252B.1.3510.001546
S1101H1101HcaCcaT4848AY.1210.006495
S1101H1101HcaCcaT4646B.1.1.370.008872
S1101H1101HcaCcaT4343AY.4.50.004622
S1101H1101HcaCcaT4141B.1.2580.002728
S1101H1101HcaCcaT4040AY.260.001132
S1101H1101HcaCcaT3939AY.30.000388
S1101H1101HcaCcaT3636B.1.6370.002631
S1101H1101HcaCcaT3232B.1.5260.000752
S1101H1101HcaCcaT2929AY.330.001937
S1101H1101HcaCcaT2929B.1.1600.000904
S1101H1101HcaCcaT2727AY.540.002574
S1101H1101HcaCcaT2626B.1.177.320.035088
S1101H1101HcaCcaT2525AY.50.000516
S1101H1101HcaCcaT2525B.1.4270.001262
S1101H1101HcaCcaT2525C.350.01935
S1101H1101HcaCcaT2121AY.390.000519
S1101H1101HcaCcaT1919AY.470.000591
S1101H1101HcaCcaT1818AY.99.20.001659
S1101H1101HcaCcaT1717B.1.5250.001924
S1101H1101HcaCcaT1717P.20.003173
S1101H1101HcaCcaT1515AY.340.001454
S1101H1101HcaCcaT1515AY.770.016911
S1101H1101HcaCcaT1515P.1.150.003485
S1101H1101HcaCcaT1313AY.1020.000345
S1101H1101HcaCcaT1313B.1.2210.000923
S1101H1101HcaCcaT1212AY.750.000672
S1101H1101HcaCcaT1212AY.990.012592
S1101H1101HcaCcaT1111AY.1000.000506
S1101H1101HcaCcaT1111AY.1190.000388
S1101H1101HcaCcaT1111AY.200.000428
S1101H1101HcaCcaT1111AY.4.20.000239
S1101H1101HcaCcaT1111AY.450.001339
S1101H1101HcaCcaT1111AY.980.000869
S1101H1101HcaCcaT1111P.1.140.000526
S1101H1101HcaCcaT1010AY.1170.000845
S1101H1101HcaCcaT1010AY.46.30.009337
S1101H1101HcaCcaT1010AZ.20.00821
S1101H1101HcaCcaT1010B.1.1.901
S1101H1101HcaCcaT99AY.46.50.001786
S1101H1101HcaCcaT99B.1.177.210.000688
S1101H1101HcaCcaT99B.1.6210.000797
S1101H1101HcaCcaT88AY.3.10.000682
S1101H1101HcaCcaT88AY.480.003721
S1101H1101HcaCcaT88B.1.258.170.000832
S1101H1101HcaCcaT77AY.29.10.001544
S1101H1101HcaCcaT77AY.39.10.000277
S1101H1101HcaCcaT77AY.60.000288
S1101H1101HcaCcaT77B.1.177.120.001062
S1101H1101HcaCcaT77B.1.2340.000924
S1101H1101HcaCcaT77B.1.360.001021
S1101H1101HcaCcaT77C.370.000812
S1101H1101HcaCcaT66AY.1200.000223
S1101H1101HcaCcaT66AY.360.000889
S1101H1101HcaCcaT66B.1.36.240.037037
S1101H1101HcaCcaT66B.1.5880.00546
S1101H1101HcaCcaT55AY.140.00044
S1101H1101HcaCcaT55AY.460.00052
S1101H1101HcaCcaT55AY.46.60.000361
S1101H1101HcaCcaT55AY.9.20.000184
S1101H1101HcaCcaT55B.1.1460.021186
S1101H1101HcaCcaT55B.1.2060.004078
S1101H1101HcaCcaT55B.1.36.220.006039
S1101H1101HcaCcaT55B.1.5170.002135
S1101H1101HcaCcaT55P.1.120.00242
S1101H1101HcaCcaT55Q.10.000632
S1101H1101HcaCcaT44AY.420.000161
S1101H1101HcaCcaT44AY.70.000784
S1101H1101HcaCcaT44AY.90.00027
S1101H1101HcaCcaT44AY.9.10.000335
S1101H1101HcaCcaT44B0.000511
S1101H1101HcaCcaT44B.1.1.3480.003185
S1101H1101HcaCcaT44B.1.1.3680.012346
S1101H1101HcaCcaT44B.1.3110.001098
S1101H1101HcaCcaT44B.1.4000.001716
S1101H1101HcaCcaT44B.1.5640.001704
S1101H1101HcaCcaT44B.1.5680.004444
S1101H1101HcaCcaT44B.200.093023
S1101H1101HcaCcaT44P.1.170.000647
S1101H1101HcaCcaT44Q.80.00066
S1101H1101HcaCcaT33A.23.10.002113
S1101H1101HcaCcaT33AY.1180.000188
S1101H1101HcaCcaT33AY.5.30.001012
S1101H1101HcaCcaT33AY.610.000314
S1101H1101HcaCcaT33AY.98.10.000145
S1101H1101HcaCcaT33B.1.1.1350.014085
S1101H1101HcaCcaT33B.1.1.1570.00274
S1101H1101HcaCcaT33B.1.1.1890.004539
S1101H1101HcaCcaT33B.1.1.2160.002671
S1101H1101HcaCcaT33B.1.1.2220.000612
S1101H1101HcaCcaT33B.1.1.2410.006211
S1101H1101HcaCcaT33B.1.1.3060.001315
S1101H1101HcaCcaT33B.1.1.330.001263
S1101H1101HcaCcaT33B.1.1430.06383
S1101H1101HcaCcaT33B.1.2430.000209
S1101H1101HcaCcaT33C.360.002732
S1101H1101HcaCcaT33R.10.00027
S1101H1101HcaCcaT22AA.10.014493
S1101H1101HcaCcaT22AY.1060.00067
S1101H1101HcaCcaT22AY.1090.001479
S1101H1101HcaCcaT22AY.130.000322
S1101H1101HcaCcaT22AY.230.000139
S1101H1101HcaCcaT22AY.4.2.10.000298
S1101H1101HcaCcaT22AY.4.40.000818
S1101H1101HcaCcaT22AY.410.000588
S1101H1101HcaCcaT22AY.5.40.000553
S1101H1101HcaCcaT22AY.630.000774
S1101H1101HcaCcaT22AY.640.00119
S1101H1101HcaCcaT22AY.740.000231
S1101H1101HcaCcaT22AY.880.001768
S1101H1101HcaCcaT22AY.920.000575
S1101H1101HcaCcaT22B.1.1.2140.000111
S1101H1101HcaCcaT22B.1.1.250.001137
S1101H1101HcaCcaT22B.1.1.2690.002706
S1101H1101HcaCcaT22B.1.1.3110.000716
S1101H1101HcaCcaT22B.1.1.3120.003824
S1101H1101HcaCcaT22B.1.1.3180.000604
S1101H1101HcaCcaT22B.1.1.3260.003521
S1101H1101HcaCcaT22B.1.1.3720.001377
S1101H1101HcaCcaT22B.1.1180.013423
S1101H1101HcaCcaT22B.1.177.410.005
S1101H1101HcaCcaT22B.1.177.730.001133
S1101H1101HcaCcaT22B.1.177.790.004684
S1101H1101HcaCcaT22B.1.177.810.000379
S1101H1101HcaCcaT22B.1.2100.004264
S1101H1101HcaCcaT22B.1.2320.001075
S1101H1101HcaCcaT22B.1.2400.000431
S1101H1101HcaCcaT22B.1.30.005236
S1101H1101HcaCcaT22B.1.3490.00143
S1101H1101HcaCcaT22B.1.36.210.00432
S1101H1101HcaCcaT22B.1.36.370.005556
S1101H1101HcaCcaT22B.1.36.80.002
S1101H1101HcaCcaT22B.1.3690.00057
S1101H1101HcaCcaT22B.1.3980.005952
S1101H1101HcaCcaT22B.1.4240.016129
S1101H1101HcaCcaT22B.1.440.016667
S1101H1101HcaCcaT22B.1.4970.00063
S1101H1101HcaCcaT22B.1.5820.000981
S1101H1101HcaCcaT22B.1.5950.000522
S1101H1101HcaCcaT22B.40.004415
S1101H1101HcaCcaT22D.20.00015
S1101H1101HcaCcaT22P.1.160.000748
S1101H1101HcaCcaT22Q.20.001227
S1101H1101HcaCcaT110.055556
S1101H1101HcaCcaT11A.2.5.20.001572
S1101H1101HcaCcaT11AE.80.000489
S1101H1101HcaCcaT11AY.10.000396
S1101H1101HcaCcaT11AY.1140.000231
S1101H1101HcaCcaT11AY.1160.000287
S1101H1101HcaCcaT11AY.120.000316
S1101H1101HcaCcaT11AY.16.10.00047
S1101H1101HcaCcaT11AY.270.000065
S1101H1101HcaCcaT11AY.300.000396
S1101H1101HcaCcaT11AY.320.000532
S1101H1101HcaCcaT11AY.34.10.00051
S1101H1101HcaCcaT11AY.350.000233
S1101H1101HcaCcaT11AY.4.30.000842
S1101H1101HcaCcaT11AY.46.40.000165
S1101H1101HcaCcaT11AY.620.000436
S1101H1101HcaCcaT11AY.690.000187
S1101H1101HcaCcaT11AY.7.10.000113
S1101H1101HcaCcaT11AY.710.000475
S1101H1101HcaCcaT11AY.75.10.00018
S1101H1101HcaCcaT11AY.780.001541
S1101H1101HcaCcaT11AY.810.001992
S1101H1101HcaCcaT11AZ.10.000867
S1101H1101HcaCcaT11B.1.1.10.000327
S1101H1101HcaCcaT11B.1.1.120.007463
S1101H1101HcaCcaT11B.1.1.1210.002427
S1101H1101HcaCcaT11B.1.1.1760.000439
S1101H1101HcaCcaT11B.1.1.1980.001468
S1101H1101HcaCcaT11B.1.1.2400.004695
S1101H1101HcaCcaT11B.1.1.2430.004082
S1101H1101HcaCcaT11B.1.1.3530.020833
S1101H1101HcaCcaT11B.1.1.3890.006061
S1101H1101HcaCcaT11B.1.1.4220.045455
S1101H1101HcaCcaT11B.1.1.4340.000349
S1101H1101HcaCcaT11B.1.1.4480.002033
S1101H1101HcaCcaT11B.1.1.470.005348
S1101H1101HcaCcaT11B.1.1.50.008333
S1101H1101HcaCcaT11B.1.1.5000.02
S1101H1101HcaCcaT11B.1.1.5170.006803
S1101H1101HcaCcaT11B.1.1.5230.001563
S1101H1101HcaCcaT11B.1.1.5250.005464
S1101H1101HcaCcaT11B.1.1.570.011494
S1101H1101HcaCcaT11B.1.1.700.000341
S1101H1101HcaCcaT11B.1.1.710.006061
S1101H1101HcaCcaT11B.1.1.880.071429
S1101H1101HcaCcaT11B.1.1.990.02381
S1101H1101HcaCcaT11B.1.110.30.000718
S1101H1101HcaCcaT11B.1.1110.001175
S1101H1101HcaCcaT11B.1.1280.000635
S1101H1101HcaCcaT11B.1.1470.000756
S1101H1101HcaCcaT11B.1.160.80.001289
S1101H1101HcaCcaT11B.1.1680.027027
S1101H1101HcaCcaT11B.1.177.40.000211
S1101H1101HcaCcaT11B.1.177.510.004566
S1101H1101HcaCcaT11B.1.177.570.000281
S1101H1101HcaCcaT11B.1.177.650.000665
S1101H1101HcaCcaT11B.1.177.720.00339
S1101H1101HcaCcaT11B.1.177.860.000183
S1101H1101HcaCcaT11B.1.1790.003759
S1101H1101HcaCcaT11B.1.1800.05
S1101H1101HcaCcaT11B.1.2370.004975
S1101H1101HcaCcaT11B.1.258.40.003448
S1101H1101HcaCcaT11B.1.2790.000514
S1101H1101HcaCcaT11B.1.3020.013333
S1101H1101HcaCcaT11B.1.3240.001605
S1101H1101HcaCcaT11B.1.3290.000608
S1101H1101HcaCcaT11B.1.36.170.000494
S1101H1101HcaCcaT11B.1.36.190.009259
S1101H1101HcaCcaT11B.1.36.290.000517
S1101H1101HcaCcaT11B.1.36.380.001642
S1101H1101HcaCcaT11B.1.36.390.002217
S1101H1101HcaCcaT11B.1.416.10.001563
S1101H1101HcaCcaT11B.1.4250.002994
S1101H1101HcaCcaT11B.1.4360.001029
S1101H1101HcaCcaT11B.1.4410.009615
S1101H1101HcaCcaT11B.1.4560.003268
S1101H1101HcaCcaT11B.1.466.20.000391
S1101H1101HcaCcaT11B.1.4730.019231
S1101H1101HcaCcaT11B.1.5040.03125
S1101H1101HcaCcaT11B.1.5300.007143
S1101H1101HcaCcaT11B.1.5400.009709
S1101H1101HcaCcaT11B.1.5610.000397
S1101H1101HcaCcaT11B.1.6070.052632
S1101H1101HcaCcaT11B.1.6090.000479
S1101H1101HcaCcaT11B.1.621.10.000506
S1101H1101HcaCcaT11B.1.6280.000352
S1101H1101HcaCcaT11B.30.000831
S1101H1101HcaCcaT11B.310.003731
S1101H1101HcaCcaT11B.400.000364
S1101H1101HcaCcaT11B.6.30.026316
S1101H1101HcaCcaT11C.230.005814
S1101H1101HcaCcaT11L.30.003546
S1101H1101HcaCcaT11P.1.130.000898

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.