CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1101

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	1101	H1101Y		nonsyn	Cac	Tac	7712	7694	0.997666	24863-24865
S	1101	H1101Y		nonsyn	CaC	TaT	7712	18	0.00233402	24863-24865
S	1101	H1101H		syn	caC	caT	6222	6222	1	24863-24865
S	1101	H1101D		nonsyn	Cac	Gac	2620	2618	0.999237	24863-24865
S	1101	H1101D		nonsyn	CaC	GaT	2620	2	0.000763359	24863-24865
S	1101	H1101Q		nonsyn	caC	caA	481	407	0.846154	24863-24865
S	1101	H1101Q		nonsyn	caC	caG	481	74	0.153846	24863-24865
S	1101	H1101N		nonsyn	Cac	Aac	76	76	1	24863-24865
S	1101	H1101R		nonsyn	cAc	cGc	68	68	1	24863-24865
S	1101	H1101del		del	CAC	---	19	19	1	24863-24865
S	1101	H1101L		nonsyn	cAc	cTc	19	16	0.842105	24863-24865
S	1101	H1101L		nonsyn	cAC	cTA	19	2	0.105263	24863-24865
S	1101	H1101L		nonsyn	cAC	cTT	19	1	0.0526316	24863-24865
S	1101	H1101P		nonsyn	cAc	cCc	7	7	1	24863-24865
S	1101	H1101del1		del	Cac	-ac	7	7	1	24863-24865
S	1101	H1101I		nonsyn	CAc	ATc	4	2	0.5	24863-24865
S	1101	H1101I		nonsyn	CAC	ATA	4	2	0.5	24863-24865
S	1101	H1101K		nonsyn	CaC	AaA	2	2	1	24863-24865
S	1101	H1101F		nonsyn	CAc	TTc	2	1	0.5	24863-24865
S	1101	H1101F		nonsyn	CAC	TTT	2	1	0.5	24863-24865
S	1101	H1101S		nonsyn	CAc	AGc	1	1	1	24863-24865

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	1101	H1101Y	Cac	Tac	7694	7712	All	0.001472
S	1101	H1101Y	CaC	TaT	18	7712	All	0.000003
S	1101	H1101H	caC	caT	6222	6222	All	0.00119
S	1101	H1101D	Cac	Gac	2618	2620	All	0.000501
S	1101	H1101D	CaC	GaT	2	2620	All	0
S	1101	H1101D	Cac	Gac	2467	2469	B.1.617.1	0.318158
S	1101	H1101D	CaC	GaT	2	2469	B.1.617.1	0.000258
S	1101	H1101Y	Cac	Tac	2106	2106	AY.107	0.981361
S	1101	H1101H	caC	caT	1391	1391	B.1.1.7	0.001245
S	1101	H1101H	caC	caT	962	962	AY.4	0.001497
S	1101	H1101Y	Cac	Tac	752	753	AY.4	0.00117
S	1101	H1101Y	CaC	TaT	1	753	AY.4	0.000002
S	1101	H1101Y	Cac	Tac	617	620	P.3	0.984051
S	1101	H1101Y	CaC	TaT	3	620	P.3	0.004785
S	1101	H1101Y	Cac	Tac	615	615	B.1.1.7	0.000551
S	1101	H1101H	caC	caT	560	560	B.1.617.2	0.002109
S	1101	H1101Y	Cac	Tac	534	534	AY.44	0.00325
S	1101	H1101Q	caC	caA	407	481	All	0.000078
S	1101	H1101Q	caC	caG	74	481	All	0.000014
S	1101	H1101H	caC	caT	417	417	B.1.2	0.003672
S	1101	H1101Y	Cac	Tac	341	341	B.1.617.2	0.001284
S	1101	H1101H	caC	caT	274	274	AY.29	0.004322
S	1101	H1101Y	Cac	Tac	191	191	AY.43	0.000846
S	1101	H1101H	caC	caT	185	185	B.1.429	0.004353
S	1101	H1101H	caC	caT	155	155	AY.103	0.000962
S	1101	H1101Q	caC	caA	136	151	B.1.1.7	0.000122
S	1101	H1101Q	caC	caG	15	151	B.1.1.7	0.000013
S	1101	H1101Y	Cac	Tac	147	147	B.1.617.1	0.018958
S	1101	H1101H	caC	caT	138	138	AY.43	0.000611
S	1101	H1101Y	Cac	Tac	137	137	AY.74	0.015844
S	1101	H1101H	caC	caT	121	121	B.1	0.001108
S	1101	H1101Y	Cac	Tac	120	120	AY.103	0.000745
S	1101	H1101Y	Cac	Tac	119	119	AY.102	0.003155
S	1101	H1101H	caC	caT	104	104	AY.25	0.000626
S	1101	H1101Y	Cac	Tac	96	96	B.1.427	0.004848
S	1101	H1101H	caC	caT	93	93	B.1.177	0.001225
S	1101	H1101Y	Cac	Tac	87	87	B.1.258	0.00579
S	1101	H1101Y	Cac	Tac	85	85	AY.40	0.081967
S	1101	H1101Y	Cac	Tac	85	85	B.1.2	0.000748
S	1101	H1101H	caC	caT	81	81	P.1	0.001276
S	1101	H1101H	caC	caT	80	80	B.1.1.28	0.024899
S	1101	H1101Y	Cac	Tac	77	77	AY.25	0.000463
S	1101	H1101N	Cac	Aac	76	76	All	0.000015
S	1101	H1101H	caC	caT	76	76	B.1.1	0.001379
S	1101	H1101H	caC	caT	72	72	AY.44	0.000438
S	1101	H1101R	cAc	cGc	68	68	All	0.000013
S	1101	H1101Y	Cac	Tac	68	68	AY.4.3	0.057239
S	1101	H1101H	caC	caT	67	67	AY.85	0.02862
S	1101	H1101Y	Cac	Tac	66	66	AY.3	0.000656
S	1101	H1101Y	Cac	Tac	54	65	P.1	0.000851
S	1101	H1101Y	CaC	TaT	11	65	P.1	0.000173
S	1101	H1101H	caC	caT	61	61	B.1.596	0.005315
S	1101	H1101D	Cac	Gac	59	59	B.1	0.00054
S	1101	H1101Y	Cac	Tac	57	57	AY.10	0.030207
S	1101	H1101Y	Cac	Tac	57	57	AY.120	0.002119
S	1101	H1101Q	caC	caA	54	54	B.1.526	0.001269
S	1101	H1101H	caC	caT	52	52	B.1.1.519	0.002065
S	1101	H1101H	caC	caT	52	52	B.1.351	0.001546
S	1101	H1101H	caC	caT	48	48	AY.121	0.006495
S	1101	H1101H	caC	caT	46	46	B.1.1.37	0.008872
S	1101	H1101Y	Cac	Tac	45	45	AY.24	0.019397
S	1101	H1101Y	Cac	Tac	45	45	B.1	0.000412
S	1101	H1101N	Cac	Aac	44	44	AY.4	0.000068
S	1101	H1101H	caC	caT	43	43	AY.4.5	0.004622
S	1101	H1101Y	Cac	Tac	42	42	AY.33	0.002805
S	1101	H1101Y	Cac	Tac	42	42	AY.9.1	0.003516
S	1101	H1101Y	Cac	Tac	41	41	B.1.1	0.000744
S	1101	H1101H	caC	caT	41	41	B.1.258	0.002728
S	1101	H1101H	caC	caT	40	40	AY.26	0.001132
S	1101	H1101H	caC	caT	39	39	AY.3	0.000388
S	1101	H1101Y	Cac	Tac	39	39	B.1.526	0.000917
S	1101	H1101Y	Cac	Tac	38	38	B.1.177	0.0005
S	1101	H1101Y	Cac	Tac	37	37	B.1.243	0.002575
S	1101	H1101H	caC	caT	36	36	B.1.637	0.002631
S	1101	H1101Y	Cac	Tac	35	35	AY.118	0.002193
S	1101	H1101Q	caC	caA	34	34	AY.23	0.002371
S	1101	H1101Y	Cac	Tac	34	34	AY.5	0.000702
S	1101	H1101Y	Cac	Tac	32	32	B.1.1.519	0.001271
S	1101	H1101H	caC	caT	32	32	B.1.526	0.000752
S	1101	H1101Y	Cac	Tac	31	31	AY.111	0.005678
S	1101	H1101H	caC	caT	29	29	AY.33	0.001937
S	1101	H1101H	caC	caT	29	29	B.1.160	0.000904
S	1101	H1101H	caC	caT	27	27	AY.54	0.002574
S	1101	H1101Q	caC	caA	20	26	AY.103	0.000124
S	1101	H1101Q	caC	caG	6	26	AY.103	0.000037
S	1101	H1101Y	Cac	Tac	26	26	AY.14	0.002288
S	1101	H1101Y	Cac	Tac	26	26	AY.39	0.000642
S	1101	H1101H	caC	caT	26	26	B.1.177.32	0.035088
S	1101	H1101H	caC	caT	25	25	AY.5	0.000516
S	1101	H1101H	caC	caT	25	25	B.1.427	0.001262
S	1101	H1101Q	caC	caA	25	25	C.1.2	0.106383
S	1101	H1101H	caC	caT	25	25	C.35	0.01935
S	1101	H1101Y	Cac	Tac	24	24	AY.119	0.000847
S	1101	H1101Y	Cac	Tac	24	24	B.1.429	0.000565
S	1101	H1101H	caC	caT	21	21	AY.39	0.000519
S	1101	H1101Y	Cac	Tac	20	20	AY.20	0.000777
S	1101	H1101Y	Cac	Tac	20	20	P.1.14	0.000956
S	1101	H1101del	CAC	---	19	19	All	0.000004
S	1101	H1101L	cAc	cTc	16	19	All	0.000003
S	1101	H1101L	cAC	cTA	2	19	All	0
S	1101	H1101L	cAC	cTT	1	19	All	0
S	1101	H1101H	caC	caT	19	19	AY.47	0.000591
S	1101	H1101H	caC	caT	18	18	AY.99.2	0.001659
S	1101	H1101Q	caC	caA	17	17	AY.39	0.00042
S	1101	H1101Y	Cac	Tac	17	17	B.1.177.62	0.020262
S	1101	H1101Y	Cac	Tac	17	17	B.1.177.77	0.012346
S	1101	H1101Q	caC	caA	13	17	B.1.2	0.000114
S	1101	H1101Q	caC	caG	4	17	B.1.2	0.000035
S	1101	H1101H	caC	caT	17	17	B.1.525	0.001924
S	1101	H1101H	caC	caT	17	17	P.2	0.003173
S	1101	H1101Y	Cac	Tac	16	16	AY.121	0.002165
S	1101	H1101Y	Cac	Tac	16	16	AY.23	0.001116
S	1101	H1101Y	Cac	Tac	16	16	B.1.1.423	1
S	1101	H1101Y	Cac	Tac	16	16	B.1.565	0.012966
S	1101	H1101H	caC	caT	15	15	AY.34	0.001454
S	1101	H1101H	caC	caT	15	15	AY.77	0.016911
S	1101	H1101Y	Cac	Tac	15	15	B.1.1.27	0.084746
S	1101	H1101H	caC	caT	15	15	P.1.15	0.003485
S	1101	H1101Y	Cac	Tac	14	14	AY.91	0.010226
S	1101	H1101D	Cac	Gac	14	14	B.1.1.7	0.000013
S	1101	H1101H	caC	caT	13	13	AY.102	0.000345
S	1101	H1101Y	Cac	Tac	13	13	AY.4.2	0.000282
S	1101	H1101Y	Cac	Tac	13	13	AY.46.2	0.008259
S	1101	H1101H	caC	caT	13	13	B.1.221	0.000923
S	1101	H1101Q	caC	caG	12	13	P.1.14	0.000574
S	1101	H1101Q	caC	caA	1	13	P.1.14	0.000048
S	1101	H1101H	caC	caT	12	12	AY.75	0.000672
S	1101	H1101H	caC	caT	12	12	AY.99	0.012592
S	1101	H1101Y	Cac	Tac	12	12	B.1.160	0.000374
S	1101	H1101Y	Cac	Tac	12	12	B.1.628	0.004228
S	1101	H1101H	caC	caT	11	11	AY.100	0.000506
S	1101	H1101Y	Cac	Tac	11	11	AY.117	0.00093
S	1101	H1101H	caC	caT	11	11	AY.119	0.000388
S	1101	H1101H	caC	caT	11	11	AY.20	0.000428
S	1101	H1101H	caC	caT	11	11	AY.4.2	0.000239
S	1101	H1101H	caC	caT	11	11	AY.45	0.001339
S	1101	H1101Y	Cac	Tac	11	11	AY.47	0.000342
S	1101	H1101D	Cac	Gac	11	11	AY.75	0.000616
S	1101	H1101H	caC	caT	11	11	AY.98	0.000869
S	1101	H1101Q	caC	caA	10	11	B.1.214.2	0.005995
S	1101	H1101Q	caC	caG	1	11	B.1.214.2	0.0006
S	1101	H1101Y	Cac	Tac	11	11	B.1.240	0.002371
S	1101	H1101H	caC	caT	11	11	P.1.14	0.000526
S	1101	H1101H	caC	caT	10	10	AY.117	0.000845
S	1101	H1101Q	caC	caA	6	10	AY.3	0.00006
S	1101	H1101Q	caC	caG	4	10	AY.3	0.00004
S	1101	H1101Q	caC	caA	6	10	AY.4	0.000009
S	1101	H1101Q	caC	caG	4	10	AY.4	0.000006
S	1101	H1101H	caC	caT	10	10	AY.46.3	0.009337
S	1101	H1101Y	Cac	Tac	10	10	AY.7.2	0.005593
S	1101	H1101H	caC	caT	10	10	AZ.2	0.00821
S	1101	H1101H	caC	caT	10	10	B.1.1.90	1
S	1101	H1101D	Cac	Gac	10	10	B.1.617.2	0.000038
S	1101	H1101Y	Cac	Tac	10	10	Q.1	0.001263
S	1101	H1101R	cAc	cGc	9	9	AY.4	0.000014
S	1101	H1101Y	Cac	Tac	9	9	AY.46	0.000937
S	1101	H1101H	caC	caT	9	9	AY.46.5	0.001786
S	1101	H1101Y	Cac	Tac	9	9	AY.46.6	0.00065
S	1101	H1101R	cAc	cGc	9	9	B.1.1.7	0.000008
S	1101	H1101H	caC	caT	9	9	B.1.177.21	0.000688
S	1101	H1101Y	Cac	Tac	9	9	B.1.621	0.000797
S	1101	H1101H	caC	caT	9	9	B.1.621	0.000797
S	1101	H1101H	caC	caT	8	8	AY.3.1	0.000682
S	1101	H1101H	caC	caT	8	8	AY.48	0.003721
S	1101	H1101Y	Cac	Tac	8	8	AY.92	0.002298
S	1101	H1101Y	Cac	Tac	8	8	B.1.1.70	0.002729
S	1101	H1101D	Cac	Gac	8	8	B.1.214	0.029304
S	1101	H1101H	caC	caT	8	8	B.1.258.17	0.000832
S	1101	H1101R	cAc	cGc	8	8	B.1.429	0.000188
S	1101	H1101Y	Cac	Tac	8	8	B.1.609	0.003835
S	1101	H1101Y	Cac	Tac	8	8	R.1	0.00072
S	1101	H1101P	cAc	cCc	7	7	All	0.000001
S	1101	H1101del1	Cac	-ac	7	7	All	0.000001
S	1101	H1101D	Cac	Gac	7	7	AY.103	0.000043
S	1101	H1101Q	caC	caA	5	7	AY.25	0.00003
S	1101	H1101Q	caC	caG	2	7	AY.25	0.000012
S	1101	H1101H	caC	caT	7	7	AY.29.1	0.001544
S	1101	H1101H	caC	caT	7	7	AY.39.1	0.000277
S	1101	H1101Q	caC	caA	7	7	AY.44	0.000043
S	1101	H1101H	caC	caT	7	7	AY.6	0.000288
S	1101	H1101R	cAc	cGc	7	7	AY.7	0.001372
S	1101	H1101Y	Cac	Tac	7	7	AY.75	0.000392
S	1101	H1101Y	Cac	Tac	7	7	AY.9.2	0.000257
S	1101	H1101D	Cac	Gac	7	7	B.1.1	0.000127
S	1101	H1101Q	caC	caA	7	7	B.1.1.28	0.002179
S	1101	H1101H	caC	caT	7	7	B.1.177.12	0.001062
S	1101	H1101N	Cac	Aac	7	7	B.1.177.86	0.001284
S	1101	H1101H	caC	caT	7	7	B.1.234	0.000924
S	1101	H1101H	caC	caT	7	7	B.1.36	0.001021
S	1101	H1101H	caC	caT	7	7	C.37	0.000812
S	1101	H1101Y	Cac	Tac	7	7	P.5	0.09589
S	1101	H1101L	cAc	cTc	3	6		0.166667
S	1101	H1101L	cAC	cTA	2	6		0.111111
S	1101	H1101L	cAC	cTT	1	6		0.055556
S	1101	H1101Y	Cac	Tac	6	6	AY.100	0.000276
S	1101	H1101H	caC	caT	6	6	AY.120	0.000223
S	1101	H1101Q	caC	caG	6	6	AY.20	0.000233
S	1101	H1101Y	Cac	Tac	6	6	AY.3.1	0.000512
S	1101	H1101L	cAc	cTc	6	6	AY.33	0.000401
S	1101	H1101H	caC	caT	6	6	AY.36	0.000889
S	1101	H1101Y	Cac	Tac	6	6	AY.42	0.000241
S	1101	H1101Y	Cac	Tac	6	6	AY.45	0.00073
S	1101	H1101Y	Cac	Tac	6	6	AY.99.2	0.000553
S	1101	H1101N	Cac	Aac	6	6	B.1.1.7	0.000005
S	1101	H1101Y	Cac	Tac	6	6	B.1.177.4	0.001266
S	1101	H1101Y	Cac	Tac	6	6	B.1.351	0.000178
S	1101	H1101H	caC	caT	6	6	B.1.36.24	0.037037
S	1101	H1101Y	Cac	Tac	6	6	B.1.576	0.00544
S	1101	H1101H	caC	caT	6	6	B.1.588	0.00546
S	1101	H1101Q	caC	caA	5	6	B.1.617.2	0.000019
S	1101	H1101Q	caC	caG	1	6	B.1.617.2	0.000004
S	1101	H1101H	caC	caT	5	5	AY.14	0.00044
S	1101	H1101Y	Cac	Tac	5	5	AY.29	0.000079
S	1101	H1101Q	caC	caG	5	5	AY.33	0.000334
S	1101	H1101Y	Cac	Tac	5	5	AY.36	0.000741
S	1101	H1101H	caC	caT	5	5	AY.46	0.00052
S	1101	H1101H	caC	caT	5	5	AY.46.6	0.000361
S	1101	H1101H	caC	caT	5	5	AY.9.2	0.000184
S	1101	H1101Q	caC	caA	5	5	B.1	0.000046
S	1101	H1101Y	Cac	Tac	5	5	B.1.1.306	0.002192
S	1101	H1101Y	Cac	Tac	5	5	B.1.1.434	0.001743
S	1101	H1101H	caC	caT	5	5	B.1.146	0.021186
S	1101	H1101H	caC	caT	5	5	B.1.206	0.004078
S	1101	H1101Y	Cac	Tac	5	5	B.1.258.17	0.00052
S	1101	H1101H	caC	caT	5	5	B.1.36.22	0.006039
S	1101	H1101Y	Cac	Tac	5	5	B.1.428	0.005102
S	1101	H1101H	caC	caT	5	5	B.1.517	0.002135
S	1101	H1101del1	Cac	-ac	5	5	B.1.617.1	0.000645
S	1101	H1101Y	Cac	Tac	5	5	C.37	0.00058
S	1101	H1101H	caC	caT	5	5	P.1.12	0.00242
S	1101	H1101H	caC	caT	5	5	Q.1	0.000632
S	1101	H1101Y	Cac	Tac	5	5	Q.4	0.002274
S	1101	H1101Y	CaC	TaT	3	4		0.166667
S	1101	H1101I	CAc	ATc	2	4		0.111111
S	1101	H1101I	CAC	ATA	2	4		0.111111
S	1101	H1101Y	Cac	Tac	1	4		0.055556
S	1101	H1101Y	Cac	Tac	4	4	A.23.1	0.002817
S	1101	H1101I	CAC	ATA	2	4	All	0
S	1101	H1101I	CAc	ATc	2	4	All	0
S	1101	H1101Y	Cac	Tac	4	4	AY.106	0.00134
S	1101	H1101Q	caC	caA	4	4	AY.120	0.000149
S	1101	H1101R	cAc	cGc	4	4	AY.25	0.000024
S	1101	H1101H	caC	caT	4	4	AY.42	0.000161
S	1101	H1101Y	Cac	Tac	4	4	AY.5.3	0.00135
S	1101	H1101Y	Cac	Tac	4	4	AY.5.4	0.001107
S	1101	H1101Y	Cac	Tac	4	4	AY.54	0.000381
S	1101	H1101H	caC	caT	4	4	AY.7	0.000784
S	1101	H1101Y	Cac	Tac	4	4	AY.84	0.00175
S	1101	H1101H	caC	caT	4	4	AY.9	0.00027
S	1101	H1101H	caC	caT	4	4	AY.9.1	0.000335
S	1101	H1101H	caC	caT	4	4	B	0.000511
S	1101	H1101Y	Cac	Tac	4	4	B.1.1.265	0.012618
S	1101	H1101H	caC	caT	4	4	B.1.1.348	0.003185
S	1101	H1101H	caC	caT	4	4	B.1.1.368	0.012346
S	1101	H1101Y	Cac	Tac	4	4	B.1.177.81	0.000757
S	1101	H1101H	caC	caT	4	4	B.1.311	0.001098
S	1101	H1101Y	Cac	Tac	4	4	B.1.357	0.038095
S	1101	H1101H	caC	caT	4	4	B.1.400	0.001716
S	1101	H1101H	caC	caT	4	4	B.1.564	0.001704
S	1101	H1101H	caC	caT	4	4	B.1.568	0.004444
S	1101	H1101Y	Cac	Tac	4	4	B.1.637	0.000292
S	1101	H1101H	caC	caT	4	4	B.20	0.093023
S	1101	H1101Y	Cac	Tac	4	4	P.1.17	0.000647
S	1101	H1101H	caC	caT	4	4	P.1.17	0.000647
S	1101	H1101H	caC	caT	4	4	Q.8	0.00066
S	1101	H1101N	Cac	Aac	3	3		0.166667
S	1101	H1101Y	Cac	Tac	3	3	A.2.5	0.001497
S	1101	H1101H	caC	caT	3	3	A.23.1	0.002113
S	1101	H1101Y	Cac	Tac	3	3	AD.2	0.000657
S	1101	H1101R	cAc	cGc	3	3	AY.103	0.000019
S	1101	H1101H	caC	caT	3	3	AY.118	0.000188
S	1101	H1101Q	caC	caA	3	3	AY.29	0.000047
S	1101	H1101L	cAc	cTc	3	3	AY.4	0.000005
S	1101	H1101D	Cac	Gac	3	3	AY.4	0.000005
S	1101	H1101del	CAC	---	3	3	AY.43	0.000013
S	1101	H1101Q	caC	caG	2	3	AY.43	0.000009
S	1101	H1101Q	caC	caA	1	3	AY.43	0.000004
S	1101	H1101H	caC	caT	3	3	AY.5.3	0.001012
S	1101	H1101H	caC	caT	3	3	AY.61	0.000314
S	1101	H1101Y	Cac	Tac	3	3	AY.86	0.00249
S	1101	H1101Y	Cac	Tac	3	3	AY.9	0.000203
S	1101	H1101H	caC	caT	3	3	AY.98.1	0.000145
S	1101	H1101Y	Cac	Tac	3	3	AY.98.1	0.000145
S	1101	H1101Y	Cac	Tac	3	3	AY.99	0.003148
S	1101	H1101N	Cac	Aac	3	3	B.1	0.000027
S	1101	H1101Q	caC	caA	3	3	B.1.1	0.000054
S	1101	H1101H	caC	caT	3	3	B.1.1.135	0.014085
S	1101	H1101H	caC	caT	3	3	B.1.1.157	0.00274
S	1101	H1101Y	Cac	Tac	3	3	B.1.1.165	0.046154
S	1101	H1101H	caC	caT	3	3	B.1.1.189	0.004539
S	1101	H1101H	caC	caT	3	3	B.1.1.216	0.002671
S	1101	H1101H	caC	caT	3	3	B.1.1.222	0.000612
S	1101	H1101H	caC	caT	3	3	B.1.1.241	0.006211
S	1101	H1101Y	Cac	Tac	3	3	B.1.1.291	0.002227
S	1101	H1101H	caC	caT	3	3	B.1.1.306	0.001315
S	1101	H1101Y	Cac	Tac	3	3	B.1.1.317	0.001235
S	1101	H1101H	caC	caT	3	3	B.1.1.33	0.001263
S	1101	H1101R	cAc	cGc	3	3	B.1.1.39	0.001529
S	1101	H1101Y	Cac	Tac	3	3	B.1.1.63	0.001157
S	1101	H1101del	CAC	---	3	3	B.1.1.7	0.000003
S	1101	H1101H	caC	caT	3	3	B.1.143	0.06383
S	1101	H1101Y	Cac	Tac	3	3	B.1.179	0.011278
S	1101	H1101Y	Cac	Tac	3	3	B.1.221	0.000213
S	1101	H1101Y	Cac	Tac	3	3	B.1.234	0.000396
S	1101	H1101H	caC	caT	3	3	B.1.243	0.000209
S	1101	H1101Y	Cac	Tac	3	3	B.1.311	0.000824
S	1101	H1101Y	Cac	Tac	3	3	B.1.349	0.002144
S	1101	H1101Y	Cac	Tac	3	3	B.1.36.17	0.001482
S	1101	H1101Y	Cac	Tac	3	3	B.1.36.29	0.001552
S	1101	H1101Y	Cac	Tac	3	3	B.1.428.3	0.038462
S	1101	H1101Y	Cac	Tac	3	3	B.1.521	0.014925
S	1101	H1101Y	Cac	Tac	3	3	B.1.525	0.000339
S	1101	H1101Y	Cac	Tac	3	3	B.1.561	0.001191
S	1101	H1101Q	caC	caA	3	3	B.1.575	0.00091
S	1101	H1101R	cAc	cGc	3	3	B.1.617.2	0.000011
S	1101	H1101N	Cac	Aac	3	3	B.1.617.2	0.000011
S	1101	H1101H	caC	caT	3	3	C.36	0.002732
S	1101	H1101Q	caC	caA	3	3	C.36.3.1	0.008152
S	1101	H1101Q	caC	caA	3	3	C.37	0.000348
S	1101	H1101Q	caC	caA	3	3	Q.8	0.000495
S	1101	H1101Y	Cac	Tac	3	3	Q.8	0.000495
S	1101	H1101H	caC	caT	3	3	R.1	0.00027
S	1101	H1101Q	caC	caA	2	2		0.111111
S	1101	H1101K	CaC	AaA	2	2		0.111111
S	1101	H1101F	CAC	TTT	1	2		0.055556
S	1101	H1101F	CAc	TTc	1	2		0.055556
S	1101	H1101Y	Cac	Tac	2	2	A.21	0.00554
S	1101	H1101H	caC	caT	2	2	AA.1	0.014493
S	1101	H1101K	CaC	AaA	2	2	All	0
S	1101	H1101F	CAC	TTT	1	2	All	0
S	1101	H1101F	CAc	TTc	1	2	All	0
S	1101	H1101H	caC	caT	2	2	AY.106	0.00067
S	1101	H1101H	caC	caT	2	2	AY.109	0.001479
S	1101	H1101Y	Cac	Tac	2	2	AY.109	0.001479
S	1101	H1101Y	Cac	Tac	2	2	AY.110	0.000225
S	1101	H1101Y	Cac	Tac	2	2	AY.113	0.000285
S	1101	H1101del	CAC	---	2	2	AY.120	0.000074
S	1101	H1101Y	Cac	Tac	2	2	AY.120.1	0.000642
S	1101	H1101Q	caC	caA	2	2	AY.13	0.000322
S	1101	H1101H	caC	caT	2	2	AY.13	0.000322
S	1101	H1101Q	caC	caG	2	2	AY.14	0.000176
S	1101	H1101D	Cac	Gac	2	2	AY.23	0.000139
S	1101	H1101H	caC	caT	2	2	AY.23	0.000139
S	1101	H1101Y	Cac	Tac	2	2	AY.26	0.000057
S	1101	H1101Y	Cac	Tac	2	2	AY.30	0.000791
S	1101	H1101Y	Cac	Tac	2	2	AY.32	0.001065
S	1101	H1101Y	Cac	Tac	2	2	AY.34.1	0.00102
S	1101	H1101Y	Cac	Tac	2	2	AY.39.1	0.000079
S	1101	H1101del	CAC	---	2	2	AY.4	0.000003
S	1101	H1101H	caC	caT	2	2	AY.4.2.1	0.000298
S	1101	H1101H	caC	caT	2	2	AY.4.4	0.000818
S	1101	H1101D	Cac	Gac	2	2	AY.40	0.001929
S	1101	H1101H	caC	caT	2	2	AY.41	0.000588
S	1101	H1101R	cAc	cGc	2	2	AY.44	0.000012
S	1101	H1101D	Cac	Gac	2	2	AY.44	0.000012
S	1101	H1101Q	caC	caA	2	2	AY.45	0.000243
S	1101	H1101D	Cac	Gac	2	2	AY.5	0.000041
S	1101	H1101Q	caC	caA	2	2	AY.5	0.000041
S	1101	H1101H	caC	caT	2	2	AY.5.4	0.000553
S	1101	H1101Y	Cac	Tac	2	2	AY.58	0.001815
S	1101	H1101Q	caC	caG	2	2	AY.59	0.001059
S	1101	H1101Y	Cac	Tac	2	2	AY.6	0.000082
S	1101	H1101Y	Cac	Tac	2	2	AY.61	0.00021
S	1101	H1101Y	Cac	Tac	2	2	AY.62	0.000871
S	1101	H1101H	caC	caT	2	2	AY.63	0.000774
S	1101	H1101H	caC	caT	2	2	AY.64	0.00119
S	1101	H1101D	Cac	Gac	2	2	AY.68	0.000547
S	1101	H1101Y	Cac	Tac	2	2	AY.68	0.000547
S	1101	H1101H	caC	caT	2	2	AY.74	0.000231
S	1101	H1101Y	Cac	Tac	2	2	AY.75.1	0.000361
S	1101	H1101Y	Cac	Tac	2	2	AY.77	0.002255
S	1101	H1101Q	caC	caA	2	2	AY.78	0.003082
S	1101	H1101Y	Cac	Tac	2	2	AY.85	0.000854
S	1101	H1101H	caC	caT	2	2	AY.88	0.001768
S	1101	H1101H	caC	caT	2	2	AY.92	0.000575
S	1101	H1101Y	Cac	Tac	2	2	AY.95	0.001522
S	1101	H1101Y	Cac	Tac	2	2	AY.98	0.000158
S	1101	H1101D	Cac	Gac	2	2	B	0.000256
S	1101	H1101Y	Cac	Tac	2	2	B	0.000256
S	1101	H1101R	cAc	cGc	2	2	B.1	0.000018
S	1101	H1101R	cAc	cGc	2	2	B.1.1.161	0.007067
S	1101	H1101H	caC	caT	2	2	B.1.1.214	0.000111
S	1101	H1101Q	caC	caG	2	2	B.1.1.222	0.000408
S	1101	H1101H	caC	caT	2	2	B.1.1.25	0.001137
S	1101	H1101Y	Cac	Tac	2	2	B.1.1.25	0.001137
S	1101	H1101H	caC	caT	2	2	B.1.1.269	0.002706
S	1101	H1101H	caC	caT	2	2	B.1.1.311	0.000716
S	1101	H1101H	caC	caT	2	2	B.1.1.312	0.003824
S	1101	H1101H	caC	caT	2	2	B.1.1.318	0.000604
S	1101	H1101H	caC	caT	2	2	B.1.1.326	0.003521
S	1101	H1101Y	Cac	Tac	2	2	B.1.1.326	0.003521
S	1101	H1101Y	Cac	Tac	2	2	B.1.1.372	0.001377
S	1101	H1101H	caC	caT	2	2	B.1.1.372	0.001377
S	1101	H1101Y	Cac	Tac	2	2	B.1.1.513	0.024691
S	1101	H1101H	caC	caT	2	2	B.1.118	0.013423
S	1101	H1101Y	Cac	Tac	2	2	B.1.126	0.002551
S	1101	H1101Y	Cac	Tac	2	2	B.1.160.30	0.005952
S	1101	H1101Q	caC	caA	2	2	B.1.177	0.000026
S	1101	H1101Y	Cac	Tac	2	2	B.1.177.33	0.003289
S	1101	H1101H	caC	caT	2	2	B.1.177.41	0.005
S	1101	H1101Y	Cac	Tac	2	2	B.1.177.7	0.00033
S	1101	H1101H	caC	caT	2	2	B.1.177.73	0.001133
S	1101	H1101D	Cac	Gac	2	2	B.1.177.73	0.001133
S	1101	H1101H	caC	caT	2	2	B.1.177.79	0.004684
S	1101	H1101H	caC	caT	2	2	B.1.177.81	0.000379
S	1101	H1101Y	Cac	Tac	2	2	B.1.177.86	0.000367
S	1101	H1101N	Cac	Aac	2	2	B.1.2	0.000018
S	1101	H1101H	caC	caT	2	2	B.1.210	0.004264
S	1101	H1101Y	Cac	Tac	2	2	B.1.214	0.007326
S	1101	H1101H	caC	caT	2	2	B.1.232	0.001075
S	1101	H1101H	caC	caT	2	2	B.1.240	0.000431
S	1101	H1101Y	Cac	Tac	2	2	B.1.241	0.001623
S	1101	H1101Q	caC	caA	2	2	B.1.258.11	0.000793
S	1101	H1101H	caC	caT	2	2	B.1.3	0.005236
S	1101	H1101Y	Cac	Tac	2	2	B.1.336	0.004878
S	1101	H1101H	caC	caT	2	2	B.1.349	0.00143
S	1101	H1101Y	Cac	Tac	2	2	B.1.36	0.000292
S	1101	H1101H	caC	caT	2	2	B.1.36.21	0.00432
S	1101	H1101Y	Cac	Tac	2	2	B.1.36.22	0.002415
S	1101	H1101H	caC	caT	2	2	B.1.36.37	0.005556
S	1101	H1101H	caC	caT	2	2	B.1.36.8	0.002
S	1101	H1101H	caC	caT	2	2	B.1.369	0.00057
S	1101	H1101H	caC	caT	2	2	B.1.398	0.005952
S	1101	H1101H	caC	caT	2	2	B.1.424	0.016129
S	1101	H1101Y	Cac	Tac	2	2	B.1.438.1	0.000215
S	1101	H1101H	caC	caT	2	2	B.1.44	0.016667
S	1101	H1101Y	Cac	Tac	2	2	B.1.460	0.035714
S	1101	H1101H	caC	caT	2	2	B.1.497	0.00063
S	1101	H1101Q	caC	caA	2	2	B.1.517	0.000854
S	1101	H1101Y	Cac	Tac	2	2	B.1.575	0.000607
S	1101	H1101H	caC	caT	2	2	B.1.582	0.000981
S	1101	H1101H	caC	caT	2	2	B.1.595	0.000522
S	1101	H1101Y	Cac	Tac	2	2	B.1.596	0.000174
S	1101	H1101H	caC	caT	2	2	B.4	0.004415
S	1101	H1101Y	Cac	Tac	2	2	B.6.6	0.001778
S	1101	H1101Y	Cac	Tac	2	2	C.26	0.014706
S	1101	H1101H	caC	caT	2	2	D.2	0.00015
S	1101	H1101Y	Cac	Tac	2	2	D.2	0.00015
S	1101	H1101R	cAc	cGc	2	2	P.1	0.000032
S	1101	H1101Y	Cac	Tac	2	2	P.1.12	0.000968
S	1101	H1101H	caC	caT	2	2	P.1.16	0.000748
S	1101	H1101H	caC	caT	2	2	Q.2	0.001227
S	1101	H1101Y	Cac	Tac	2	2	Q.7	0.002222
S	1101	H1101R	cAc	cGc	1	1		0.055556
S	1101	H1101H	caC	caT	1	1		0.055556
S	1101	H1101S	CAc	AGc	1	1		0.055556
S	1101	H1101Y	Cac	Tac	1	1	A	0.000387
S	1101	H1101H	caC	caT	1	1	A.2.5.2	0.001572
S	1101	H1101Y	Cac	Tac	1	1	AE.7	0.083333
S	1101	H1101H	caC	caT	1	1	AE.8	0.000489
S	1101	H1101S	CAc	AGc	1	1	All	0
S	1101	H1101H	caC	caT	1	1	AY.1	0.000396
S	1101	H1101N	Cac	Aac	1	1	AY.103	0.000006
S	1101	H1101Y	Cac	Tac	1	1	AY.104	0.001984
S	1101	H1101H	caC	caT	1	1	AY.114	0.000231
S	1101	H1101Y	Cac	Tac	1	1	AY.115	0.005208
S	1101	H1101H	caC	caT	1	1	AY.116	0.000287
S	1101	H1101del	CAC	---	1	1	AY.118	0.000063
S	1101	H1101Q	caC	caA	1	1	AY.118	0.000063
S	1101	H1101D	Cac	Gac	1	1	AY.119	0.000035
S	1101	H1101R	cAc	cGc	1	1	AY.119	0.000035
S	1101	H1101H	caC	caT	1	1	AY.12	0.000316
S	1101	H1101Q	caC	caG	1	1	AY.16.1	0.00047
S	1101	H1101N	Cac	Aac	1	1	AY.16.1	0.00047
S	1101	H1101H	caC	caT	1	1	AY.16.1	0.00047
S	1101	H1101Y	Cac	Tac	1	1	AY.2	0.000356
S	1101	H1101R	cAc	cGc	1	1	AY.23	0.00007
S	1101	H1101N	Cac	Aac	1	1	AY.25	0.000006
S	1101	H1101D	Cac	Gac	1	1	AY.25	0.000006
S	1101	H1101P	cAc	cCc	1	1	AY.25	0.000006
S	1101	H1101N	Cac	Aac	1	1	AY.26	0.000028
S	1101	H1101H	caC	caT	1	1	AY.27	0.000065
S	1101	H1101N	Cac	Aac	1	1	AY.29	0.000016
S	1101	H1101H	caC	caT	1	1	AY.30	0.000396
S	1101	H1101H	caC	caT	1	1	AY.32	0.000532
S	1101	H1101H	caC	caT	1	1	AY.34.1	0.00051
S	1101	H1101R	cAc	cGc	1	1	AY.34.1	0.00051
S	1101	H1101Q	caC	caA	1	1	AY.35	0.000233
S	1101	H1101H	caC	caT	1	1	AY.35	0.000233
S	1101	H1101Y	Cac	Tac	1	1	AY.35	0.000233
S	1101	H1101del	CAC	---	1	1	AY.36	0.000148
S	1101	H1101Y	Cac	Tac	1	1	AY.38	0.000499
S	1101	H1101R	cAc	cGc	1	1	AY.39	0.000025
S	1101	H1101Y	Cac	Tac	1	1	AY.4.1	0.000737
S	1101	H1101D	Cac	Gac	1	1	AY.4.2	0.000022
S	1101	H1101Y	Cac	Tac	1	1	AY.4.2.1	0.000149
S	1101	H1101H	caC	caT	1	1	AY.4.3	0.000842
S	1101	H1101Y	Cac	Tac	1	1	AY.4.5	0.000107
S	1101	H1101Q	caC	caA	1	1	AY.40	0.000964
S	1101	H1101D	Cac	Gac	1	1	AY.42	0.00004
S	1101	H1101N	Cac	Aac	1	1	AY.43	0.000004
S	1101	H1101L	cAc	cTc	1	1	AY.43	0.000004
S	1101	H1101D	Cac	Gac	1	1	AY.43	0.000004
S	1101	H1101R	cAc	cGc	1	1	AY.43	0.000004
S	1101	H1101del1	Cac	-ac	1	1	AY.44	0.000006
S	1101	H1101D	Cac	Gac	1	1	AY.45	0.000122
S	1101	H1101Y	Cac	Tac	1	1	AY.46.1	0.001027
S	1101	H1101H	caC	caT	1	1	AY.46.4	0.000165
S	1101	H1101Y	Cac	Tac	1	1	AY.46.5	0.000198
S	1101	H1101D	Cac	Gac	1	1	AY.46.6	0.000072
S	1101	H1101Q	caC	caA	1	1	AY.47	0.000031
S	1101	H1101Q	caC	caG	1	1	AY.5.1	0.003759
S	1101	H1101D	Cac	Gac	1	1	AY.52	0.000814
S	1101	H1101Y	Cac	Tac	1	1	AY.52	0.000814
S	1101	H1101L	cAc	cTc	1	1	AY.52	0.000814
S	1101	H1101Y	Cac	Tac	1	1	AY.55	0.000917
S	1101	H1101D	Cac	Gac	1	1	AY.57	0.000656
S	1101	H1101Y	Cac	Tac	1	1	AY.59	0.00053
S	1101	H1101D	Cac	Gac	1	1	AY.61	0.000105
S	1101	H1101Q	caC	caA	1	1	AY.61	0.000105
S	1101	H1101H	caC	caT	1	1	AY.62	0.000436
S	1101	H1101Y	Cac	Tac	1	1	AY.66	0.00107
S	1101	H1101del	CAC	---	1	1	AY.67	0.000464
S	1101	H1101P	cAc	cCc	1	1	AY.69	0.000187
S	1101	H1101H	caC	caT	1	1	AY.69	0.000187
S	1101	H1101Q	caC	caG	1	1	AY.7.1	0.000113
S	1101	H1101H	caC	caT	1	1	AY.7.1	0.000113
S	1101	H1101D	Cac	Gac	1	1	AY.7.1	0.000113
S	1101	H1101Y	Cac	Tac	1	1	AY.7.1	0.000113
S	1101	H1101H	caC	caT	1	1	AY.71	0.000475
S	1101	H1101H	caC	caT	1	1	AY.75.1	0.00018
S	1101	H1101D	Cac	Gac	1	1	AY.75.1	0.00018
S	1101	H1101P	cAc	cCc	1	1	AY.75.1	0.00018
S	1101	H1101H	caC	caT	1	1	AY.78	0.001541
S	1101	H1101Y	Cac	Tac	1	1	AY.79	0.001211
S	1101	H1101H	caC	caT	1	1	AY.81	0.001992
S	1101	H1101Y	Cac	Tac	1	1	AY.87	0.000833
S	1101	H1101Q	caC	caA	1	1	AY.89	0.004902
S	1101	H1101Q	caC	caA	1	1	AY.9.1	0.000084
S	1101	H1101D	Cac	Gac	1	1	AY.9.2	0.000037
S	1101	H1101Q	caC	caG	1	1	AY.93	0.000273
S	1101	H1101H	caC	caT	1	1	AZ.1	0.000867
S	1101	H1101Y	Cac	Tac	1	1	AZ.2	0.000821
S	1101	H1101P	cAc	cCc	1	1	B	0.000128
S	1101	H1101del1	Cac	-ac	1	1	B.1	0.000009
S	1101	H1101del	CAC	---	1	1	B.1	0.000009
S	1101	H1101L	cAc	cTc	1	1	B.1	0.000009
S	1101	H1101P	cAc	cCc	1	1	B.1	0.000009
S	1101	H1101H	caC	caT	1	1	B.1.1.1	0.000327
S	1101	H1101H	caC	caT	1	1	B.1.1.12	0.007463
S	1101	H1101H	caC	caT	1	1	B.1.1.121	0.002427
S	1101	H1101N	Cac	Aac	1	1	B.1.1.125	0.010204
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.141	0.002012
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.152	0.04
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.161	0.003534
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.174	0.003378
S	1101	H1101H	caC	caT	1	1	B.1.1.176	0.000439
S	1101	H1101H	caC	caT	1	1	B.1.1.198	0.001468
S	1101	H1101R	cAc	cGc	1	1	B.1.1.214	0.000055
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.216	0.00089
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.222	0.000204
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.225	0.007194
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.229	0.005747
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.236	0.006897
S	1101	H1101H	caC	caT	1	1	B.1.1.240	0.004695
S	1101	H1101H	caC	caT	1	1	B.1.1.243	0.004082
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.26	0.005236
S	1101	H1101Q	caC	caA	1	1	B.1.1.263	0.001558
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.277	0.000759
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.28	0.000311
S	1101	H1101Q	caC	caA	1	1	B.1.1.284	0.000107
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.318	0.000302
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.33	0.000421
S	1101	H1101H	caC	caT	1	1	B.1.1.353	0.020833
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.354	0.004386
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.369	0.000446
S	1101	H1101H	caC	caT	1	1	B.1.1.389	0.006061
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.397	0.002252
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.416	0.000905
S	1101	H1101H	caC	caT	1	1	B.1.1.422	0.045455
S	1101	H1101H	caC	caT	1	1	B.1.1.434	0.000349
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.445	0.037037
S	1101	H1101H	caC	caT	1	1	B.1.1.448	0.002033
S	1101	H1101Y	Cac	Tac	1	1	B.1.1.466	0.008696
S	1101	H1101H	caC	caT	1	1	B.1.1.47	0.005348
S	1101	H1101H	caC	caT	1	1	B.1.1.5	0.008333
S	1101	H1101H	caC	caT	1	1	B.1.1.500	0.02
S	1101	H1101H	caC	caT	1	1	B.1.1.517	0.006803
S	1101	H1101Q	caC	caA	1	1	B.1.1.519	0.00004
S	1101	H1101D	Cac	Gac	1	1	B.1.1.519	0.00004
S	1101	H1101H	caC	caT	1	1	B.1.1.523	0.001563
S	1101	H1101H	caC	caT	1	1	B.1.1.525	0.005464
S	1101	H1101H	caC	caT	1	1	B.1.1.57	0.011494
S	1101	H1101H	caC	caT	1	1	B.1.1.70	0.000341
S	1101	H1101H	caC	caT	1	1	B.1.1.71	0.006061
S	1101	H1101H	caC	caT	1	1	B.1.1.88	0.071429
S	1101	H1101H	caC	caT	1	1	B.1.1.99	0.02381
S	1101	H1101H	caC	caT	1	1	B.1.110.3	0.000718
S	1101	H1101H	caC	caT	1	1	B.1.111	0.001175
S	1101	H1101H	caC	caT	1	1	B.1.128	0.000635
S	1101	H1101Y	Cac	Tac	1	1	B.1.13	0.002375
S	1101	H1101Y	Cac	Tac	1	1	B.1.147	0.000756
S	1101	H1101H	caC	caT	1	1	B.1.147	0.000756
S	1101	H1101H	caC	caT	1	1	B.1.160.8	0.001289
S	1101	H1101Y	Cac	Tac	1	1	B.1.160.9	0.007194
S	1101	H1101H	caC	caT	1	1	B.1.168	0.027027
S	1101	H1101R	cAc	cGc	1	1	B.1.177	0.000013
S	1101	H1101Y	Cac	Tac	1	1	B.1.177.35	0.000691
S	1101	H1101Q	caC	caA	1	1	B.1.177.4	0.000211
S	1101	H1101H	caC	caT	1	1	B.1.177.4	0.000211
S	1101	H1101Y	Cac	Tac	1	1	B.1.177.43	0.001477
S	1101	H1101H	caC	caT	1	1	B.1.177.51	0.004566
S	1101	H1101H	caC	caT	1	1	B.1.177.57	0.000281
S	1101	H1101Y	Cac	Tac	1	1	B.1.177.58	0.001332
S	1101	H1101H	caC	caT	1	1	B.1.177.65	0.000665
S	1101	H1101D	Cac	Gac	1	1	B.1.177.7	0.000165
S	1101	H1101H	caC	caT	1	1	B.1.177.72	0.00339
S	1101	H1101Y	Cac	Tac	1	1	B.1.177.82	0.000477
S	1101	H1101H	caC	caT	1	1	B.1.177.86	0.000183
S	1101	H1101H	caC	caT	1	1	B.1.179	0.003759
S	1101	H1101H	caC	caT	1	1	B.1.180	0.05
S	1101	H1101R	cAc	cGc	1	1	B.1.2	0.000009
S	1101	H1101Y	Cac	Tac	1	1	B.1.223	0.002778
S	1101	H1101Y	Cac	Tac	1	1	B.1.236	0.002053
S	1101	H1101H	caC	caT	1	1	B.1.237	0.004975
S	1101	H1101R	cAc	cGc	1	1	B.1.240	0.000216
S	1101	H1101Q	caC	caG	1	1	B.1.258.17	0.000104
S	1101	H1101H	caC	caT	1	1	B.1.258.4	0.003448
S	1101	H1101H	caC	caT	1	1	B.1.279	0.000514
S	1101	H1101Y	Cac	Tac	1	1	B.1.298	0.002114
S	1101	H1101H	caC	caT	1	1	B.1.302	0.013333
S	1101	H1101Y	Cac	Tac	1	1	B.1.320	0.001245
S	1101	H1101H	caC	caT	1	1	B.1.324	0.001605
S	1101	H1101H	caC	caT	1	1	B.1.329	0.000608
S	1101	H1101Y	Cac	Tac	1	1	B.1.329	0.000608
S	1101	H1101Y	Cac	Tac	1	1	B.1.332	0.003497
S	1101	H1101R	cAc	cGc	1	1	B.1.36	0.000146
S	1101	H1101D	Cac	Gac	1	1	B.1.36	0.000146
S	1101	H1101H	caC	caT	1	1	B.1.36.17	0.000494
S	1101	H1101Y	Cac	Tac	1	1	B.1.36.19	0.009259
S	1101	H1101H	caC	caT	1	1	B.1.36.19	0.009259
S	1101	H1101H	caC	caT	1	1	B.1.36.29	0.000517
S	1101	H1101H	caC	caT	1	1	B.1.36.38	0.001642
S	1101	H1101H	caC	caT	1	1	B.1.36.39	0.002217
S	1101	H1101Q	caC	caA	1	1	B.1.36.8	0.001
S	1101	H1101Q	caC	caA	1	1	B.1.362	0.001541
S	1101	H1101Y	Cac	Tac	1	1	B.1.367	0.000792
S	1101	H1101Y	Cac	Tac	1	1	B.1.375	0.00082
S	1101	H1101Y	Cac	Tac	1	1	B.1.396	0.000706
S	1101	H1101Y	Cac	Tac	1	1	B.1.404	0.001302
S	1101	H1101Y	Cac	Tac	1	1	B.1.405	0.012346
S	1101	H1101R	cAc	cGc	1	1	B.1.409	0.000781
S	1101	H1101H	caC	caT	1	1	B.1.416.1	0.001563
S	1101	H1101H	caC	caT	1	1	B.1.425	0.002994
S	1101	H1101Q	caC	caA	1	1	B.1.429	0.000024
S	1101	H1101H	caC	caT	1	1	B.1.436	0.001029
S	1101	H1101H	caC	caT	1	1	B.1.441	0.009615
S	1101	H1101Y	Cac	Tac	1	1	B.1.453	0.003236
S	1101	H1101H	caC	caT	1	1	B.1.456	0.003268
S	1101	H1101Y	Cac	Tac	1	1	B.1.456	0.003268
S	1101	H1101H	caC	caT	1	1	B.1.466.2	0.000391
S	1101	H1101Y	Cac	Tac	1	1	B.1.470	0.001404
S	1101	H1101H	caC	caT	1	1	B.1.473	0.019231
S	1101	H1101N	Cac	Aac	1	1	B.1.499	0.00105
S	1101	H1101D	Cac	Gac	1	1	B.1.499	0.00105
S	1101	H1101H	caC	caT	1	1	B.1.504	0.03125
S	1101	H1101R	cAc	cGc	1	1	B.1.526	0.000024
S	1101	H1101L	cAc	cTc	1	1	B.1.526	0.000024
S	1101	H1101H	caC	caT	1	1	B.1.530	0.007143
S	1101	H1101Y	Cac	Tac	1	1	B.1.540	0.009709
S	1101	H1101H	caC	caT	1	1	B.1.540	0.009709
S	1101	H1101Y	Cac	Tac	1	1	B.1.558	0.004566
S	1101	H1101H	caC	caT	1	1	B.1.561	0.000397
S	1101	H1101Y	Cac	Tac	1	1	B.1.564	0.000426
S	1101	H1101Q	caC	caG	1	1	B.1.576	0.000907
S	1101	H1101Y	Cac	Tac	1	1	B.1.577	0.000687
S	1101	H1101P	cAc	cCc	1	1	B.1.582	0.000491
S	1101	H1101R	cAc	cGc	1	1	B.1.582	0.000491
S	1101	H1101Y	Cac	Tac	1	1	B.1.588	0.00091
S	1101	H1101Y	Cac	Tac	1	1	B.1.595	0.000261
S	1101	H1101D	Cac	Gac	1	1	B.1.596	0.000087
S	1101	H1101H	caC	caT	1	1	B.1.607	0.052632
S	1101	H1101H	caC	caT	1	1	B.1.609	0.000479
S	1101	H1101del	CAC	---	1	1	B.1.617.2	0.000004
S	1101	H1101Y	Cac	Tac	1	1	B.1.619	0.000871
S	1101	H1101Y	Cac	Tac	1	1	B.1.621.1	0.000506
S	1101	H1101H	caC	caT	1	1	B.1.621.1	0.000506
S	1101	H1101Y	Cac	Tac	1	1	B.1.623	0.000536
S	1101	H1101Q	caC	caA	1	1	B.1.623	0.000536
S	1101	H1101H	caC	caT	1	1	B.1.628	0.000352
S	1101	H1101del	CAC	---	1	1	B.1.630	0.005236
S	1101	H1101P	cAc	cCc	1	1	B.1.637	0.000073
S	1101	H1101Y	Cac	Tac	1	1	B.1.84	0.020833
S	1101	H1101H	caC	caT	1	1	B.3	0.000831
S	1101	H1101H	caC	caT	1	1	B.31	0.003731
S	1101	H1101Y	Cac	Tac	1	1	B.4	0.002208
S	1101	H1101H	caC	caT	1	1	B.40	0.000364
S	1101	H1101H	caC	caT	1	1	B.6.3	0.026316
S	1101	H1101Y	Cac	Tac	1	1	C.11	0.010638
S	1101	H1101H	caC	caT	1	1	C.23	0.005814
S	1101	H1101Y	Cac	Tac	1	1	C.28	0.04
S	1101	H1101del	CAC	---	1	1	C.37	0.000116
S	1101	H1101Q	caC	caA	1	1	D.2	0.000075
S	1101	H1101H	caC	caT	1	1	L.3	0.003546
S	1101	H1101Y	Cac	Tac	1	1	N.5	0.001767
S	1101	H1101del	CAC	---	1	1	P.1	0.000016
S	1101	H1101Y	Cac	Tac	1	1	P.1.1	0.000318
S	1101	H1101Y	Cac	Tac	1	1	P.1.10	0.000269
S	1101	H1101H	caC	caT	1	1	P.1.13	0.000898
S	1101	H1101del	CAC	---	1	1	P.1.15	0.000232
S	1101	H1101Y	Cac	Tac	1	1	P.1.15	0.000232
S	1101	H1101Q	caC	caA	1	1	P.1.15	0.000232
S	1101	H1101Y	Cac	Tac	1	1	P.1.7	0.000319
S	1101	H1101Y	Cac	Tac	1	1	P.2	0.000187
S	1101	H1101Y	Cac	Tac	1	1	Q.3	0.000145
S	1101	H1101Y	Cac	Tac	1	1	W.1	0.008696
S	1101	H1101Y	Cac	Tac	1	1	W.4	0.001351
S	1101	H1101Y	Cac	Tac	1	1	Z.1	0.00289

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