CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1100

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1100T1100TsynacAacG7717350.95330724860-24862
S1100T1100TsynacAacT771290.037613524860-24862
S1100T1100TsynacAacC77170.0090791224860-24862
S1100T1100InonsynaCaaTa2522510.99603224860-24862
S1100T1100InonsynaCAaTT25210.0039682524860-24862
S1100T1100KnonsynaCaaAa7171124860-24862
S1100T1100AnonsynAcaGca3333124860-24862
S1100T1100SnonsynAcaTca2020124860-24862
S1100T1100deldelACA---1717124860-24862
S1100T1100PnonsynAcaCca33124860-24862
S1100T1100RnonsynaCaaGa33124860-24862
S1100T1100LnonsynACaTTa22124860-24862
S1100T1100VnonsynACaGTa11124860-24862
S1100T1100NnonsynaCAaAC11124860-24862
S1100T1100del1delAca-ca11124860-24862

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1100T1100TacAacG735771All0.000141
S1100T1100TacAacT29771All0.000006
S1100T1100TacAacC7771All0.000001
S1100T1100TacAacG507507B.1.81
S1100T1100IaCaaTa251252All0.000048
S1100T1100IaCAaTT1252All0
S1100T1100KaCaaAa7171All0.000014
S1100T1100KaCaaAa6464AY.30.000637
S1100T1100TacAacG6162B.1.10.001107
S1100T1100TacAacT162B.1.10.000018
S1100T1100IaCaaTa4949B.1.1.70.000044
S1100T1100TacAacG4148B.1.1.70.000037
S1100T1100TacAacT648B.1.1.70.000005
S1100T1100TacAacC148B.1.1.70.000001
S1100T1100IaCaaTa4141AY.1030.000255
S1100T1100IaCaaTa3737AY.440.000225
S1100T1100AAcaGca3333All0.000006
S1100T1100TacAacG2828AY.430.000124
S1100T1100TacAacG1924B.10.000174
S1100T1100TacAacT324B.10.000027
S1100T1100TacAacC224B.10.000018
S1100T1100SAcaTca2020All0.000004
S1100T1100IaCaaTa1919AY.40.00003
S1100T1100IaCaaTa1818B.1.617.20.000068
S1100T1100delACA---1717All0.000003
S1100T1100TacAacG1414AY.470.000435
S1100T1100IaCaaTa1010AY.250.00006
S1100T1100TacAacG99AY.3.10.000767
S1100T1100IaCaaTa88AY.430.000035
S1100T1100IaCaaTa88B.10.000073
S1100T1100AAcaGca88B.1.1.70.000007
S1100T1100IaCaaTa77AY.260.000198
S1100T1100TacAacG77B.1.3960.00494
S1100T1100TacAacG46AY.1030.000025
S1100T1100TacAacT16AY.1030.000006
S1100T1100TacAacC16AY.1030.000006
S1100T1100TacAacG66B.1.20.000053
S1100T1100TacAacT66B.1.5720.15
S1100T1100SAcaTca55AY.250.00003
S1100T1100TacAacG45AY.40.000006
S1100T1100TacAacT15AY.40.000002
S1100T1100IaCaaTa44P.10.000063
S1100T1100AAcaGca330.166667
S1100T1100RaCaaGa33All0.000001
S1100T1100PAcaCca33All0.000001
S1100T1100TacAacT33AY.1020.00008
S1100T1100IaCaaTa33AY.390.000074
S1100T1100SAcaTca33AY.40.000005
S1100T1100AAcaGca33AY.420.000121
S1100T1100delACA---33B.1.1.70.000003
S1100T1100IaCaaTa33B.1.2430.000209
S1100T1100TacAacG33B.1.258.170.000312
S1100T1100TacAacT33B.1.3510.000089
S1100T1100AAcaGca33B.1.4290.000071
S1100T1100SAcaTca33B.1.5260.000071
S1100T1100TacAacG220.111111
S1100T1100LACaTTa22All0
S1100T1100IaCaaTa22AY.1020.000053
S1100T1100KaCaaAa22AY.1190.000071
S1100T1100delACA---22AY.1200.000074
S1100T1100TacAacG22AY.200.000078
S1100T1100TacAacT12AY.230.00007
S1100T1100TacAacG12AY.230.00007
S1100T1100AAcaGca22AY.250.000012
S1100T1100TacAacT22AY.290.000032
S1100T1100IaCaaTa22AY.30.00002
S1100T1100AAcaGca22AY.30.00002
S1100T1100AAcaGca22AY.40.000003
S1100T1100delACA---22AY.40.000003
S1100T1100IaCaaTa22AY.4.50.000215
S1100T1100delACA---22AY.430.000009
S1100T1100TacAacG22AY.50.000041
S1100T1100IaCaaTa22AY.640.00119
S1100T1100IaCaaTa22AY.750.000112
S1100T1100IaCaaTa22AY.9.10.000167
S1100T1100AAcaGca22B.10.000018
S1100T1100IaCaaTa22B.1.10.000036
S1100T1100IaCaaTa22B.1.1.1610.007067
S1100T1100TacAacG22B.1.1.250.001137
S1100T1100SAcaTca22B.1.1.70.000002
S1100T1100AAcaGca22B.1.1770.000026
S1100T1100IaCaaTa22B.1.1770.000026
S1100T1100IaCaaTa22B.1.20.000018
S1100T1100TacAacC12B.1.2580.000067
S1100T1100TacAacG12B.1.2580.000067
S1100T1100IaCaaTa22B.1.36.290.001035
S1100T1100AAcaGca22B.1.4020.019608
S1100T1100TacAacG22B.1.564.10.003155
S1100T1100KaCaaAa22B.1.6090.000959
S1100T1100TacAacG22C.36.30.001134
S1100T1100TacAacG22C.370.000232
S1100T1100IaCaaTa22Q.20.001227
S1100T1100IaCaaTa110.055556
S1100T1100VACaGTa110.055556
S1100T1100LACaTTa110.055556
S1100T1100SAcaTca110.055556
S1100T1100IaCaaTa11A.280.002646
S1100T1100IaCaaTa11AH.30.003802
S1100T1100VACaGTa11All0
S1100T1100NaCAaAC11All0
S1100T1100del1Aca-ca11All0
S1100T1100AAcaGca11AY.1030.000006
S1100T1100PAcaCca11AY.1030.000006
S1100T1100RaCaaGa11AY.1030.000006
S1100T1100TacAacG11AY.1130.000142
S1100T1100delACA---11AY.1180.000063
S1100T1100IaCaaTa11AY.1190.000035
S1100T1100TacAacG11AY.1200.000037
S1100T1100del1Aca-ca11AY.130.000161
S1100T1100AAcaGca11AY.230.00007
S1100T1100TacAacG11AY.250.000006
S1100T1100TacAacG11AY.260.000028
S1100T1100IaCaaTa11AY.290.000016
S1100T1100SAcaTca11AY.30.00001
S1100T1100TacAacT11AY.350.000233
S1100T1100delACA---11AY.360.000148
S1100T1100SAcaTca11AY.39.10.00004
S1100T1100PAcaCca11AY.40.000002
S1100T1100TacAacG11AY.410.000294
S1100T1100SAcaTca11AY.440.000006
S1100T1100TacAacG11AY.450.000122
S1100T1100AAcaGca11AY.460.000104
S1100T1100IaCaaTa11AY.46.10.001027
S1100T1100AAcaGca11AY.470.000031
S1100T1100IaCaaTa11AY.540.000095
S1100T1100IaCaaTa11AY.60.000041
S1100T1100TacAacG11AY.670.000464
S1100T1100IaCaaTa11AY.7.10.000113
S1100T1100IaCaaTa11AY.75.10.00018
S1100T1100IaCAaTT11AY.790.001211
S1100T1100TacAacG11AZ.20.000821
S1100T1100IaCaaTa11B0.000128
S1100T1100delACA---11B.10.000009
S1100T1100RaCaaGa11B.10.000009
S1100T1100KaCaaAa11B.1.10.000018
S1100T1100SAcaTca11B.1.1.1440.028571
S1100T1100TacAacG11B.1.1.2140.000055
S1100T1100IaCaaTa11B.1.1.4340.000349
S1100T1100RaCaaGa11B.1.1.70.000001
S1100T1100LACaTTa11B.1.1.70.000001
S1100T1100NaCAaAC11B.1.1.70.000001
S1100T1100TacAacC11B.1.1.700.000341
S1100T1100IaCaaTa11B.1.1600.000031
S1100T1100SAcaTca11B.1.177.570.000281
S1100T1100KaCaaAa11B.1.177.750.001041
S1100T1100KaCaaAa11B.1.20.000009
S1100T1100TacAacG11B.1.2220.001692
S1100T1100IaCaaTa11B.1.3510.00003
S1100T1100TacAacG11B.1.36.170.000494
S1100T1100SAcaTca11B.1.36.180.00042
S1100T1100TacAacG11B.1.36.180.00042
S1100T1100TacAacG11B.1.3670.000792
S1100T1100IaCaaTa11B.1.3990.001934
S1100T1100TacAacG11B.1.4270.00005
S1100T1100TacAacG11B.1.5250.000113
S1100T1100IaCaaTa11B.1.5950.000261
S1100T1100IaCaaTa11B.1.6090.000479
S1100T1100TacAacG11B.1.617.10.000129
S1100T1100delACA---11B.1.617.20.000004
S1100T1100PAcaCca11B.1.617.20.000004
S1100T1100TacAacC11B.1.6250.002353
S1100T1100delACA---11B.1.6300.005236
S1100T1100delACA---11C.370.000116
S1100T1100IaCaaTa11D.20.000075
S1100T1100IaCaaTa11N.70.029412
S1100T1100delACA---11P.10.000016
S1100T1100IaCaaTa11P.1.140.000048
S1100T1100delACA---11P.1.150.000232
S1100T1100TacAacT11P.1.70.000319