CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1094

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1094V1094VsyngtCgtT227118560.81726124842-24844
S1094V1094VsyngtCgtA22714110.18097824842-24844
S1094V1094VsyngtCgtG227140.0017613424842-24844
S1094V1094InonsynGtcAtc3743720.99465224842-24844
S1094V1094InonsynGtCAtA37420.0053475924842-24844
S1094V1094FnonsynGtcTtc122122124842-24844
S1094V1094AnonsyngTcgCc62610.98387124842-24844
S1094V1094AnonsyngTCgCT6210.01612924842-24844
S1094V1094deldelGTC---2626124842-24844
S1094V1094LnonsynGtcCtc55124842-24844
S1094V1094GnonsyngTcgGc33124842-24844
S1094V1094DnonsyngTcgAc22124842-24844
S1094V1094SnonsynGTCTCT11124842-24844
S1094V1094del1delGtC-tT11124842-24844

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1094V1094VgtCgtT18562271All0.000355
S1094V1094VgtCgtA4112271All0.000079
S1094V1094VgtCgtG42271All0.000001
S1094V1094VgtCgtA266397AY.40.000414
S1094V1094VgtCgtT130397AY.40.000202
S1094V1094VgtCgtG1397AY.40.000002
S1094V1094IGtcAtc372374All0.000071
S1094V1094IGtCAtA2374All0
S1094V1094VgtCgtT200201B.1.617.20.000753
S1094V1094VgtCgtA1201B.1.617.20.000004
S1094V1094VgtCgtT187195B.1.1.70.000167
S1094V1094VgtCgtA5195B.1.1.70.000004
S1094V1094VgtCgtG3195B.1.1.70.000003
S1094V1094VgtCgtT136136AY.430.000603
S1094V1094FGtcTtc122122All0.000023
S1094V1094IGtcAtc113113AY.1110.020696
S1094V1094VgtCgtA109109B.1.1.2270.473913
S1094V1094VgtCgtT9595AY.98.10.004601
S1094V1094VgtCgtT8787AY.9.20.003195
S1094V1094VgtCgtT7474AY.1030.000459
S1094V1094AgTcgCc6162All0.000012
S1094V1094AgTCgCT162All0
S1094V1094FGtcTtc5353B.1.1.70.000047
S1094V1094VgtCgtT5050B.1.1770.000658
S1094V1094VgtCgtT5050B.1.258.150.943396
S1094V1094VgtCgtT4548AY.1000.00207
S1094V1094VgtCgtA348AY.1000.000138
S1094V1094IGtcAtc4747B.1.1600.001466
S1094V1094VgtCgtT4545B.1.177.810.00852
S1094V1094VgtCgtT4141AY.440.00025
S1094V1094VgtCgtT3940AY.30.000388
S1094V1094VgtCgtA140AY.30.00001
S1094V1094IGtcAtc3535AY.40.000054
S1094V1094VgtCgtT3434B.1.2430.002366
S1094V1094VgtCgtT3333B.1.20.000291
S1094V1094VgtCgtT2830AY.1020.000742
S1094V1094VgtCgtA230AY.1020.000053
S1094V1094IGtcAtc3030B.1.2400.006467
S1094V1094VgtCgtT2628B.10.000238
S1094V1094VgtCgtA228B.10.000018
S1094V1094delGTC---2626All0.000005
S1094V1094VgtCgtT2223AY.1180.001378
S1094V1094VgtCgtA123AY.1180.000063
S1094V1094VgtCgtT2323AY.250.000138
S1094V1094VgtCgtT2222B.1.177.20.1
S1094V1094VgtCgtT2222B.1.5250.00249
S1094V1094VgtCgtT1920AY.390.00047
S1094V1094VgtCgtA120AY.390.000025
S1094V1094VgtCgtT1919B.1.3690.005419
S1094V1094VgtCgtT1819P.10.000284
S1094V1094VgtCgtA119P.10.000016
S1094V1094VgtCgtT1717B.1.10.000308
S1094V1094VgtCgtT1616B.1.177.620.01907
S1094V1094IGtcAtc1515B.1.10.000272
S1094V1094VgtCgtT1414AY.1190.000494
S1094V1094IGtcAtc1414B.1.1.70.000013
S1094V1094VgtCgtT1414P.1.140.000669
S1094V1094VgtCgtT1313A.23.10.009155
S1094V1094VgtCgtT1212AY.290.000189
S1094V1094VgtCgtT1212B.1.2210.000852
S1094V1094VgtCgtT1012B.1.258.170.00104
S1094V1094VgtCgtA212B.1.258.170.000208
S1094V1094VgtCgtT1212B.1.4290.000282
S1094V1094VgtCgtT1111B.1.5260.000259
S1094V1094IGtcAtc1010AY.60.000411
S1094V1094VgtCgtT1010B.1.1.2220.00204
S1094V1094VgtCgtT1010B.1.2580.000665
S1094V1094IGtcAtc1010Q.30.00145
S1094V1094IGtcAtc99AY.1020.000239
S1094V1094FGtcTtc99AY.440.000055
S1094V1094VgtCgtT89AY.50.000165
S1094V1094VgtCgtA19AY.50.000021
S1094V1094VgtCgtT88B.1.9.50.045455
S1094V1094VgtCgtT67AY.1170.000507
S1094V1094VgtCgtA17AY.1170.000085
S1094V1094VgtCgtT77AY.200.000272
S1094V1094FGtcTtc77AY.30.00007
S1094V1094FGtcTtc77AY.430.000031
S1094V1094VgtCgtT77AY.650.003731
S1094V1094FGtcTtc66AY.1030.000037
S1094V1094AgTcgCc66AY.250.000036
S1094V1094VgtCgtT66AY.300.002374
S1094V1094IGtcAtc66AY.330.000401
S1094V1094VgtCgtT66AY.4.2.10.000894
S1094V1094VgtCgtT66AY.920.001724
S1094V1094IGtcAtc66B.10.000055
S1094V1094VgtCgtT66B.1.1.2840.000644
S1094V1094VgtCgtT66B.1.1.5190.000238
S1094V1094VgtCgtT66N.50.010601
S1094V1094LGtcCtc55All0.000001
S1094V1094IGtcAtc55AY.1030.000031
S1094V1094VgtCgtT45AY.1200.000149
S1094V1094VgtCgtA15AY.1200.000037
S1094V1094VgtCgtT55AY.260.000142
S1094V1094AgTcgCc55AY.40.000008
S1094V1094FGtcTtc55AY.40.000008
S1094V1094IGtcAtc55AY.430.000022
S1094V1094VgtCgtT55AY.90.000338
S1094V1094VgtCgtT55B.1.2400.001078
S1094V1094VgtCgtT55B.1.4200.052083
S1094V1094VgtCgtT55B.1.617.10.000645
S1094V1094VgtCgtA55P.1.40.004883
S1094V1094AgTcgCc44AY.1030.000025
S1094V1094AgTcgCc44AY.1100.000451
S1094V1094VgtCgtT44AY.34.10.00204
S1094V1094FGtcTtc44AY.390.000099
S1094V1094VgtCgtT34AY.4.20.000065
S1094V1094VgtCgtA14AY.4.20.000022
S1094V1094delGTC---44AY.430.000018
S1094V1094AgTcgCc44B.1.10.000073
S1094V1094FGtcTtc44B.1.1.2940.005063
S1094V1094delGTC---44B.1.1.70.000004
S1094V1094VgtCgtT44B.1.1600.000125
S1094V1094VgtCgtT44B.1.177.870.002911
S1094V1094VgtCgtT44B.1.6090.001918
S1094V1094IGtcAtc44B.1.617.20.000015
S1094V1094FGtcTtc44B.1.6370.000292
S1094V1094IGtcAtc44B.6.60.003556
S1094V1094VgtCgtT44C.370.000464
S1094V1094AgTcgCc33A.2.5.20.004717
S1094V1094GgTcgGc33All0.000001
S1094V1094VgtCgtT33AY.10.001187
S1094V1094VgtCgtT33AY.130.000483
S1094V1094VgtCgtT33AY.140.000264
S1094V1094VgtCgtT23AY.230.000139
S1094V1094VgtCgtA13AY.230.00007
S1094V1094IGtcAtc33AY.260.000085
S1094V1094IGtcAtc33AY.290.000047
S1094V1094VgtCgtT33AY.3.10.000256
S1094V1094VgtCgtT23AY.39.10.000079
S1094V1094VgtCgtA13AY.39.10.00004
S1094V1094IGtcAtc33AY.440.000018
S1094V1094VgtCgtT33AY.5.40.00083
S1094V1094VgtCgtT33AY.840.001312
S1094V1094AgTcgCc33B.10.000027
S1094V1094VgtCgtT33B.1.177.570.000843
S1094V1094IGtcAtc33B.1.177.810.000568
S1094V1094AgTcgCc33B.1.2580.0002
S1094V1094VgtCgtT23B.1.4000.000858
S1094V1094VgtCgtA13B.1.4000.000429
S1094V1094VgtCgtT33B.1.5760.00272
S1094V1094FGtcTtc33B.1.617.20.000011
S1094V1094IGtcAtc33R.10.00027
S1094V1094delGTC---220.111111
S1094V1094LGtcCtc220.111111
S1094V1094IGtCAtA220.111111
S1094V1094AgTCgCT120.055556
S1094V1094AgTcgCc120.055556
S1094V1094DgTcgAc22All0
S1094V1094IGtcAtc22AY.1180.000125
S1094V1094delGTC---22AY.1200.000074
S1094V1094IGtcAtc22AY.120.20.002571
S1094V1094IGtcAtc22AY.200.000078
S1094V1094FGtcTtc22AY.250.000012
S1094V1094VgtCgtT22AY.340.000194
S1094V1094delGTC---22AY.40.000003
S1094V1094IGtcAtc22AY.4.20.000043
S1094V1094IGtcAtc22AY.420.00008
S1094V1094AgTcgCc22AY.430.000009
S1094V1094AgTcgCc22AY.440.000012
S1094V1094VgtCgtT22AY.450.000243
S1094V1094VgtCgtT22AY.46.20.001271
S1094V1094FGtcTtc22AY.60.000082
S1094V1094VgtCgtT22AY.610.00021
S1094V1094IGtcAtc22AY.700.000417
S1094V1094VgtCgtT22AY.99.20.000184
S1094V1094IGtcAtc22B.1.1.2140.000111
S1094V1094VgtCgtT22B.1.1.2140.000111
S1094V1094VgtCgtT22B.1.1.280.000622
S1094V1094VgtCgtT22B.1.1.3370.007194
S1094V1094IGtcAtc22B.1.1.5190.000079
S1094V1094AgTcgCc22B.1.1.70.000002
S1094V1094AgTcgCc22B.1.1770.000026
S1094V1094AgTcgCc22B.1.177.510.009132
S1094V1094VgtCgtT22B.1.177.860.000367
S1094V1094AgTcgCc22B.1.20.000018
S1094V1094IGtcAtc22B.1.20.000018
S1094V1094VgtCgtT22B.1.3490.00143
S1094V1094VgtCgtT22B.1.3510.000059
S1094V1094VgtCgtT22B.1.36.290.001035
S1094V1094VgtCgtT22B.1.4270.000101
S1094V1094VgtCgtT22B.1.466.20.000782
S1094V1094VgtCgtT22B.1.4970.00063
S1094V1094VgtCgtT22B.1.5960.000174
S1094V1094IGtcAtc22B.1.6090.000959
S1094V1094AgTcgCc22B.1.617.20.000008
S1094V1094VgtCgtT22B.30.001661
S1094V1094IGtcAtc22C.370.000232
S1094V1094FGtcTtc22P.10.000032
S1094V1094VgtCgtT22P.1.150.000465
S1094V1094VgtCgtT22P.1.70.000639
S1094V1094IGtcAtc22P.20.000373
S1094V1094FGtcTtc22Q.20.001227
S1094V1094VgtCgtT22Q.80.00033
S1094V1094FGtcTtc110.055556
S1094V1094VgtCgtT110.055556
S1094V1094AgTcgCc11A0.000387
S1094V1094VgtCgtT11A.190.009434
S1094V1094VgtCgtT11A.2.40.003367
S1094V1094VgtCgtT11A.2.50.000499
S1094V1094SGTCTCT11All0
S1094V1094del1GtC-tT11All0
S1094V1094VgtCgtA11AY.100.00053
S1094V1094AgTcgCc11AY.1020.000027
S1094V1094VgtCgtT11AY.1100.000113
S1094V1094VgtCgtT11AY.1110.000183
S1094V1094IGtcAtc11AY.1130.000142
S1094V1094VgtCgtT11AY.1140.000231
S1094V1094VgtCgtT11AY.1160.000287
S1094V1094delGTC---11AY.1180.000063
S1094V1094AgTcgCc11AY.1190.000035
S1094V1094GgTcgGc11AY.1190.000035
S1094V1094VgtCgtT11AY.120.20.001285
S1094V1094VgtCgtT11AY.16.10.00047
S1094V1094IGtcAtc11AY.16.10.00047
S1094V1094IGtcAtc11AY.230.00007
S1094V1094VgtCgtT11AY.240.000431
S1094V1094AgTcgCc11AY.290.000016
S1094V1094AgTcgCc11AY.30.00001
S1094V1094IGtcAtc11AY.30.00001
S1094V1094VgtCgtT11AY.330.000067
S1094V1094IGtcAtc11AY.340.000097
S1094V1094FGtcTtc11AY.350.000233
S1094V1094VgtCgtT11AY.350.000233
S1094V1094delGTC---11AY.360.000148
S1094V1094AgTcgCc11AY.390.000025
S1094V1094IGtcAtc11AY.39.10.00004
S1094V1094GgTcgGc11AY.40.000002
S1094V1094VgtCgtT11AY.4.50.000107
S1094V1094VgtCgtT11AY.420.00004
S1094V1094LGtcCtc11AY.430.000004
S1094V1094VgtCgtT11AY.460.000104
S1094V1094delGTC---11AY.46.20.000635
S1094V1094VgtCgtT11AY.470.000031
S1094V1094VgtCgtT11AY.510.000909
S1094V1094VgtCgtT11AY.540.000095
S1094V1094VgtCgtT11AY.550.000917
S1094V1094FGtcTtc11AY.670.000464
S1094V1094del1GtC-tT11AY.670.000464
S1094V1094VgtCgtT11AY.690.000187
S1094V1094VgtCgtT11AY.700.000209
S1094V1094IGtcAtc11AY.750.000056
S1094V1094delGTC---11AY.750.000056
S1094V1094VgtCgtT11AY.750.000056
S1094V1094IGtcAtc11AY.770.001127
S1094V1094VgtCgtT11AY.790.001211
S1094V1094VgtCgtT11AY.850.000427
S1094V1094VgtCgtA11AY.880.000884
S1094V1094VgtCgtT11AY.9.10.000084
S1094V1094FGtcTtc11AY.9.20.000037
S1094V1094VgtCgtT11AY.930.000273
S1094V1094GgTcgGc11B0.000128
S1094V1094VgtCgtT11B0.000128
S1094V1094FGtcTtc11B.10.000009
S1094V1094delGTC---11B.10.000009
S1094V1094DgTcgAc11B.1.10.000018
S1094V1094AgTcgCc11B.1.1.1410.002012
S1094V1094VgtCgtT11B.1.1.1410.002012
S1094V1094AgTcgCc11B.1.1.1760.000439
S1094V1094VgtCgtT11B.1.1.1760.000439
S1094V1094VgtCgtT11B.1.1.2070.001182
S1094V1094VgtCgtT11B.1.1.2160.00089
S1094V1094VgtCgtT11B.1.1.2200.001859
S1094V1094IGtcAtc11B.1.1.2220.000204
S1094V1094VgtCgtT11B.1.1.2770.000759
S1094V1094IGtcAtc11B.1.1.280.000311
S1094V1094DgTcgAc11B.1.1.3260.001761
S1094V1094VgtCgtA11B.1.1.3480.000796
S1094V1094VgtCgtT11B.1.1.3670.055556
S1094V1094VgtCgtT11B.1.1.4040.015873
S1094V1094IGtcAtc11B.1.1.4090.002833
S1094V1094VgtCgtT11B.1.1.430.014925
S1094V1094VgtCgtT11B.1.1.4480.002033
S1094V1094FGtcTtc11B.1.1.5190.00004
S1094V1094VgtCgtT11B.1.1.5260.003546
S1094V1094VgtCgtT11B.1.1.630.000386
S1094V1094VgtCgtT11B.1.1110.001175
S1094V1094AgTcgCc11B.1.160.140.002119
S1094V1094LGtcCtc11B.1.1770.000013
S1094V1094IGtcAtc11B.1.1770.000013
S1094V1094VgtCgtT11B.1.177.40.000211
S1094V1094AgTcgCc11B.1.177.40.000211
S1094V1094VgtCgtA11B.1.1820.007246
S1094V1094FGtcTtc11B.1.20.000009
S1094V1094LGtcCtc11B.1.20.000009
S1094V1094IGtcAtc11B.1.2210.000071
S1094V1094AgTcgCc11B.1.2400.000216
S1094V1094VgtCgtT11B.1.258.70.001912
S1094V1094VgtCgtT11B.1.3110.000275
S1094V1094IGtcAtc11B.1.3510.00003
S1094V1094FGtcTtc11B.1.3510.00003
S1094V1094VgtCgtT11B.1.351.20.000303
S1094V1094VgtCgtT11B.1.360.000146
S1094V1094VgtCgtT11B.1.36.180.00042
S1094V1094AgTcgCc11B.1.36.360.000602
S1094V1094VgtCgtT11B.1.36.80.001
S1094V1094VgtCgtT11B.1.3670.000792
S1094V1094VgtCgtT11B.1.3960.000706
S1094V1094VgtCgtT11B.1.3990.001934
S1094V1094AgTcgCc11B.1.4260.001009
S1094V1094AgTcgCc11B.1.4270.00005
S1094V1094VgtCgtT11B.1.4340.052632
S1094V1094VgtCgtA11B.1.438.10.000107
S1094V1094VgtCgtT11B.1.4710.002732
S1094V1094IGtcAtc11B.1.5150.014493
S1094V1094VgtCgtT11B.1.5170.000427
S1094V1094IGtcAtc11B.1.5260.000024
S1094V1094VgtCgtT11B.1.5490.007194
S1094V1094VgtCgtT11B.1.5820.000491
S1094V1094FGtcTtc11B.1.5880.00091
S1094V1094IGtcAtc11B.1.5950.000261
S1094V1094delGTC---11B.1.5960.000087
S1094V1094IGtcAtc11B.1.5960.000087
S1094V1094delGTC---11B.1.617.20.000004
S1094V1094SGTCTCT11B.1.617.20.000004
S1094V1094VgtCgtT11B.1.6210.000089
S1094V1094IGtcAtc11B.1.6280.000352
S1094V1094delGTC---11B.1.6300.005236
S1094V1094VgtCgtT11B.1.6300.005236
S1094V1094VgtCgtT11B.1.6310.003367
S1094V1094VgtCgtT11B.1.6370.000073
S1094V1094VgtCgtT11B.6.30.026316
S1094V1094VgtCgtT11C.160.00106
S1094V1094FGtcTtc11C.36.30.000567
S1094V1094delGTC---11C.370.000116
S1094V1094VgtCgtT11D.20.000075
S1094V1094IGtcAtc11P.10.000016
S1094V1094delGTC---11P.10.000016
S1094V1094FGtcTtc11P.1.100.000269
S1094V1094delGTC---11P.1.150.000232
S1094V1094VgtCgtT11P.1.60.001946
S1094V1094VgtCgtT11P.20.000187
S1094V1094FGtcTtc11P.20.000187
S1094V1094delGTC---11Q.20.000613
S1094V1094VgtCgtT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.