CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1083

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1083H1083YnonsynCatTat13471347124809-24811
S1083H1083HsyncaTcaC10111011124809-24811
S1083H1083DnonsynCatGat65640.98461524809-24811
S1083H1083DnonsynCaTGaC6510.015384624809-24811
S1083H1083QnonsyncaTcaA56530.94642924809-24811
S1083H1083QnonsyncaTcaG5630.053571424809-24811
S1083H1083RnonsyncAtcGt36340.94444424809-24811
S1083H1083RnonsyncATcGC3610.027777824809-24811
S1083H1083RnonsyncATcGA3610.027777824809-24811
S1083H1083NnonsynCatAat3333124809-24811
S1083H1083deldelCAT---2727124809-24811
S1083H1083PnonsyncAtcCt33124809-24811
S1083H1083GnonsynCATGGC320.66666724809-24811
S1083H1083del2delCAt--t320.66666724809-24811
S1083H1083GnonsynCATGGA310.33333324809-24811
S1083H1083del2delcATc--310.33333324809-24811
S1083H1083SnonsynCAtAGt210.524809-24811
S1083H1083SnonsynCAtTCt210.524809-24811
S1083H1083del1delcaTca-11124809-24811
S1083H1083LnonsyncAtcTt11124809-24811
S1083H1083EnonsynCaTGaA11124809-24811

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1083H1083YCatTat13471347All0.000258
S1083H1083HcaTcaC10111011All0.000193
S1083H1083YCatTat402402AY.4.20.008719
S1083H1083HcaTcaC329329C.36.30.186614
S1083H1083HcaTcaC322322C.36.3.10.875
S1083H1083YCatTat294294B.1.1.70.000263
S1083H1083HcaTcaC141141B.1.1.5260.5
S1083H1083YCatTat9696AY.440.000584
S1083H1083DCatGat6465All0.000012
S1083H1083DCaTGaC165All0
S1083H1083YCatTat6565AY.30.000647
S1083H1083DCatGat5959B.1.1.70.000053
S1083H1083QcaTcaA5356All0.00001
S1083H1083QcaTcaG356All0.000001
S1083H1083YCatTat4747AY.430.000208
S1083H1083YCatTat3939AY.40.000061
S1083H1083YCatTat3939B.1.617.20.000147
S1083H1083RcAtcGt3436All0.000007
S1083H1083RcATcGA136All0
S1083H1083RcATcGC136All0
S1083H1083NCatAat3333All0.000006
S1083H1083HcaTcaC3131B.1.1.70.000028
S1083H1083YCatTat3131B.1.20.000273
S1083H1083HcaTcaC3030B.1.617.20.000113
S1083H1083delCAT---2727All0.000005
S1083H1083HcaTcaC2424AY.1000.001104
S1083H1083YCatTat2323AY.260.000651
S1083H1083YCatTat2121B.1.360.003064
S1083H1083YCatTat1919B.1.177.100.016681
S1083H1083HcaTcaC1717AY.440.000103
S1083H1083HcaTcaC1717B.10.000156
S1083H1083YCatTat1515AY.250.00009
S1083H1083YCatTat1515B.10.000137
S1083H1083YCatTat1414AY.7.20.00783
S1083H1083YCatTat1212AY.120.10.003852
S1083H1083QcaTcaA1212B.1.36.80.012
S1083H1083HcaTcaC1111AY.1030.000068
S1083H1083QcaTcaA1010B.1.1840.588235
S1083H1083YCatTat1010P.10.000158
S1083H1083RcAtcGt99B.1.1.70.000008
S1083H1083YCatTat99P.1.10.002859
S1083H1083YCatTat99P.1.150.002091
S1083H1083YCatTat88A.270.013245
S1083H1083YCatTat88AY.1200.000297
S1083H1083NCatAat88B.1.1.70.000007
S1083H1083YCatTat77AY.1030.000043
S1083H1083YCatTat77AY.1190.000247
S1083H1083HcaTcaC77B.1.10.000127
S1083H1083YCatTat77B.1.1.5190.000278
S1083H1083QcaTcaA77B.1.4270.000353
S1083H1083YCatTat77B.1.5260.000165
S1083H1083HcaTcaC77B.1.6210.00062
S1083H1083HcaTcaC66AY.116.10.001869
S1083H1083YCatTat66AY.390.000148
S1083H1083YCatTat66B.1.2430.000418
S1083H1083YCatTat55AY.200.000194
S1083H1083HcaTcaC55AY.40.000008
S1083H1083RcAtcGt55AY.4.20.000108
S1083H1083YCatTat55AY.50.000103
S1083H1083YCatTat55B.1.10.000091
S1083H1083YCatTat55B.1.36.10.005701
S1083H1083YCatTat55B.1.4290.000118
S1083H1083YCatTat55B.1.4560.01634
S1083H1083NCatAat55B.1.617.20.000019
S1083H1083delCAT---440.222222
S1083H1083QcaTcaA44AU.30.008439
S1083H1083HcaTcaC44AY.200.000155
S1083H1083QcaTcaA44AY.250.000024
S1083H1083YCatTat44AY.290.000063
S1083H1083NCatAat44AY.40.000006
S1083H1083NCatAat44B.10.000037
S1083H1083YCatTat44B.1.1.280.001245
S1083H1083delCAT---44B.1.1.70.000004
S1083H1083YCatTat44B.1.1770.000053
S1083H1083RcAtcGt44B.1.3190.012195
S1083H1083HcaTcaC44B.1.3510.000119
S1083H1083YCatTat44B.1.5960.000349
S1083H1083YCatTat44Q.10.000505
S1083H1083PcAtcCt33All0.000001
S1083H1083GCATGGC23All0
S1083H1083del2CAt--t23All0
S1083H1083GCATGGA13All0
S1083H1083del2cATc--13All0
S1083H1083YCatTat33AY.1180.000188
S1083H1083HcaTcaC33AY.1190.000106
S1083H1083delCAT---33AY.430.000013
S1083H1083RcATcGA13AY.430.000004
S1083H1083RcATcGC13AY.430.000004
S1083H1083RcAtcGt13AY.430.000004
S1083H1083YCatTat33AY.70.000588
S1083H1083YCatTat33B.1.1.3820.107143
S1083H1083HcaTcaC33B.1.1.5190.000119
S1083H1083YCatTat33B.1.1600.000094
S1083H1083HcaTcaC33B.1.1600.000094
S1083H1083YCatTat33C.160.003181
S1083H1083DCatGat33P.1.20.003468
S1083H1083del2CAt--t220.111111
S1083H1083HcaTcaC22AD.20.000438
S1083H1083SCAtAGt12All0
S1083H1083SCAtTCt12All0
S1083H1083HcaTcaC22AY.1020.000053
S1083H1083QcaTcaA22AY.1200.000074
S1083H1083delCAT---22AY.1200.000074
S1083H1083YCatTat22AY.1210.000271
S1083H1083YCatTat22AY.230.000139
S1083H1083HcaTcaC22AY.290.000032
S1083H1083RcAtcGt22AY.30.00002
S1083H1083YCatTat22AY.34.10.00102
S1083H1083NCatAat22AY.390.000049
S1083H1083delCAT---22AY.40.000003
S1083H1083HcaTcaC22AY.4.20.000043
S1083H1083YCatTat22AY.4.40.000818
S1083H1083YCatTat22AY.420.00008
S1083H1083GCATGGA12AY.430.000004
S1083H1083GCATGGC12AY.430.000004
S1083H1083QcaTcaG12AY.440.000006
S1083H1083QcaTcaA12AY.440.000006
S1083H1083YCatTat22AY.46.40.000329
S1083H1083HcaTcaC22AY.730.001331
S1083H1083HcaTcaC22AY.740.000231
S1083H1083HcaTcaC22AY.750.000112
S1083H1083HcaTcaC22AY.770.002255
S1083H1083HcaTcaC22AY.9.10.000167
S1083H1083HcaTcaC22AY.99.20.000184
S1083H1083YCatTat22B0.000256
S1083H1083NCatAat22B.1.10.000036
S1083H1083HcaTcaC22B.1.1.2940.002532
S1083H1083RcAtcGt22B.1.1.3050.007722
S1083H1083YCatTat22B.1.1.390.001019
S1083H1083YCatTat22B.1.1.3970.004505
S1083H1083HcaTcaC22B.1.1770.000026
S1083H1083YCatTat22B.1.177.860.000367
S1083H1083QcaTcaA22B.1.20.000018
S1083H1083YCatTat22B.1.2790.001027
S1083H1083YCatTat22B.1.4650.007605
S1083H1083YCatTat22B.1.5250.000226
S1083H1083delCAT---22B.1.617.20.000008
S1083H1083QcaTcaA22B.1.617.20.000008
S1083H1083RcAtcGt22B.1.617.20.000008
S1083H1083QcaTcaG12B.460.020833
S1083H1083QcaTcaA12B.460.020833
S1083H1083QcaTcaA110.055556
S1083H1083ECaTGaA11All0
S1083H1083del1caTca-11All0
S1083H1083LcAtcTt11All0
S1083H1083HcaTcaC11AY.1010.00049
S1083H1083YCatTat11AY.1020.000027
S1083H1083YCatTat11AY.1050.000643
S1083H1083HcaTcaC11AY.1060.000335
S1083H1083HcaTcaC11AY.1130.000142
S1083H1083RcAtcGt11AY.1180.000063
S1083H1083YCatTat11AY.130.000161
S1083H1083YCatTat11AY.140.000088
S1083H1083RcAtcGt11AY.16.10.00047
S1083H1083HcaTcaC11AY.20.000356
S1083H1083NCatAat11AY.250.000006
S1083H1083RcAtcGt11AY.250.000006
S1083H1083HcaTcaC11AY.250.000006
S1083H1083HcaTcaC11AY.260.000028
S1083H1083YCatTat11AY.270.000065
S1083H1083NCatAat11AY.30.00001
S1083H1083HcaTcaC11AY.3.10.000085
S1083H1083delCAT---11AY.360.000148
S1083H1083HcaTcaC11AY.360.000148
S1083H1083YCatTat11AY.360.000148
S1083H1083DCatGat11AY.40.000002
S1083H1083RcAtcGt11AY.40.000002
S1083H1083QcaTcaA11AY.40.000002
S1083H1083LcAtcTt11AY.40.000002
S1083H1083delCAT---11AY.4.50.000107
S1083H1083HcaTcaC11AY.430.000004
S1083H1083DCaTGaC11AY.430.000004
S1083H1083ECaTGaA11AY.430.000004
S1083H1083QcaTcaA11AY.430.000004
S1083H1083del2cATc--11AY.430.000004
S1083H1083RcAtcGt11AY.440.000006
S1083H1083HcaTcaC11AY.450.000122
S1083H1083HcaTcaC11AY.460.000104
S1083H1083YCatTat11AY.460.000104
S1083H1083delCAT---11AY.46.20.000635
S1083H1083PcAtcCt11AY.470.000031
S1083H1083NCatAat11AY.470.000031
S1083H1083YCatTat11AY.470.000031
S1083H1083YCatTat11AY.60.000041
S1083H1083YCatTat11AY.610.000105
S1083H1083delCAT---11AY.670.000464
S1083H1083GCATGGC11AY.670.000464
S1083H1083HcaTcaC11AY.670.000464
S1083H1083YCatTat11AY.690.000187
S1083H1083YCatTat11AY.700.000209
S1083H1083HcaTcaC11AY.700.000209
S1083H1083NCatAat11AY.750.000056
S1083H1083delCAT---11AY.750.000056
S1083H1083YCatTat11AY.780.001541
S1083H1083YCatTat11AY.80.000606
S1083H1083HcaTcaC11AY.98.10.000048
S1083H1083YCatTat11AZ.50.003509
S1083H1083RcAtcGt11B0.000128
S1083H1083delCAT---11B.10.000009
S1083H1083QcaTcaA11B.10.000009
S1083H1083RcAtcGt11B.10.000009
S1083H1083QcaTcaA11B.1.10.000018
S1083H1083RcAtcGt11B.1.10.000018
S1083H1083SCAtTCt11B.1.10.000018
S1083H1083HcaTcaC11B.1.1.10.000327
S1083H1083RcAtcGt11B.1.1.2140.000055
S1083H1083YCatTat11B.1.1.250.000569
S1083H1083HcaTcaC11B.1.1.250.000569
S1083H1083YCatTat11B.1.1.2840.000107
S1083H1083PcAtcCt11B.1.1.3000.010753
S1083H1083YCatTat11B.1.1.3290.003846
S1083H1083DCatGat11B.1.1.330.000421
S1083H1083HcaTcaC11B.1.1.390.00051
S1083H1083YCatTat11B.1.1.5230.001563
S1083H1083del1caTca-11B.1.1.70.000001
S1083H1083PcAtcCt11B.1.1.70.000001
S1083H1083YCatTat11B.1.1.700.000341
S1083H1083YCatTat11B.1.1460.004237
S1083H1083YCatTat11B.1.1470.000756
S1083H1083NCatAat11B.1.160.260.002421
S1083H1083NCatAat11B.1.1770.000013
S1083H1083HcaTcaC11B.1.177.120.000152
S1083H1083YCatTat11B.1.177.360.016129
S1083H1083YCatTat11B.1.177.600.000218
S1083H1083YCatTat11B.1.177.70.000165
S1083H1083YCatTat11B.1.2210.000071
S1083H1083YCatTat11B.1.3380.008621
S1083H1083delCAT---11B.1.3510.00003
S1083H1083NCatAat11B.1.3510.00003
S1083H1083YCatTat11B.1.36.350.002604
S1083H1083YCatTat11B.1.3960.000706
S1083H1083YCatTat11B.1.4160.001269
S1083H1083HcaTcaC11B.1.4290.000024
S1083H1083YCatTat11B.1.4590.004082
S1083H1083HcaTcaC11B.1.466.20.000391
S1083H1083YCatTat11B.1.5170.000427
S1083H1083YCatTat11B.1.5950.000261
S1083H1083YCatTat11B.1.617.10.000129
S1083H1083SCAtAGt11B.1.617.20.000004
S1083H1083YCatTat11B.1.621.10.000506
S1083H1083HcaTcaC11B.1.6300.005236
S1083H1083YCatTat11B.1.6360.006711
S1083H1083QcaTcaG11B.1.6370.000073
S1083H1083QcaTcaA11B.1.830.015385
S1083H1083YCatTat11B.1.940.027027
S1083H1083YCatTat11B.550.00295
S1083H1083HcaTcaC11C.360.000911
S1083H1083delCAT---11C.370.000116
S1083H1083YCatTat11C.370.000116
S1083H1083HcaTcaC11C.390.018868
S1083H1083QcaTcaA11D.20.000075
S1083H1083delCAT---11P.10.000016
S1083H1083delCAT---11P.1.150.000232
S1083H1083NCatAat11P.20.000187
S1083H1083YCatTat11P.40.003802
S1083H1083QcaTcaA11Q.80.000165