CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1083 | H1083Y | nonsyn | Cat | Tat | 1347 | 1347 | 1 | 24809-24811 | |
S | 1083 | H1083H | syn | caT | caC | 1011 | 1011 | 1 | 24809-24811 | |
S | 1083 | H1083D | nonsyn | Cat | Gat | 65 | 64 | 0.984615 | 24809-24811 | |
S | 1083 | H1083D | nonsyn | CaT | GaC | 65 | 1 | 0.0153846 | 24809-24811 | |
S | 1083 | H1083Q | nonsyn | caT | caA | 56 | 53 | 0.946429 | 24809-24811 | |
S | 1083 | H1083Q | nonsyn | caT | caG | 56 | 3 | 0.0535714 | 24809-24811 | |
S | 1083 | H1083R | nonsyn | cAt | cGt | 36 | 34 | 0.944444 | 24809-24811 | |
S | 1083 | H1083R | nonsyn | cAT | cGC | 36 | 1 | 0.0277778 | 24809-24811 | |
S | 1083 | H1083R | nonsyn | cAT | cGA | 36 | 1 | 0.0277778 | 24809-24811 | |
S | 1083 | H1083N | nonsyn | Cat | Aat | 33 | 33 | 1 | 24809-24811 | |
S | 1083 | H1083del | del | CAT | --- | 27 | 27 | 1 | 24809-24811 | |
S | 1083 | H1083P | nonsyn | cAt | cCt | 3 | 3 | 1 | 24809-24811 | |
S | 1083 | H1083G | nonsyn | CAT | GGC | 3 | 2 | 0.666667 | 24809-24811 | |
S | 1083 | H1083del2 | del | CAt | --t | 3 | 2 | 0.666667 | 24809-24811 | |
S | 1083 | H1083G | nonsyn | CAT | GGA | 3 | 1 | 0.333333 | 24809-24811 | |
S | 1083 | H1083del2 | del | cAT | c-- | 3 | 1 | 0.333333 | 24809-24811 | |
S | 1083 | H1083S | nonsyn | CAt | AGt | 2 | 1 | 0.5 | 24809-24811 | |
S | 1083 | H1083S | nonsyn | CAt | TCt | 2 | 1 | 0.5 | 24809-24811 | |
S | 1083 | H1083del1 | del | caT | ca- | 1 | 1 | 1 | 24809-24811 | |
S | 1083 | H1083L | nonsyn | cAt | cTt | 1 | 1 | 1 | 24809-24811 | |
S | 1083 | H1083E | nonsyn | CaT | GaA | 1 | 1 | 1 | 24809-24811 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1083 | H1083Y | Cat | Tat | 1347 | 1347 | All | 0.000258 |
S | 1083 | H1083H | caT | caC | 1011 | 1011 | All | 0.000193 |
S | 1083 | H1083Y | Cat | Tat | 402 | 402 | AY.4.2 | 0.008719 |
S | 1083 | H1083H | caT | caC | 329 | 329 | C.36.3 | 0.186614 |
S | 1083 | H1083H | caT | caC | 322 | 322 | C.36.3.1 | 0.875 |
S | 1083 | H1083Y | Cat | Tat | 294 | 294 | B.1.1.7 | 0.000263 |
S | 1083 | H1083H | caT | caC | 141 | 141 | B.1.1.526 | 0.5 |
S | 1083 | H1083Y | Cat | Tat | 96 | 96 | AY.44 | 0.000584 |
S | 1083 | H1083D | Cat | Gat | 64 | 65 | All | 0.000012 |
S | 1083 | H1083D | CaT | GaC | 1 | 65 | All | 0 |
S | 1083 | H1083Y | Cat | Tat | 65 | 65 | AY.3 | 0.000647 |
S | 1083 | H1083D | Cat | Gat | 59 | 59 | B.1.1.7 | 0.000053 |
S | 1083 | H1083Q | caT | caA | 53 | 56 | All | 0.00001 |
S | 1083 | H1083Q | caT | caG | 3 | 56 | All | 0.000001 |
S | 1083 | H1083Y | Cat | Tat | 47 | 47 | AY.43 | 0.000208 |
S | 1083 | H1083Y | Cat | Tat | 39 | 39 | AY.4 | 0.000061 |
S | 1083 | H1083Y | Cat | Tat | 39 | 39 | B.1.617.2 | 0.000147 |
S | 1083 | H1083R | cAt | cGt | 34 | 36 | All | 0.000007 |
S | 1083 | H1083R | cAT | cGA | 1 | 36 | All | 0 |
S | 1083 | H1083R | cAT | cGC | 1 | 36 | All | 0 |
S | 1083 | H1083N | Cat | Aat | 33 | 33 | All | 0.000006 |
S | 1083 | H1083H | caT | caC | 31 | 31 | B.1.1.7 | 0.000028 |
S | 1083 | H1083Y | Cat | Tat | 31 | 31 | B.1.2 | 0.000273 |
S | 1083 | H1083H | caT | caC | 30 | 30 | B.1.617.2 | 0.000113 |
S | 1083 | H1083del | CAT | --- | 27 | 27 | All | 0.000005 |
S | 1083 | H1083H | caT | caC | 24 | 24 | AY.100 | 0.001104 |
S | 1083 | H1083Y | Cat | Tat | 23 | 23 | AY.26 | 0.000651 |
S | 1083 | H1083Y | Cat | Tat | 21 | 21 | B.1.36 | 0.003064 |
S | 1083 | H1083Y | Cat | Tat | 19 | 19 | B.1.177.10 | 0.016681 |
S | 1083 | H1083H | caT | caC | 17 | 17 | AY.44 | 0.000103 |
S | 1083 | H1083H | caT | caC | 17 | 17 | B.1 | 0.000156 |
S | 1083 | H1083Y | Cat | Tat | 15 | 15 | AY.25 | 0.00009 |
S | 1083 | H1083Y | Cat | Tat | 15 | 15 | B.1 | 0.000137 |
S | 1083 | H1083Y | Cat | Tat | 14 | 14 | AY.7.2 | 0.00783 |
S | 1083 | H1083Y | Cat | Tat | 12 | 12 | AY.120.1 | 0.003852 |
S | 1083 | H1083Q | caT | caA | 12 | 12 | B.1.36.8 | 0.012 |
S | 1083 | H1083H | caT | caC | 11 | 11 | AY.103 | 0.000068 |
S | 1083 | H1083Q | caT | caA | 10 | 10 | B.1.184 | 0.588235 |
S | 1083 | H1083Y | Cat | Tat | 10 | 10 | P.1 | 0.000158 |
S | 1083 | H1083R | cAt | cGt | 9 | 9 | B.1.1.7 | 0.000008 |
S | 1083 | H1083Y | Cat | Tat | 9 | 9 | P.1.1 | 0.002859 |
S | 1083 | H1083Y | Cat | Tat | 9 | 9 | P.1.15 | 0.002091 |
S | 1083 | H1083Y | Cat | Tat | 8 | 8 | A.27 | 0.013245 |
S | 1083 | H1083Y | Cat | Tat | 8 | 8 | AY.120 | 0.000297 |
S | 1083 | H1083N | Cat | Aat | 8 | 8 | B.1.1.7 | 0.000007 |
S | 1083 | H1083Y | Cat | Tat | 7 | 7 | AY.103 | 0.000043 |
S | 1083 | H1083Y | Cat | Tat | 7 | 7 | AY.119 | 0.000247 |
S | 1083 | H1083H | caT | caC | 7 | 7 | B.1.1 | 0.000127 |
S | 1083 | H1083Y | Cat | Tat | 7 | 7 | B.1.1.519 | 0.000278 |
S | 1083 | H1083Q | caT | caA | 7 | 7 | B.1.427 | 0.000353 |
S | 1083 | H1083Y | Cat | Tat | 7 | 7 | B.1.526 | 0.000165 |
S | 1083 | H1083H | caT | caC | 7 | 7 | B.1.621 | 0.00062 |
S | 1083 | H1083H | caT | caC | 6 | 6 | AY.116.1 | 0.001869 |
S | 1083 | H1083Y | Cat | Tat | 6 | 6 | AY.39 | 0.000148 |
S | 1083 | H1083Y | Cat | Tat | 6 | 6 | B.1.243 | 0.000418 |
S | 1083 | H1083Y | Cat | Tat | 5 | 5 | AY.20 | 0.000194 |
S | 1083 | H1083H | caT | caC | 5 | 5 | AY.4 | 0.000008 |
S | 1083 | H1083R | cAt | cGt | 5 | 5 | AY.4.2 | 0.000108 |
S | 1083 | H1083Y | Cat | Tat | 5 | 5 | AY.5 | 0.000103 |
S | 1083 | H1083Y | Cat | Tat | 5 | 5 | B.1.1 | 0.000091 |
S | 1083 | H1083Y | Cat | Tat | 5 | 5 | B.1.36.1 | 0.005701 |
S | 1083 | H1083Y | Cat | Tat | 5 | 5 | B.1.429 | 0.000118 |
S | 1083 | H1083Y | Cat | Tat | 5 | 5 | B.1.456 | 0.01634 |
S | 1083 | H1083N | Cat | Aat | 5 | 5 | B.1.617.2 | 0.000019 |
S | 1083 | H1083del | CAT | --- | 4 | 4 | 0.222222 | |
S | 1083 | H1083Q | caT | caA | 4 | 4 | AU.3 | 0.008439 |
S | 1083 | H1083H | caT | caC | 4 | 4 | AY.20 | 0.000155 |
S | 1083 | H1083Q | caT | caA | 4 | 4 | AY.25 | 0.000024 |
S | 1083 | H1083Y | Cat | Tat | 4 | 4 | AY.29 | 0.000063 |
S | 1083 | H1083N | Cat | Aat | 4 | 4 | AY.4 | 0.000006 |
S | 1083 | H1083N | Cat | Aat | 4 | 4 | B.1 | 0.000037 |
S | 1083 | H1083Y | Cat | Tat | 4 | 4 | B.1.1.28 | 0.001245 |
S | 1083 | H1083del | CAT | --- | 4 | 4 | B.1.1.7 | 0.000004 |
S | 1083 | H1083Y | Cat | Tat | 4 | 4 | B.1.177 | 0.000053 |
S | 1083 | H1083R | cAt | cGt | 4 | 4 | B.1.319 | 0.012195 |
S | 1083 | H1083H | caT | caC | 4 | 4 | B.1.351 | 0.000119 |
S | 1083 | H1083Y | Cat | Tat | 4 | 4 | B.1.596 | 0.000349 |
S | 1083 | H1083Y | Cat | Tat | 4 | 4 | Q.1 | 0.000505 |
S | 1083 | H1083P | cAt | cCt | 3 | 3 | All | 0.000001 |
S | 1083 | H1083G | CAT | GGC | 2 | 3 | All | 0 |
S | 1083 | H1083del2 | CAt | --t | 2 | 3 | All | 0 |
S | 1083 | H1083G | CAT | GGA | 1 | 3 | All | 0 |
S | 1083 | H1083del2 | cAT | c-- | 1 | 3 | All | 0 |
S | 1083 | H1083Y | Cat | Tat | 3 | 3 | AY.118 | 0.000188 |
S | 1083 | H1083H | caT | caC | 3 | 3 | AY.119 | 0.000106 |
S | 1083 | H1083del | CAT | --- | 3 | 3 | AY.43 | 0.000013 |
S | 1083 | H1083R | cAT | cGA | 1 | 3 | AY.43 | 0.000004 |
S | 1083 | H1083R | cAT | cGC | 1 | 3 | AY.43 | 0.000004 |
S | 1083 | H1083R | cAt | cGt | 1 | 3 | AY.43 | 0.000004 |
S | 1083 | H1083Y | Cat | Tat | 3 | 3 | AY.7 | 0.000588 |
S | 1083 | H1083Y | Cat | Tat | 3 | 3 | B.1.1.382 | 0.107143 |
S | 1083 | H1083H | caT | caC | 3 | 3 | B.1.1.519 | 0.000119 |
S | 1083 | H1083Y | Cat | Tat | 3 | 3 | B.1.160 | 0.000094 |
S | 1083 | H1083H | caT | caC | 3 | 3 | B.1.160 | 0.000094 |
S | 1083 | H1083Y | Cat | Tat | 3 | 3 | C.16 | 0.003181 |
S | 1083 | H1083D | Cat | Gat | 3 | 3 | P.1.2 | 0.003468 |
S | 1083 | H1083del2 | CAt | --t | 2 | 2 | 0.111111 | |
S | 1083 | H1083H | caT | caC | 2 | 2 | AD.2 | 0.000438 |
S | 1083 | H1083S | CAt | AGt | 1 | 2 | All | 0 |
S | 1083 | H1083S | CAt | TCt | 1 | 2 | All | 0 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.102 | 0.000053 |
S | 1083 | H1083Q | caT | caA | 2 | 2 | AY.120 | 0.000074 |
S | 1083 | H1083del | CAT | --- | 2 | 2 | AY.120 | 0.000074 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | AY.121 | 0.000271 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | AY.23 | 0.000139 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.29 | 0.000032 |
S | 1083 | H1083R | cAt | cGt | 2 | 2 | AY.3 | 0.00002 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | AY.34.1 | 0.00102 |
S | 1083 | H1083N | Cat | Aat | 2 | 2 | AY.39 | 0.000049 |
S | 1083 | H1083del | CAT | --- | 2 | 2 | AY.4 | 0.000003 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.4.2 | 0.000043 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | AY.4.4 | 0.000818 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | AY.42 | 0.00008 |
S | 1083 | H1083G | CAT | GGA | 1 | 2 | AY.43 | 0.000004 |
S | 1083 | H1083G | CAT | GGC | 1 | 2 | AY.43 | 0.000004 |
S | 1083 | H1083Q | caT | caG | 1 | 2 | AY.44 | 0.000006 |
S | 1083 | H1083Q | caT | caA | 1 | 2 | AY.44 | 0.000006 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | AY.46.4 | 0.000329 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.73 | 0.001331 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.74 | 0.000231 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.75 | 0.000112 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.77 | 0.002255 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.9.1 | 0.000167 |
S | 1083 | H1083H | caT | caC | 2 | 2 | AY.99.2 | 0.000184 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | B | 0.000256 |
S | 1083 | H1083N | Cat | Aat | 2 | 2 | B.1.1 | 0.000036 |
S | 1083 | H1083H | caT | caC | 2 | 2 | B.1.1.294 | 0.002532 |
S | 1083 | H1083R | cAt | cGt | 2 | 2 | B.1.1.305 | 0.007722 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | B.1.1.39 | 0.001019 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | B.1.1.397 | 0.004505 |
S | 1083 | H1083H | caT | caC | 2 | 2 | B.1.177 | 0.000026 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | B.1.177.86 | 0.000367 |
S | 1083 | H1083Q | caT | caA | 2 | 2 | B.1.2 | 0.000018 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | B.1.279 | 0.001027 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | B.1.465 | 0.007605 |
S | 1083 | H1083Y | Cat | Tat | 2 | 2 | B.1.525 | 0.000226 |
S | 1083 | H1083del | CAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 1083 | H1083Q | caT | caA | 2 | 2 | B.1.617.2 | 0.000008 |
S | 1083 | H1083R | cAt | cGt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 1083 | H1083Q | caT | caG | 1 | 2 | B.46 | 0.020833 |
S | 1083 | H1083Q | caT | caA | 1 | 2 | B.46 | 0.020833 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | 0.055556 | |
S | 1083 | H1083E | CaT | GaA | 1 | 1 | All | 0 |
S | 1083 | H1083del1 | caT | ca- | 1 | 1 | All | 0 |
S | 1083 | H1083L | cAt | cTt | 1 | 1 | All | 0 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.101 | 0.00049 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.102 | 0.000027 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.105 | 0.000643 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.106 | 0.000335 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.113 | 0.000142 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | AY.118 | 0.000063 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.13 | 0.000161 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.14 | 0.000088 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | AY.16.1 | 0.00047 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.2 | 0.000356 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | AY.25 | 0.000006 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | AY.25 | 0.000006 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.25 | 0.000006 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.26 | 0.000028 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.27 | 0.000065 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | AY.3 | 0.00001 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.3.1 | 0.000085 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | AY.36 | 0.000148 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.36 | 0.000148 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.36 | 0.000148 |
S | 1083 | H1083D | Cat | Gat | 1 | 1 | AY.4 | 0.000002 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | AY.4 | 0.000002 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | AY.4 | 0.000002 |
S | 1083 | H1083L | cAt | cTt | 1 | 1 | AY.4 | 0.000002 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.43 | 0.000004 |
S | 1083 | H1083D | CaT | GaC | 1 | 1 | AY.43 | 0.000004 |
S | 1083 | H1083E | CaT | GaA | 1 | 1 | AY.43 | 0.000004 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | AY.43 | 0.000004 |
S | 1083 | H1083del2 | cAT | c-- | 1 | 1 | AY.43 | 0.000004 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | AY.44 | 0.000006 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.45 | 0.000122 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.46 | 0.000104 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.46 | 0.000104 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 1083 | H1083P | cAt | cCt | 1 | 1 | AY.47 | 0.000031 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | AY.47 | 0.000031 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.47 | 0.000031 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.6 | 0.000041 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.61 | 0.000105 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 1083 | H1083G | CAT | GGC | 1 | 1 | AY.67 | 0.000464 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.67 | 0.000464 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.70 | 0.000209 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.70 | 0.000209 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | AY.75 | 0.000056 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | AY.75 | 0.000056 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.78 | 0.001541 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AY.8 | 0.000606 |
S | 1083 | H1083H | caT | caC | 1 | 1 | AY.98.1 | 0.000048 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | AZ.5 | 0.003509 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | B | 0.000128 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | B.1 | 0.000009 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | B.1 | 0.000009 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | B.1 | 0.000009 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | B.1.1 | 0.000018 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | B.1.1 | 0.000018 |
S | 1083 | H1083S | CAt | TCt | 1 | 1 | B.1.1 | 0.000018 |
S | 1083 | H1083H | caT | caC | 1 | 1 | B.1.1.1 | 0.000327 |
S | 1083 | H1083R | cAt | cGt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.1.25 | 0.000569 |
S | 1083 | H1083H | caT | caC | 1 | 1 | B.1.1.25 | 0.000569 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.1.284 | 0.000107 |
S | 1083 | H1083P | cAt | cCt | 1 | 1 | B.1.1.300 | 0.010753 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.1.329 | 0.003846 |
S | 1083 | H1083D | Cat | Gat | 1 | 1 | B.1.1.33 | 0.000421 |
S | 1083 | H1083H | caT | caC | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.1.523 | 0.001563 |
S | 1083 | H1083del1 | caT | ca- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1083 | H1083P | cAt | cCt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.146 | 0.004237 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.147 | 0.000756 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | B.1.160.26 | 0.002421 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | B.1.177 | 0.000013 |
S | 1083 | H1083H | caT | caC | 1 | 1 | B.1.177.12 | 0.000152 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.177.36 | 0.016129 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.177.60 | 0.000218 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.221 | 0.000071 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.338 | 0.008621 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | B.1.351 | 0.00003 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.36.35 | 0.002604 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.396 | 0.000706 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.416 | 0.001269 |
S | 1083 | H1083H | caT | caC | 1 | 1 | B.1.429 | 0.000024 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.459 | 0.004082 |
S | 1083 | H1083H | caT | caC | 1 | 1 | B.1.466.2 | 0.000391 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.517 | 0.000427 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.595 | 0.000261 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.617.1 | 0.000129 |
S | 1083 | H1083S | CAt | AGt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.621.1 | 0.000506 |
S | 1083 | H1083H | caT | caC | 1 | 1 | B.1.630 | 0.005236 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.636 | 0.006711 |
S | 1083 | H1083Q | caT | caG | 1 | 1 | B.1.637 | 0.000073 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | B.1.83 | 0.015385 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.1.94 | 0.027027 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | B.55 | 0.00295 |
S | 1083 | H1083H | caT | caC | 1 | 1 | C.36 | 0.000911 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | C.37 | 0.000116 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | C.37 | 0.000116 |
S | 1083 | H1083H | caT | caC | 1 | 1 | C.39 | 0.018868 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | D.2 | 0.000075 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | P.1 | 0.000016 |
S | 1083 | H1083del | CAT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1083 | H1083N | Cat | Aat | 1 | 1 | P.2 | 0.000187 |
S | 1083 | H1083Y | Cat | Tat | 1 | 1 | P.4 | 0.003802 |
S | 1083 | H1083Q | caT | caA | 1 | 1 | Q.8 | 0.000165 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|