CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1081

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1081I1081IsynatTatC3733510.94101924803-24805
S1081I1081IsynatTatA373220.058981224803-24805
S1081I1081VnonsynAttGtt1791780.99441324803-24805
S1081I1081VnonsynAtTGtC17910.0055865924803-24805
S1081I1081FnonsynAttTtt51500.98039224803-24805
S1081I1081FnonsynAtTTtC5110.019607824803-24805
S1081I1081LnonsynAttCtt4343124803-24805
S1081I1081TnonsynaTtaCt29260.89655224803-24805
S1081I1081TnonsynaTTaCC2930.10344824803-24805
S1081I1081deldelATT---2222124803-24805
S1081I1081MnonsynatTatG1616124803-24805
S1081I1081SnonsynaTtaGt630.524803-24805
S1081I1081SnonsynATtTCt620.33333324803-24805
S1081I1081SnonsynATTTCC610.16666724803-24805
S1081I1081AnonsynATtGCt320.66666724803-24805
S1081I1081AnonsynATTGCC310.33333324803-24805
S1081I1081NnonsynaTtaAt22124803-24805
S1081I1081del1delaTta-t210.524803-24805
S1081I1081del1delAtT-tC210.524803-24805
S1081I1081KnonsynaTTaAG11124803-24805

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1081I1081IatTatC351373All0.000067
S1081I1081IatTatA22373All0.000004
S1081I1081IatTatC223223B.1.5050.97807
S1081I1081VAttGtt178179All0.000034
S1081I1081VAtTGtC1179All0
S1081I1081FAttTtt5051All0.00001
S1081I1081FAtTTtC151All0
S1081I1081VAttGtt4646AY.1000.002116
S1081I1081LAttCtt4343All0.000008
S1081I1081IatTatA1933B.1.1.70.000017
S1081I1081IatTatC1433B.1.1.70.000013
S1081I1081LAttCtt3030B.1.1.70.000027
S1081I1081TaTtaCt2629All0.000005
S1081I1081TaTTaCC329All0.000001
S1081I1081delATT---2222All0.000004
S1081I1081IatTatC2222AY.420.000885
S1081I1081VAttGtt2020AY.40.000031
S1081I1081IatTatC1717AY.1030.000106
S1081I1081VAttGtt1717B.1.2340.002243
S1081I1081MatTatG1616All0.000003
S1081I1081TaTtaCt1414AY.920.004022
S1081I1081IatTatC1414B.1.2210.000994
S1081I1081IatTatC1313AY.230.000907
S1081I1081VAttGtt1313B.1.4270.000656
S1081I1081VAttGtt1212B.1.1.70.000011
S1081I1081IatTatC1212B.1.617.20.000045
S1081I1081FAttTtt99AY.260.000255
S1081I1081VAttGtt99AY.440.000055
S1081I1081VAttGtt99B.1.617.20.000034
S1081I1081SaTtaGt36All0.000001
S1081I1081SATtTCt26All0
S1081I1081SATTTCC16All0
S1081I1081FAttTtt66B.1.1.70.000005
S1081I1081IatTatC55AY.1110.000916
S1081I1081MatTatG55AY.230.000349
S1081I1081VAttGtt55AY.250.00003
S1081I1081VAttGtt55AY.30.00005
S1081I1081VAttGtt55B.1.1600.000156
S1081I1081TaTTaCC340.166667
S1081I1081SaTtaGt240.111111
S1081I1081SATtTCt140.055556
S1081I1081TaTtaCt140.055556
S1081I1081SATTTCC140.055556
S1081I1081IatTatC44AY.430.000018
S1081I1081LAttCtt44AY.46.50.000794
S1081I1081LAttCtt44AY.610.000419
S1081I1081VAttGtt44B.1.1.700.001364
S1081I1081MatTatG44B.1.1770.000053
S1081I1081FAttTtt44B.1.221.20.016064
S1081I1081AATtGCt23All0
S1081I1081AATTGCC13All0
S1081I1081IatTatC33AY.250.000018
S1081I1081VAttGtt33AY.390.000074
S1081I1081IatTatC33AY.40.000005
S1081I1081FAttTtt33AY.40.000005
S1081I1081delATT---33AY.430.000013
S1081I1081IatTatC33B.10.000027
S1081I1081delATT---33B.1.1.70.000003
S1081I1081VAttGtt33B.1.160.160.002788
S1081I1081FAttTtt33B.1.617.20.000011
S1081I1081delATT---220.111111
S1081I1081VAttGtt120.055556
S1081I1081FAttTtt120.055556
S1081I1081FAtTTtC120.055556
S1081I1081VAtTGtC120.055556
S1081I1081AATtGCt120.055556
S1081I1081AATTGCC120.055556
S1081I1081IatTatA22AD.20.000438
S1081I1081NaTtaAt22All0
S1081I1081del1aTta-t12All0
S1081I1081del1AtT-tC12All0
S1081I1081VAttGtt22AY.1030.000012
S1081I1081FAttTtt22AY.1140.000462
S1081I1081delATT---22AY.1200.000074
S1081I1081FAttTtt22AY.30.00002
S1081I1081delATT---22AY.40.000003
S1081I1081VAttGtt22AY.430.000009
S1081I1081FAttTtt22AY.430.000009
S1081I1081IatTatC22AY.750.000112
S1081I1081MatTatG22B.10.000018
S1081I1081FAttTtt22B.10.000018
S1081I1081FAttTtt22B.1.10.000036
S1081I1081VAttGtt22B.1.1.3060.000877
S1081I1081VAttGtt22B.1.1.5190.000079
S1081I1081MatTatG22B.1.1.70.000002
S1081I1081FAttTtt22B.1.110.30.001437
S1081I1081FAttTtt22B.1.20.000018
S1081I1081FAttTtt22B.1.5260.000047
S1081I1081MatTatG22B.1.5950.000522
S1081I1081delATT---22B.1.617.20.000008
S1081I1081LAttCtt22B.1.617.20.000008
S1081I1081TaTtaCt22B.1.6370.000146
S1081I1081IatTatC110.055556
S1081I1081VAttGtt11AD.20.000219
S1081I1081KaTTaAG11All0
S1081I1081TaTtaCt11AY.1000.000046
S1081I1081FAttTtt11AY.1020.000027
S1081I1081VAttGtt11AY.1020.000027
S1081I1081IatTatC11AY.1190.000035
S1081I1081VAttGtt11AY.16.10.00047
S1081I1081VAttGtt11AY.190.00114
S1081I1081LAttCtt11AY.250.000006
S1081I1081VAttGtt11AY.290.000016
S1081I1081IatTatC11AY.330.000067
S1081I1081delATT---11AY.360.000148
S1081I1081LAttCtt11AY.40.000002
S1081I1081IatTatC11AY.4.20.000022
S1081I1081VAttGtt11AY.4.40.000409
S1081I1081VAttGtt11AY.420.00004
S1081I1081TaTtaCt11AY.430.000004
S1081I1081AATtGCt11AY.430.000004
S1081I1081FAttTtt11AY.440.000006
S1081I1081IatTatC11AY.440.000006
S1081I1081TaTtaCt11AY.440.000006
S1081I1081delATT---11AY.46.20.000635
S1081I1081IatTatC11AY.46.20.000635
S1081I1081IatTatC11AY.470.000031
S1081I1081FAttTtt11AY.5.30.000337
S1081I1081VAttGtt11AY.530.000288
S1081I1081FAttTtt11AY.530.000288
S1081I1081SATtTCt11AY.670.000464
S1081I1081TaTtaCt11AY.7.10.000113
S1081I1081delATT---11AY.750.000056
S1081I1081LAttCtt11AY.750.000056
S1081I1081TaTtaCt11AY.9.20.000037
S1081I1081NaTtaAt11B0.000128
S1081I1081VAttGtt11B.10.000009
S1081I1081SaTtaGt11B.10.000009
S1081I1081delATT---11B.10.000009
S1081I1081TaTtaCt11B.10.000009
S1081I1081IatTatA11B.1.10.000018
S1081I1081KaTTaAG11B.1.10.000018
S1081I1081IatTatC11B.1.1.2430.004082
S1081I1081VAttGtt11B.1.177.210.000076
S1081I1081IatTatC11B.1.1820.007246
S1081I1081VAttGtt11B.1.20.000009
S1081I1081MatTatG11B.1.2210.000071
S1081I1081FAttTtt11B.1.2210.000071
S1081I1081VAttGtt11B.1.258.170.000104
S1081I1081VAttGtt11B.1.3510.00003
S1081I1081delATT---11B.1.3510.00003
S1081I1081IatTatC11B.1.3510.00003
S1081I1081VAttGtt11B.1.351.50.0006
S1081I1081TaTtaCt11B.1.36.220.001208
S1081I1081TaTtaCt11B.1.3750.00082
S1081I1081VAttGtt11B.1.3930.028571
S1081I1081VAttGtt11B.1.5260.000024
S1081I1081VAttGtt11B.1.5510.00129
S1081I1081del1aTta-t11B.1.5950.000261
S1081I1081del1AtT-tC11B.1.5960.000087
S1081I1081FAttTtt11B.1.5960.000087
S1081I1081TaTtaCt11B.1.617.20.000004
S1081I1081IatTatC11B.1.6210.000089
S1081I1081FAttTtt11B.1.621.10.000506
S1081I1081IatTatC11B.1.6300.005236
S1081I1081VAttGtt11B.1.6370.000073
S1081I1081IatTatC11B.1.6370.000073
S1081I1081IatTatC11B.400.000364
S1081I1081delATT---11C.370.000116
S1081I1081FAttTtt11D.20.000075
S1081I1081delATT---11P.10.000016
S1081I1081IatTatC11P.10.000016
S1081I1081delATT---11P.1.150.000232
S1081I1081NaTtaAt11P.1.150.000232
S1081I1081IatTatC11Q.30.000145