CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1073 & Codon = aGg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	1073	K1073R		nonsyn	aAg	aGg	151	151	1	24779-24781

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	1073	K1073R	aAg	aGg	151	151	All	0.000029
S	1073	K1073R	aAg	aGg	55	55	B.1.1.7	0.000049
S	1073	K1073R	aAg	aGg	11	11	B.1.177	0.000145
S	1073	K1073R	aAg	aGg	9	9	B.1.1.519	0.000357
S	1073	K1073R	aAg	aGg	6	6	AY.43	0.000027
S	1073	K1073R	aAg	aGg	5	5	B.1	0.000046
S	1073	K1073R	aAg	aGg	5	5	B.1.617.2	0.000019
S	1073	K1073R	aAg	aGg	4	4	AY.103	0.000025
S	1073	K1073R	aAg	aGg	4	4	AY.4	0.000006
S	1073	K1073R	aAg	aGg	3	3	AU.3	0.006329
S	1073	K1073R	aAg	aGg	3	3	B.1.1	0.000054
S	1073	K1073R	aAg	aGg	3	3	B.1.2	0.000026
S	1073	K1073R	aAg	aGg	3	3	B.1.429	0.000071
S	1073	K1073R	aAg	aGg	2	2	AY.25	0.000012
S	1073	K1073R	aAg	aGg	2	2	AY.4.2	0.000043
S	1073	K1073R	aAg	aGg	2	2	AY.47	0.000062
S	1073	K1073R	aAg	aGg	2	2	B.1.1.214	0.000111
S	1073	K1073R	aAg	aGg	2	2	B.1.36	0.000292
S	1073	K1073R	aAg	aGg	2	2	B.1.362.2	0.009434
S	1073	K1073R	aAg	aGg	2	2	D.2	0.00015
S	1073	K1073R	aAg	aGg	2	2	P.1.17	0.000324
S	1073	K1073R	aAg	aGg	2	2	P.1.7	0.000639
S	1073	K1073R	aAg	aGg	1	1	AY.100	0.000046
S	1073	K1073R	aAg	aGg	1	1	AY.102	0.000027
S	1073	K1073R	aAg	aGg	1	1	AY.26	0.000028
S	1073	K1073R	aAg	aGg	1	1	AY.3	0.00001
S	1073	K1073R	aAg	aGg	1	1	AY.39	0.000025
S	1073	K1073R	aAg	aGg	1	1	AY.39.1	0.00004
S	1073	K1073R	aAg	aGg	1	1	AY.44	0.000006
S	1073	K1073R	aAg	aGg	1	1	AY.46	0.000104
S	1073	K1073R	aAg	aGg	1	1	AY.6	0.000041
S	1073	K1073R	aAg	aGg	1	1	AY.75	0.000056
S	1073	K1073R	aAg	aGg	1	1	AY.99.2	0.000092
S	1073	K1073R	aAg	aGg	1	1	B.1.1.98	0.018519
S	1073	K1073R	aAg	aGg	1	1	B.1.157	0.002985
S	1073	K1073R	aAg	aGg	1	1	B.1.170	0.00431
S	1073	K1073R	aAg	aGg	1	1	B.1.177.17	0.000821
S	1073	K1073R	aAg	aGg	1	1	B.1.221	0.000071
S	1073	K1073R	aAg	aGg	1	1	B.1.351	0.00003
S	1073	K1073R	aAg	aGg	1	1	B.1.366	0.004878
S	1073	K1073R	aAg	aGg	1	1	B.1.427	0.00005
S	1073	K1073R	aAg	aGg	1	1	B.1.558	0.004566
S	1073	K1073R	aAg	aGg	1	1	P.1	0.000016
S	1073	K1073R	aAg	aGg	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.