CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1068

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1068V1068FnonsynGtcTtc12141214124764-24766
S1068V1068VsyngtCgtT7397100.96075824764-24766
S1068V1068VsyngtCgtA739250.033829524764-24766
S1068V1068VsyngtCgtG73940.0054127224764-24766
S1068V1068InonsynGtcAtc188188124764-24766
S1068V1068AnonsyngTcgCc72710.98611124764-24766
S1068V1068AnonsyngTCgCA7210.013888924764-24766
S1068V1068LnonsynGtcCtc4848124764-24766
S1068V1068deldelGTC---1414124764-24766
S1068V1068del1delgtCgt-530.624764-24766
S1068V1068del1delgTcg-c510.224764-24766
S1068V1068del1delGtc-tc510.224764-24766
S1068V1068GnonsyngTcgGc44124764-24766
S1068V1068DnonsyngTcgAc420.524764-24766
S1068V1068DnonsyngTCgAT420.524764-24766

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1068V1068FGtcTtc12141214All0.000232
S1068V1068VgtCgtT710739All0.000136
S1068V1068VgtCgtA25739All0.000005
S1068V1068VgtCgtG4739All0.000001
S1068V1068FGtcTtc229229D.20.017184
S1068V1068FGtcTtc205205AY.430.000908
S1068V1068IGtcAtc188188All0.000036
S1068V1068VgtCgtT154154AY.4.20.00334
S1068V1068VgtCgtT129130AY.40.000201
S1068V1068VgtCgtA1130AY.40.000002
S1068V1068FGtcTtc124124AY.40.000193
S1068V1068FGtcTtc103103B.1.36.120.990385
S1068V1068VgtCgtT9596B.1.1.70.000085
S1068V1068VgtCgtA196B.1.1.70.000001
S1068V1068AgTcgCc7172All0.000014
S1068V1068AgTCgCA172All0
S1068V1068VgtCgtT6767AY.260.001897
S1068V1068VgtCgtT5454W.10.469565
S1068V1068FGtcTtc4949B.1.1.70.000044
S1068V1068LGtcCtc4848All0.000009
S1068V1068FGtcTtc4747B.1.617.20.000177
S1068V1068VgtCgtT3838AY.120.01201
S1068V1068FGtcTtc3838B.1.10.000689
S1068V1068FGtcTtc2828B.1.1770.000369
S1068V1068FGtcTtc2727B.10.000247
S1068V1068IGtcAtc2525AY.30.000249
S1068V1068FGtcTtc2121AY.250.000126
S1068V1068IGtcAtc2020AY.440.000122
S1068V1068FGtcTtc2020AY.440.000122
S1068V1068IGtcAtc1919B.1.2380.283582
S1068V1068VgtCgtT1719B.1.617.20.000064
S1068V1068VgtCgtG119B.1.617.20.000004
S1068V1068VgtCgtA119B.1.617.20.000004
S1068V1068VgtCgtT1518AY.430.000066
S1068V1068VgtCgtA318AY.430.000013
S1068V1068IGtcAtc1717AY.1030.000106
S1068V1068FGtcTtc1717AY.230.001186
S1068V1068FGtcTtc1616AY.1030.000099
S1068V1068IGtcAtc1616B.1.1.70.000014
S1068V1068LGtcCtc1616B.1.258.110.006342
S1068V1068AgTcgCc1515AY.440.000091
S1068V1068delGTC---1414All0.000003
S1068V1068FGtcTtc1414B.1.20.000123
S1068V1068AgTcgCc1414B.1.2430.000974
S1068V1068VgtCgtT1313AY.46.60.000939
S1068V1068FGtcTtc1313B.1.3510.000386
S1068V1068VgtCgtT1212AY.30.000119
S1068V1068VgtCgtT1012B.10.000092
S1068V1068VgtCgtA212B.10.000018
S1068V1068AgTcgCc1212B.1.1.70.000011
S1068V1068VgtCgtT1111AY.330.000735
S1068V1068FGtcTtc1111B.1.1390.008065
S1068V1068IGtcAtc1111B.1.3460.014417
S1068V1068FGtcTtc1010AY.1020.000265
S1068V1068IGtcAtc1010B.1.617.20.000038
S1068V1068FGtcTtc99AD.20.001971
S1068V1068FGtcTtc99AY.46.40.001481
S1068V1068FGtcTtc99B.1.5950.002349
S1068V1068VgtCgtT88AY.440.000049
S1068V1068FGtcTtc88AY.740.000925
S1068V1068FGtcTtc88B.1.1.4470.285714
S1068V1068IGtcAtc88P.10.000126
S1068V1068VgtCgtA67AY.250.000036
S1068V1068VgtCgtT17AY.250.000006
S1068V1068FGtcTtc77AY.39.10.000277
S1068V1068IGtcAtc77B.1.20.000062
S1068V1068VgtCgtT77B.1.20.000062
S1068V1068VgtCgtT66AY.1030.000037
S1068V1068FGtcTtc66AY.290.000095
S1068V1068FGtcTtc66AY.30.00006
S1068V1068FGtcTtc66AY.4.20.00013
S1068V1068FGtcTtc66B.1.1.250.003411
S1068V1068FGtcTtc66B.1.160.160.005576
S1068V1068VgtCgtT66B.1.3510.000178
S1068V1068FGtcTtc66B.1.360.000875
S1068V1068VgtCgtT66B.1.4290.000141
S1068V1068FGtcTtc66B.1.5250.000679
S1068V1068LGtcCtc66B.1.617.20.000023
S1068V1068del1gtCgt-35All0.000001
S1068V1068del1Gtc-tc15All0
S1068V1068del1gTcg-c15All0
S1068V1068FGtcTtc55AY.200.000194
S1068V1068FGtcTtc55AY.920.001436
S1068V1068FGtcTtc55B.1.1600.000156
S1068V1068FGtcTtc55B.1.5260.000118
S1068V1068FGtcTtc55B.1.930.004669
S1068V1068FGtcTtc55P.10.000079
S1068V1068VgtCgtT35P.10.000047
S1068V1068VgtCgtA25P.10.000032
S1068V1068GgTcgGc44All0.000001
S1068V1068DgTcgAc24All0
S1068V1068DgTCgAT24All0
S1068V1068VgtCgtA44AY.220.008368
S1068V1068VgtCgtT44AY.230.000279
S1068V1068IGtcAtc44AY.260.000113
S1068V1068IGtcAtc44AY.390.000099
S1068V1068IGtcAtc44AY.40.000006
S1068V1068LGtcCtc44AY.410.001176
S1068V1068FGtcTtc44AY.420.000161
S1068V1068LGtcCtc44AY.430.000018
S1068V1068LGtcCtc44B.1.1.70.000004
S1068V1068VgtCgtT44B.1.1770.000053
S1068V1068FGtcTtc44B.1.2430.000278
S1068V1068AgTcgCc44B.1.3510.000119
S1068V1068FGtcTtc44B.1.4290.000094
S1068V1068IGtcAtc33AY.1020.00008
S1068V1068VgtCgtT33AY.390.000074
S1068V1068FGtcTtc33AY.620.001307
S1068V1068IGtcAtc33AY.670.001393
S1068V1068FGtcTtc33AY.98.10.000145
S1068V1068FGtcTtc33AZ.20.002463
S1068V1068LGtcCtc33B.10.000027
S1068V1068FGtcTtc33B.1.1.500.002037
S1068V1068AgTcgCc33B.1.20.000026
S1068V1068FGtcTtc33B.1.4160.003807
S1068V1068FGtcTtc33B.1.6090.001438
S1068V1068IGtcAtc33B.1.6280.001057
S1068V1068FGtcTtc33C.360.002732
S1068V1068AgTcgCc33N.50.0053
S1068V1068FGtcTtc22AE.80.000978
S1068V1068VgtCgtT22AY.1020.000053
S1068V1068FGtcTtc22AY.1110.000366
S1068V1068FGtcTtc22AY.1130.000285
S1068V1068IGtcAtc22AY.250.000012
S1068V1068FGtcTtc22AY.260.000057
S1068V1068VgtCgtT12AY.290.000016
S1068V1068VgtCgtG12AY.290.000016
S1068V1068FGtcTtc22AY.390.000049
S1068V1068AgTcgCc22AY.40.000003
S1068V1068IGtcAtc22AY.430.000009
S1068V1068FGtcTtc22AY.450.000243
S1068V1068IGtcAtc22AY.50.000041
S1068V1068VgtCgtT22AY.750.000112
S1068V1068FGtcTtc22B0.000256
S1068V1068AgTcgCc12B.10.000009
S1068V1068AgTCgCA12B.10.000009
S1068V1068FGtcTtc22B.1.1.2840.000215
S1068V1068LGtcCtc22B.1.1.700.000682
S1068V1068FGtcTtc22B.1.177.240.002591
S1068V1068FGtcTtc22B.1.258.110.000793
S1068V1068FGtcTtc22B.1.351.30.001753
S1068V1068VgtCgtT22B.1.3670.001585
S1068V1068FGtcTtc22B.1.416.10.003125
S1068V1068IGtcAtc22B.1.4270.000101
S1068V1068VgtCgtT22B.1.5170.000854
S1068V1068VgtCgtA22B.1.5260.000047
S1068V1068VgtCgtA22B.1.5950.000522
S1068V1068FGtcTtc22B.1.617.10.000258
S1068V1068del1gtCgt-22B.1.6270.00404
S1068V1068FGtcTtc22B.1.6370.000146
S1068V1068IGtcAtc22B.1.6370.000146
S1068V1068IGtcAtc22B.6.60.001778
S1068V1068FGtcTtc22Q.80.00033
S1068V1068VgtCgtT22R.10.00018
S1068V1068FGtcTtc22W.10.017391
S1068V1068AgTcgCc11A.20.000662
S1068V1068AgTcgCc11A.2.20.001689
S1068V1068LGtcCtc11AE.80.000489
S1068V1068VgtCgtT11AY.1080.001103
S1068V1068FGtcTtc11AY.1100.000113
S1068V1068IGtcAtc11AY.1110.000183
S1068V1068VgtCgtT11AY.1130.000142
S1068V1068FGtcTtc11AY.1160.000287
S1068V1068FGtcTtc11AY.116.10.000311
S1068V1068FGtcTtc11AY.1170.000085
S1068V1068DgTCgAT11AY.1170.000085
S1068V1068FGtcTtc11AY.1180.000063
S1068V1068FGtcTtc11AY.1190.000035
S1068V1068VgtCgtT11AY.1200.000037
S1068V1068delGTC---11AY.1200.000037
S1068V1068FGtcTtc11AY.1200.000037
S1068V1068FGtcTtc11AY.1210.000135
S1068V1068VgtCgtT11AY.130.000161
S1068V1068IGtcAtc11AY.160.00038
S1068V1068VgtCgtT11AY.16.10.00047
S1068V1068AgTcgCc11AY.230.00007
S1068V1068IGtcAtc11AY.230.00007
S1068V1068LGtcCtc11AY.260.000028
S1068V1068IGtcAtc11AY.290.000016
S1068V1068FGtcTtc11AY.29.10.000221
S1068V1068GgTcgGc11AY.3.10.000085
S1068V1068IGtcAtc11AY.330.000067
S1068V1068FGtcTtc11AY.350.000233
S1068V1068AgTcgCc11AY.390.000025
S1068V1068AgTcgCc11AY.39.10.00004
S1068V1068VgtCgtT11AY.39.10.00004
S1068V1068delGTC---11AY.40.000002
S1068V1068GgTcgGc11AY.40.000002
S1068V1068LGtcCtc11AY.40.000002
S1068V1068FGtcTtc11AY.4.10.000737
S1068V1068IGtcAtc11AY.4.2.10.000149
S1068V1068DgTcgAc11AY.430.000004
S1068V1068delGTC---11AY.430.000004
S1068V1068FGtcTtc11AY.460.000104
S1068V1068delGTC---11AY.46.20.000635
S1068V1068FGtcTtc11AY.46.60.000072
S1068V1068VgtCgtT11AY.50.000021
S1068V1068FGtcTtc11AY.5.30.000337
S1068V1068VgtCgtT11AY.5.40.000277
S1068V1068VgtCgtT11AY.510.000909
S1068V1068IGtcAtc11AY.540.000095
S1068V1068FGtcTtc11AY.630.000387
S1068V1068FGtcTtc11AY.640.000595
S1068V1068IGtcAtc11AY.690.000187
S1068V1068FGtcTtc11AY.7.10.000113
S1068V1068FGtcTtc11AY.7.20.000559
S1068V1068FGtcTtc11AY.700.000209
S1068V1068IGtcAtc11AY.750.000056
S1068V1068delGTC---11AY.750.000056
S1068V1068IGtcAtc11AY.80.000606
S1068V1068FGtcTtc11AY.90.000068
S1068V1068VgtCgtT11AY.9.20.000037
S1068V1068FGtcTtc11AY.9.20.000037
S1068V1068FGtcTtc11AY.900.000684
S1068V1068VgtCgtT11AY.910.00073
S1068V1068VgtCgtT11AY.930.000273
S1068V1068AgTcgCc11AY.950.000761
S1068V1068VgtCgtT11AY.980.000079
S1068V1068VgtCgtT11AY.98.10.000048
S1068V1068FGtcTtc11AY.99.20.000092
S1068V1068VgtCgtT11B0.000128
S1068V1068IGtcAtc11B.10.000009
S1068V1068del1gtCgt-11B.10.000009
S1068V1068delGTC---11B.10.000009
S1068V1068IGtcAtc11B.1.10.000018
S1068V1068AgTcgCc11B.1.10.000018
S1068V1068LGtcCtc11B.1.10.000018
S1068V1068VgtCgtG11B.1.10.000018
S1068V1068DgTcgAc11B.1.10.000018
S1068V1068FGtcTtc11B.1.1.100.001115
S1068V1068DgTCgAT11B.1.1.1390.022727
S1068V1068VgtCgtA11B.1.1.2140.000055
S1068V1068delGTC---11B.1.1.2360.006897
S1068V1068AgTcgCc11B.1.1.250.000569
S1068V1068VgtCgtT11B.1.1.280.000311
S1068V1068FGtcTtc11B.1.1.280.000311
S1068V1068FGtcTtc11B.1.1.2940.001266
S1068V1068AgTcgCc11B.1.1.3050.003861
S1068V1068delGTC---11B.1.1.3060.000438
S1068V1068FGtcTtc11B.1.1.3150.008475
S1068V1068FGtcTtc11B.1.1.3170.000412
S1068V1068FGtcTtc11B.1.1.330.000421
S1068V1068FGtcTtc11B.1.1.3620.005618
S1068V1068IGtcAtc11B.1.1.370.000193
S1068V1068VgtCgtT11B.1.1.3980.003226
S1068V1068IGtcAtc11B.1.1.4090.002833
S1068V1068FGtcTtc11B.1.1.4160.000905
S1068V1068VgtCgtT11B.1.1.4160.000905
S1068V1068FGtcTtc11B.1.1.4340.000349
S1068V1068LGtcCtc11B.1.1.5190.00004
S1068V1068VgtCgtT11B.1.1.540.003021
S1068V1068del1gTcg-c11B.1.1.70.000001
S1068V1068AgTcgCc11B.1.1.700.000341
S1068V1068FGtcTtc11B.1.110.30.000718
S1068V1068FGtcTtc11B.1.1590.012195
S1068V1068AgTcgCc11B.1.1600.000031
S1068V1068VgtCgtT11B.1.160.160.000929
S1068V1068AgTcgCc11B.1.160.310.008065
S1068V1068AgTcgCc11B.1.1770.000013
S1068V1068VgtCgtT11B.1.177.480.003125
S1068V1068delGTC---11B.1.177.50.001242
S1068V1068IGtcAtc11B.1.177.570.000281
S1068V1068VgtCgtT11B.1.177.600.000218
S1068V1068AgTcgCc11B.1.177.790.002342
S1068V1068LGtcCtc11B.1.177.820.000477
S1068V1068FGtcTtc11B.1.177.870.000728
S1068V1068GgTcgGc11B.1.20.000009
S1068V1068FGtcTtc11B.1.2100.002132
S1068V1068VgtCgtT11B.1.2220.001692
S1068V1068IGtcAtc11B.1.2220.001692
S1068V1068IGtcAtc11B.1.2430.00007
S1068V1068LGtcCtc11B.1.2580.000067
S1068V1068IGtcAtc11B.1.2580.000067
S1068V1068FGtcTtc11B.1.2580.000067
S1068V1068AgTcgCc11B.1.258.110.000396
S1068V1068delGTC---11B.1.3510.00003
S1068V1068FGtcTtc11B.1.351.20.000303
S1068V1068IGtcAtc11B.1.351.30.000876
S1068V1068VgtCgtT11B.1.36.220.001208
S1068V1068FGtcTtc11B.1.36.280.005747
S1068V1068FGtcTtc11B.1.3710.001122
S1068V1068VgtCgtT11B.1.4000.000429
S1068V1068FGtcTtc11B.1.438.10.000107
S1068V1068FGtcTtc11B.1.4560.003268
S1068V1068GgTcgGc11B.1.4590.004082
S1068V1068FGtcTtc11B.1.5210.004975
S1068V1068FGtcTtc11B.1.5240.001406
S1068V1068LGtcCtc11B.1.5250.000113
S1068V1068IGtcAtc11B.1.5260.000024
S1068V1068del1Gtc-tc11B.1.5640.000426
S1068V1068VgtCgtT11B.1.5640.000426
S1068V1068FGtcTtc11B.1.5650.00081
S1068V1068VgtCgtT11B.1.5760.000907
S1068V1068VgtCgtT11B.1.5770.000687
S1068V1068FGtcTtc11B.1.5820.000491
S1068V1068FGtcTtc11B.1.5960.000087
S1068V1068AgTcgCc11B.1.617.20.000004
S1068V1068delGTC---11B.1.617.20.000004
S1068V1068IGtcAtc11B.1.6200.000946
S1068V1068VgtCgtT11B.1.6210.000089
S1068V1068VgtCgtG11B.1.6300.005236
S1068V1068VgtCgtT11B.1.6370.000073
S1068V1068FGtcTtc11B.1.9.40.006135
S1068V1068VgtCgtT11B.400.000364
S1068V1068FGtcTtc11B.60.00091
S1068V1068FGtcTtc11C.260.007353
S1068V1068IGtcAtc11C.360.000911
S1068V1068FGtcTtc11C.36.30.000567
S1068V1068VgtCgtT11C.370.000116
S1068V1068delGTC---11C.370.000116
S1068V1068VgtCgtT11P.1.100.000269
S1068V1068LGtcCtc11P.1.140.000048
S1068V1068FGtcTtc11P.1.140.000048
S1068V1068delGTC---11P.1.150.000232
S1068V1068AgTcgCc11P.1.160.000374
S1068V1068FGtcTtc11P.1.20.001156
S1068V1068VgtCgtT11P.1.70.000319
S1068V1068FGtcTtc11P.20.000187
S1068V1068VgtCgtT11P.20.000187
S1068V1068delGTC---11Q.10.000126
S1068V1068FGtcTtc11Q.10.000126
S1068V1068VgtCgtT11Q.80.000165