CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1068 | V1068F | nonsyn | Gtc | Ttc | 1214 | 1214 | 1 | 24764-24766 | |
S | 1068 | V1068V | syn | gtC | gtT | 739 | 710 | 0.960758 | 24764-24766 | |
S | 1068 | V1068V | syn | gtC | gtA | 739 | 25 | 0.0338295 | 24764-24766 | |
S | 1068 | V1068V | syn | gtC | gtG | 739 | 4 | 0.00541272 | 24764-24766 | |
S | 1068 | V1068I | nonsyn | Gtc | Atc | 188 | 188 | 1 | 24764-24766 | |
S | 1068 | V1068A | nonsyn | gTc | gCc | 72 | 71 | 0.986111 | 24764-24766 | |
S | 1068 | V1068A | nonsyn | gTC | gCA | 72 | 1 | 0.0138889 | 24764-24766 | |
S | 1068 | V1068L | nonsyn | Gtc | Ctc | 48 | 48 | 1 | 24764-24766 | |
S | 1068 | V1068del | del | GTC | --- | 14 | 14 | 1 | 24764-24766 | |
S | 1068 | V1068del1 | del | gtC | gt- | 5 | 3 | 0.6 | 24764-24766 | |
S | 1068 | V1068del1 | del | gTc | g-c | 5 | 1 | 0.2 | 24764-24766 | |
S | 1068 | V1068del1 | del | Gtc | -tc | 5 | 1 | 0.2 | 24764-24766 | |
S | 1068 | V1068G | nonsyn | gTc | gGc | 4 | 4 | 1 | 24764-24766 | |
S | 1068 | V1068D | nonsyn | gTc | gAc | 4 | 2 | 0.5 | 24764-24766 | |
S | 1068 | V1068D | nonsyn | gTC | gAT | 4 | 2 | 0.5 | 24764-24766 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1068 | V1068F | Gtc | Ttc | 1214 | 1214 | All | 0.000232 |
S | 1068 | V1068V | gtC | gtT | 710 | 739 | All | 0.000136 |
S | 1068 | V1068V | gtC | gtA | 25 | 739 | All | 0.000005 |
S | 1068 | V1068V | gtC | gtG | 4 | 739 | All | 0.000001 |
S | 1068 | V1068F | Gtc | Ttc | 229 | 229 | D.2 | 0.017184 |
S | 1068 | V1068F | Gtc | Ttc | 205 | 205 | AY.43 | 0.000908 |
S | 1068 | V1068I | Gtc | Atc | 188 | 188 | All | 0.000036 |
S | 1068 | V1068V | gtC | gtT | 154 | 154 | AY.4.2 | 0.00334 |
S | 1068 | V1068V | gtC | gtT | 129 | 130 | AY.4 | 0.000201 |
S | 1068 | V1068V | gtC | gtA | 1 | 130 | AY.4 | 0.000002 |
S | 1068 | V1068F | Gtc | Ttc | 124 | 124 | AY.4 | 0.000193 |
S | 1068 | V1068F | Gtc | Ttc | 103 | 103 | B.1.36.12 | 0.990385 |
S | 1068 | V1068V | gtC | gtT | 95 | 96 | B.1.1.7 | 0.000085 |
S | 1068 | V1068V | gtC | gtA | 1 | 96 | B.1.1.7 | 0.000001 |
S | 1068 | V1068A | gTc | gCc | 71 | 72 | All | 0.000014 |
S | 1068 | V1068A | gTC | gCA | 1 | 72 | All | 0 |
S | 1068 | V1068V | gtC | gtT | 67 | 67 | AY.26 | 0.001897 |
S | 1068 | V1068V | gtC | gtT | 54 | 54 | W.1 | 0.469565 |
S | 1068 | V1068F | Gtc | Ttc | 49 | 49 | B.1.1.7 | 0.000044 |
S | 1068 | V1068L | Gtc | Ctc | 48 | 48 | All | 0.000009 |
S | 1068 | V1068F | Gtc | Ttc | 47 | 47 | B.1.617.2 | 0.000177 |
S | 1068 | V1068V | gtC | gtT | 38 | 38 | AY.12 | 0.01201 |
S | 1068 | V1068F | Gtc | Ttc | 38 | 38 | B.1.1 | 0.000689 |
S | 1068 | V1068F | Gtc | Ttc | 28 | 28 | B.1.177 | 0.000369 |
S | 1068 | V1068F | Gtc | Ttc | 27 | 27 | B.1 | 0.000247 |
S | 1068 | V1068I | Gtc | Atc | 25 | 25 | AY.3 | 0.000249 |
S | 1068 | V1068F | Gtc | Ttc | 21 | 21 | AY.25 | 0.000126 |
S | 1068 | V1068I | Gtc | Atc | 20 | 20 | AY.44 | 0.000122 |
S | 1068 | V1068F | Gtc | Ttc | 20 | 20 | AY.44 | 0.000122 |
S | 1068 | V1068I | Gtc | Atc | 19 | 19 | B.1.238 | 0.283582 |
S | 1068 | V1068V | gtC | gtT | 17 | 19 | B.1.617.2 | 0.000064 |
S | 1068 | V1068V | gtC | gtG | 1 | 19 | B.1.617.2 | 0.000004 |
S | 1068 | V1068V | gtC | gtA | 1 | 19 | B.1.617.2 | 0.000004 |
S | 1068 | V1068V | gtC | gtT | 15 | 18 | AY.43 | 0.000066 |
S | 1068 | V1068V | gtC | gtA | 3 | 18 | AY.43 | 0.000013 |
S | 1068 | V1068I | Gtc | Atc | 17 | 17 | AY.103 | 0.000106 |
S | 1068 | V1068F | Gtc | Ttc | 17 | 17 | AY.23 | 0.001186 |
S | 1068 | V1068F | Gtc | Ttc | 16 | 16 | AY.103 | 0.000099 |
S | 1068 | V1068I | Gtc | Atc | 16 | 16 | B.1.1.7 | 0.000014 |
S | 1068 | V1068L | Gtc | Ctc | 16 | 16 | B.1.258.11 | 0.006342 |
S | 1068 | V1068A | gTc | gCc | 15 | 15 | AY.44 | 0.000091 |
S | 1068 | V1068del | GTC | --- | 14 | 14 | All | 0.000003 |
S | 1068 | V1068F | Gtc | Ttc | 14 | 14 | B.1.2 | 0.000123 |
S | 1068 | V1068A | gTc | gCc | 14 | 14 | B.1.243 | 0.000974 |
S | 1068 | V1068V | gtC | gtT | 13 | 13 | AY.46.6 | 0.000939 |
S | 1068 | V1068F | Gtc | Ttc | 13 | 13 | B.1.351 | 0.000386 |
S | 1068 | V1068V | gtC | gtT | 12 | 12 | AY.3 | 0.000119 |
S | 1068 | V1068V | gtC | gtT | 10 | 12 | B.1 | 0.000092 |
S | 1068 | V1068V | gtC | gtA | 2 | 12 | B.1 | 0.000018 |
S | 1068 | V1068A | gTc | gCc | 12 | 12 | B.1.1.7 | 0.000011 |
S | 1068 | V1068V | gtC | gtT | 11 | 11 | AY.33 | 0.000735 |
S | 1068 | V1068F | Gtc | Ttc | 11 | 11 | B.1.139 | 0.008065 |
S | 1068 | V1068I | Gtc | Atc | 11 | 11 | B.1.346 | 0.014417 |
S | 1068 | V1068F | Gtc | Ttc | 10 | 10 | AY.102 | 0.000265 |
S | 1068 | V1068I | Gtc | Atc | 10 | 10 | B.1.617.2 | 0.000038 |
S | 1068 | V1068F | Gtc | Ttc | 9 | 9 | AD.2 | 0.001971 |
S | 1068 | V1068F | Gtc | Ttc | 9 | 9 | AY.46.4 | 0.001481 |
S | 1068 | V1068F | Gtc | Ttc | 9 | 9 | B.1.595 | 0.002349 |
S | 1068 | V1068V | gtC | gtT | 8 | 8 | AY.44 | 0.000049 |
S | 1068 | V1068F | Gtc | Ttc | 8 | 8 | AY.74 | 0.000925 |
S | 1068 | V1068F | Gtc | Ttc | 8 | 8 | B.1.1.447 | 0.285714 |
S | 1068 | V1068I | Gtc | Atc | 8 | 8 | P.1 | 0.000126 |
S | 1068 | V1068V | gtC | gtA | 6 | 7 | AY.25 | 0.000036 |
S | 1068 | V1068V | gtC | gtT | 1 | 7 | AY.25 | 0.000006 |
S | 1068 | V1068F | Gtc | Ttc | 7 | 7 | AY.39.1 | 0.000277 |
S | 1068 | V1068I | Gtc | Atc | 7 | 7 | B.1.2 | 0.000062 |
S | 1068 | V1068V | gtC | gtT | 7 | 7 | B.1.2 | 0.000062 |
S | 1068 | V1068V | gtC | gtT | 6 | 6 | AY.103 | 0.000037 |
S | 1068 | V1068F | Gtc | Ttc | 6 | 6 | AY.29 | 0.000095 |
S | 1068 | V1068F | Gtc | Ttc | 6 | 6 | AY.3 | 0.00006 |
S | 1068 | V1068F | Gtc | Ttc | 6 | 6 | AY.4.2 | 0.00013 |
S | 1068 | V1068F | Gtc | Ttc | 6 | 6 | B.1.1.25 | 0.003411 |
S | 1068 | V1068F | Gtc | Ttc | 6 | 6 | B.1.160.16 | 0.005576 |
S | 1068 | V1068V | gtC | gtT | 6 | 6 | B.1.351 | 0.000178 |
S | 1068 | V1068F | Gtc | Ttc | 6 | 6 | B.1.36 | 0.000875 |
S | 1068 | V1068V | gtC | gtT | 6 | 6 | B.1.429 | 0.000141 |
S | 1068 | V1068F | Gtc | Ttc | 6 | 6 | B.1.525 | 0.000679 |
S | 1068 | V1068L | Gtc | Ctc | 6 | 6 | B.1.617.2 | 0.000023 |
S | 1068 | V1068del1 | gtC | gt- | 3 | 5 | All | 0.000001 |
S | 1068 | V1068del1 | Gtc | -tc | 1 | 5 | All | 0 |
S | 1068 | V1068del1 | gTc | g-c | 1 | 5 | All | 0 |
S | 1068 | V1068F | Gtc | Ttc | 5 | 5 | AY.20 | 0.000194 |
S | 1068 | V1068F | Gtc | Ttc | 5 | 5 | AY.92 | 0.001436 |
S | 1068 | V1068F | Gtc | Ttc | 5 | 5 | B.1.160 | 0.000156 |
S | 1068 | V1068F | Gtc | Ttc | 5 | 5 | B.1.526 | 0.000118 |
S | 1068 | V1068F | Gtc | Ttc | 5 | 5 | B.1.93 | 0.004669 |
S | 1068 | V1068F | Gtc | Ttc | 5 | 5 | P.1 | 0.000079 |
S | 1068 | V1068V | gtC | gtT | 3 | 5 | P.1 | 0.000047 |
S | 1068 | V1068V | gtC | gtA | 2 | 5 | P.1 | 0.000032 |
S | 1068 | V1068G | gTc | gGc | 4 | 4 | All | 0.000001 |
S | 1068 | V1068D | gTc | gAc | 2 | 4 | All | 0 |
S | 1068 | V1068D | gTC | gAT | 2 | 4 | All | 0 |
S | 1068 | V1068V | gtC | gtA | 4 | 4 | AY.22 | 0.008368 |
S | 1068 | V1068V | gtC | gtT | 4 | 4 | AY.23 | 0.000279 |
S | 1068 | V1068I | Gtc | Atc | 4 | 4 | AY.26 | 0.000113 |
S | 1068 | V1068I | Gtc | Atc | 4 | 4 | AY.39 | 0.000099 |
S | 1068 | V1068I | Gtc | Atc | 4 | 4 | AY.4 | 0.000006 |
S | 1068 | V1068L | Gtc | Ctc | 4 | 4 | AY.41 | 0.001176 |
S | 1068 | V1068F | Gtc | Ttc | 4 | 4 | AY.42 | 0.000161 |
S | 1068 | V1068L | Gtc | Ctc | 4 | 4 | AY.43 | 0.000018 |
S | 1068 | V1068L | Gtc | Ctc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 1068 | V1068V | gtC | gtT | 4 | 4 | B.1.177 | 0.000053 |
S | 1068 | V1068F | Gtc | Ttc | 4 | 4 | B.1.243 | 0.000278 |
S | 1068 | V1068A | gTc | gCc | 4 | 4 | B.1.351 | 0.000119 |
S | 1068 | V1068F | Gtc | Ttc | 4 | 4 | B.1.429 | 0.000094 |
S | 1068 | V1068I | Gtc | Atc | 3 | 3 | AY.102 | 0.00008 |
S | 1068 | V1068V | gtC | gtT | 3 | 3 | AY.39 | 0.000074 |
S | 1068 | V1068F | Gtc | Ttc | 3 | 3 | AY.62 | 0.001307 |
S | 1068 | V1068I | Gtc | Atc | 3 | 3 | AY.67 | 0.001393 |
S | 1068 | V1068F | Gtc | Ttc | 3 | 3 | AY.98.1 | 0.000145 |
S | 1068 | V1068F | Gtc | Ttc | 3 | 3 | AZ.2 | 0.002463 |
S | 1068 | V1068L | Gtc | Ctc | 3 | 3 | B.1 | 0.000027 |
S | 1068 | V1068F | Gtc | Ttc | 3 | 3 | B.1.1.50 | 0.002037 |
S | 1068 | V1068A | gTc | gCc | 3 | 3 | B.1.2 | 0.000026 |
S | 1068 | V1068F | Gtc | Ttc | 3 | 3 | B.1.416 | 0.003807 |
S | 1068 | V1068F | Gtc | Ttc | 3 | 3 | B.1.609 | 0.001438 |
S | 1068 | V1068I | Gtc | Atc | 3 | 3 | B.1.628 | 0.001057 |
S | 1068 | V1068F | Gtc | Ttc | 3 | 3 | C.36 | 0.002732 |
S | 1068 | V1068A | gTc | gCc | 3 | 3 | N.5 | 0.0053 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | AE.8 | 0.000978 |
S | 1068 | V1068V | gtC | gtT | 2 | 2 | AY.102 | 0.000053 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | AY.111 | 0.000366 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | AY.113 | 0.000285 |
S | 1068 | V1068I | Gtc | Atc | 2 | 2 | AY.25 | 0.000012 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | AY.26 | 0.000057 |
S | 1068 | V1068V | gtC | gtT | 1 | 2 | AY.29 | 0.000016 |
S | 1068 | V1068V | gtC | gtG | 1 | 2 | AY.29 | 0.000016 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | AY.39 | 0.000049 |
S | 1068 | V1068A | gTc | gCc | 2 | 2 | AY.4 | 0.000003 |
S | 1068 | V1068I | Gtc | Atc | 2 | 2 | AY.43 | 0.000009 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | AY.45 | 0.000243 |
S | 1068 | V1068I | Gtc | Atc | 2 | 2 | AY.5 | 0.000041 |
S | 1068 | V1068V | gtC | gtT | 2 | 2 | AY.75 | 0.000112 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B | 0.000256 |
S | 1068 | V1068A | gTc | gCc | 1 | 2 | B.1 | 0.000009 |
S | 1068 | V1068A | gTC | gCA | 1 | 2 | B.1 | 0.000009 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B.1.1.284 | 0.000215 |
S | 1068 | V1068L | Gtc | Ctc | 2 | 2 | B.1.1.70 | 0.000682 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B.1.177.24 | 0.002591 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B.1.258.11 | 0.000793 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B.1.351.3 | 0.001753 |
S | 1068 | V1068V | gtC | gtT | 2 | 2 | B.1.367 | 0.001585 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B.1.416.1 | 0.003125 |
S | 1068 | V1068I | Gtc | Atc | 2 | 2 | B.1.427 | 0.000101 |
S | 1068 | V1068V | gtC | gtT | 2 | 2 | B.1.517 | 0.000854 |
S | 1068 | V1068V | gtC | gtA | 2 | 2 | B.1.526 | 0.000047 |
S | 1068 | V1068V | gtC | gtA | 2 | 2 | B.1.595 | 0.000522 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B.1.617.1 | 0.000258 |
S | 1068 | V1068del1 | gtC | gt- | 2 | 2 | B.1.627 | 0.00404 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | B.1.637 | 0.000146 |
S | 1068 | V1068I | Gtc | Atc | 2 | 2 | B.1.637 | 0.000146 |
S | 1068 | V1068I | Gtc | Atc | 2 | 2 | B.6.6 | 0.001778 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | Q.8 | 0.00033 |
S | 1068 | V1068V | gtC | gtT | 2 | 2 | R.1 | 0.00018 |
S | 1068 | V1068F | Gtc | Ttc | 2 | 2 | W.1 | 0.017391 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | A.2 | 0.000662 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | A.2.2 | 0.001689 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | AE.8 | 0.000489 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.108 | 0.001103 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.110 | 0.000113 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.111 | 0.000183 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.113 | 0.000142 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.116 | 0.000287 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.116.1 | 0.000311 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.117 | 0.000085 |
S | 1068 | V1068D | gTC | gAT | 1 | 1 | AY.117 | 0.000085 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.118 | 0.000063 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.119 | 0.000035 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.120 | 0.000037 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | AY.120 | 0.000037 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.120 | 0.000037 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.121 | 0.000135 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.13 | 0.000161 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.16 | 0.00038 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.16.1 | 0.00047 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | AY.23 | 0.00007 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.23 | 0.00007 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | AY.26 | 0.000028 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.29 | 0.000016 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.29.1 | 0.000221 |
S | 1068 | V1068G | gTc | gGc | 1 | 1 | AY.3.1 | 0.000085 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.33 | 0.000067 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.35 | 0.000233 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | AY.39 | 0.000025 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | AY.39.1 | 0.00004 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.39.1 | 0.00004 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | AY.4 | 0.000002 |
S | 1068 | V1068G | gTc | gGc | 1 | 1 | AY.4 | 0.000002 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | AY.4 | 0.000002 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.4.1 | 0.000737 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1068 | V1068D | gTc | gAc | 1 | 1 | AY.43 | 0.000004 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.46 | 0.000104 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.46.6 | 0.000072 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.5 | 0.000021 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.5.3 | 0.000337 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.5.4 | 0.000277 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.51 | 0.000909 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.54 | 0.000095 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.63 | 0.000387 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.64 | 0.000595 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.69 | 0.000187 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.7.1 | 0.000113 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.7.2 | 0.000559 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.70 | 0.000209 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.75 | 0.000056 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | AY.75 | 0.000056 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | AY.8 | 0.000606 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.9 | 0.000068 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.9.2 | 0.000037 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.9.2 | 0.000037 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.90 | 0.000684 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.91 | 0.00073 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.93 | 0.000273 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | AY.95 | 0.000761 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.98 | 0.000079 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | AY.98.1 | 0.000048 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | AY.99.2 | 0.000092 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B | 0.000128 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1 | 0.000009 |
S | 1068 | V1068del1 | gtC | gt- | 1 | 1 | B.1 | 0.000009 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | B.1 | 0.000009 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.1 | 0.000018 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.1 | 0.000018 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | B.1.1 | 0.000018 |
S | 1068 | V1068V | gtC | gtG | 1 | 1 | B.1.1 | 0.000018 |
S | 1068 | V1068D | gTc | gAc | 1 | 1 | B.1.1 | 0.000018 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.10 | 0.001115 |
S | 1068 | V1068D | gTC | gAT | 1 | 1 | B.1.1.139 | 0.022727 |
S | 1068 | V1068V | gtC | gtA | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.1.25 | 0.000569 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.1.28 | 0.000311 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.28 | 0.000311 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.294 | 0.001266 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.1.305 | 0.003861 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.315 | 0.008475 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.317 | 0.000412 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.362 | 0.005618 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.1.398 | 0.003226 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.416 | 0.000905 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.1.416 | 0.000905 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.1.54 | 0.003021 |
S | 1068 | V1068del1 | gTc | g-c | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.110.3 | 0.000718 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.159 | 0.012195 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.160 | 0.000031 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.160.16 | 0.000929 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.160.31 | 0.008065 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.177 | 0.000013 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.177.48 | 0.003125 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | B.1.177.5 | 0.001242 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.177.57 | 0.000281 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.177.79 | 0.002342 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | B.1.177.82 | 0.000477 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.177.87 | 0.000728 |
S | 1068 | V1068G | gTc | gGc | 1 | 1 | B.1.2 | 0.000009 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.210 | 0.002132 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.222 | 0.001692 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.222 | 0.001692 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.243 | 0.00007 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | B.1.258 | 0.000067 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.258 | 0.000067 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.258 | 0.000067 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.258.11 | 0.000396 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.351.2 | 0.000303 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.36.22 | 0.001208 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.36.28 | 0.005747 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.371 | 0.001122 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.400 | 0.000429 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.438.1 | 0.000107 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.456 | 0.003268 |
S | 1068 | V1068G | gTc | gGc | 1 | 1 | B.1.459 | 0.004082 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.521 | 0.004975 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.524 | 0.001406 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | B.1.525 | 0.000113 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.526 | 0.000024 |
S | 1068 | V1068del1 | Gtc | -tc | 1 | 1 | B.1.564 | 0.000426 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.564 | 0.000426 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.565 | 0.00081 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.576 | 0.000907 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.577 | 0.000687 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.582 | 0.000491 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.596 | 0.000087 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | B.1.620 | 0.000946 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.621 | 0.000089 |
S | 1068 | V1068V | gtC | gtG | 1 | 1 | B.1.630 | 0.005236 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.1.637 | 0.000073 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.1.9.4 | 0.006135 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | B.40 | 0.000364 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | B.6 | 0.00091 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | C.26 | 0.007353 |
S | 1068 | V1068I | Gtc | Atc | 1 | 1 | C.36 | 0.000911 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | C.36.3 | 0.000567 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | C.37 | 0.000116 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | C.37 | 0.000116 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | P.1.10 | 0.000269 |
S | 1068 | V1068L | Gtc | Ctc | 1 | 1 | P.1.14 | 0.000048 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | P.1.14 | 0.000048 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1068 | V1068A | gTc | gCc | 1 | 1 | P.1.16 | 0.000374 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | P.1.2 | 0.001156 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | P.1.7 | 0.000319 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | P.2 | 0.000187 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | P.2 | 0.000187 |
S | 1068 | V1068del | GTC | --- | 1 | 1 | Q.1 | 0.000126 |
S | 1068 | V1068F | Gtc | Ttc | 1 | 1 | Q.1 | 0.000126 |
S | 1068 | V1068V | gtC | gtT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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