CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1063 | L1063F | nonsyn | ttG | ttT | 2777 | 2749 | 0.989917 | 24749-24751 | |
S | 1063 | L1063F | nonsyn | ttG | ttC | 2777 | 28 | 0.0100828 | 24749-24751 | |
S | 1063 | L1063L | syn | ttG | ttA | 504 | 292 | 0.579365 | 24749-24751 | |
S | 1063 | L1063L | syn | Ttg | Ctg | 504 | 212 | 0.420635 | 24749-24751 | |
S | 1063 | L1063V | nonsyn | Ttg | Gtg | 41 | 41 | 1 | 24749-24751 | |
S | 1063 | L1063del | del | TTG | --- | 18 | 18 | 1 | 24749-24751 | |
S | 1063 | L1063M | nonsyn | Ttg | Atg | 7 | 7 | 1 | 24749-24751 | |
S | 1063 | L1063del1 | del | Ttg | -tg | 3 | 3 | 1 | 24749-24751 | |
S | 1063 | L1063del2 | del | TTg | --g | 2 | 1 | 0.5 | 24749-24751 | |
S | 1063 | L1063del2 | del | TTG | --A | 2 | 1 | 0.5 | 24749-24751 | |
S | 1063 | L1063S | nonsyn | tTg | tCg | 1 | 1 | 1 | 24749-24751 | |
S | 1063 | L1063W | nonsyn | tTg | tGg | 1 | 1 | 1 | 24749-24751 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1063 | L1063F | ttG | ttT | 2749 | 2777 | All | 0.000526 |
S | 1063 | L1063F | ttG | ttC | 28 | 2777 | All | 0.000005 |
S | 1063 | L1063L | ttG | ttA | 292 | 504 | All | 0.000056 |
S | 1063 | L1063L | Ttg | Ctg | 212 | 504 | All | 0.000041 |
S | 1063 | L1063F | ttG | ttT | 384 | 384 | B.1.362 | 0.59168 |
S | 1063 | L1063F | ttG | ttT | 303 | 303 | AY.4 | 0.000472 |
S | 1063 | L1063F | ttG | ttT | 180 | 180 | B.1.617.2 | 0.000678 |
S | 1063 | L1063F | ttG | ttT | 140 | 144 | B.1.258 | 0.009317 |
S | 1063 | L1063F | ttG | ttC | 4 | 144 | B.1.258 | 0.000266 |
S | 1063 | L1063F | ttG | ttT | 142 | 142 | B.1.2 | 0.00125 |
S | 1063 | L1063F | ttG | ttT | 101 | 108 | B.1.1.7 | 0.00009 |
S | 1063 | L1063F | ttG | ttC | 7 | 108 | B.1.1.7 | 0.000006 |
S | 1063 | L1063F | ttG | ttT | 97 | 101 | AY.43 | 0.00043 |
S | 1063 | L1063F | ttG | ttC | 4 | 101 | AY.43 | 0.000018 |
S | 1063 | L1063L | ttG | ttA | 90 | 95 | AY.4 | 0.00014 |
S | 1063 | L1063L | Ttg | Ctg | 5 | 95 | AY.4 | 0.000008 |
S | 1063 | L1063L | Ttg | Ctg | 94 | 94 | AY.9.2 | 0.003453 |
S | 1063 | L1063F | ttG | ttT | 81 | 81 | B.1.177.88 | 1 |
S | 1063 | L1063F | ttG | ttT | 69 | 69 | B.1 | 0.000632 |
S | 1063 | L1063F | ttG | ttT | 67 | 67 | AY.103 | 0.000416 |
S | 1063 | L1063F | ttG | ttT | 67 | 67 | AY.44 | 0.000408 |
S | 1063 | L1063L | ttG | ttA | 45 | 66 | B.1.1.7 | 0.00004 |
S | 1063 | L1063L | Ttg | Ctg | 21 | 66 | B.1.1.7 | 0.000019 |
S | 1063 | L1063F | ttG | ttT | 60 | 60 | B.1.1.263 | 0.093458 |
S | 1063 | L1063F | ttG | ttT | 53 | 53 | B.1.241 | 0.043019 |
S | 1063 | L1063F | ttG | ttT | 50 | 50 | AY.5 | 0.001032 |
S | 1063 | L1063F | ttG | ttT | 43 | 43 | B.1.36 | 0.006274 |
S | 1063 | L1063V | Ttg | Gtg | 41 | 41 | All | 0.000008 |
S | 1063 | L1063F | ttG | ttT | 38 | 38 | AY.20 | 0.001477 |
S | 1063 | L1063F | ttG | ttT | 36 | 36 | AY.25 | 0.000217 |
S | 1063 | L1063F | ttG | ttT | 31 | 31 | AY.102 | 0.000822 |
S | 1063 | L1063V | Ttg | Gtg | 31 | 31 | AY.4 | 0.000048 |
S | 1063 | L1063F | ttG | ttT | 31 | 31 | B.1.134 | 0.169399 |
S | 1063 | L1063F | ttG | ttT | 30 | 30 | B.1.1.37 | 0.005786 |
S | 1063 | L1063F | ttG | ttT | 29 | 30 | B.1.177 | 0.000382 |
S | 1063 | L1063F | ttG | ttC | 1 | 30 | B.1.177 | 0.000013 |
S | 1063 | L1063L | ttG | ttA | 26 | 27 | AY.3 | 0.000259 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 27 | AY.3 | 0.00001 |
S | 1063 | L1063F | ttG | ttT | 25 | 25 | AY.121 | 0.003383 |
S | 1063 | L1063F | ttG | ttT | 25 | 25 | B.1.177.54 | 0.015161 |
S | 1063 | L1063F | ttG | ttT | 15 | 24 | AY.70 | 0.003128 |
S | 1063 | L1063F | ttG | ttC | 9 | 24 | AY.70 | 0.001877 |
S | 1063 | L1063F | ttG | ttT | 22 | 23 | AY.3 | 0.000219 |
S | 1063 | L1063F | ttG | ttC | 1 | 23 | AY.3 | 0.00001 |
S | 1063 | L1063F | ttG | ttT | 22 | 22 | AY.4.2 | 0.000477 |
S | 1063 | L1063F | ttG | ttT | 21 | 21 | AY.9 | 0.001419 |
S | 1063 | L1063F | ttG | ttT | 21 | 21 | AY.9.2 | 0.000771 |
S | 1063 | L1063F | ttG | ttT | 20 | 20 | AY.39 | 0.000494 |
S | 1063 | L1063F | ttG | ttT | 20 | 20 | B.1.177.10 | 0.017559 |
S | 1063 | L1063L | ttG | ttA | 11 | 20 | B.1.617.2 | 0.000041 |
S | 1063 | L1063L | Ttg | Ctg | 9 | 20 | B.1.617.2 | 0.000034 |
S | 1063 | L1063del | TTG | --- | 18 | 18 | All | 0.000003 |
S | 1063 | L1063F | ttG | ttT | 17 | 17 | AE.8 | 0.008313 |
S | 1063 | L1063L | ttG | ttA | 15 | 17 | AY.43 | 0.000066 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 17 | AY.43 | 0.000009 |
S | 1063 | L1063F | ttG | ttT | 15 | 16 | B.1.1 | 0.000272 |
S | 1063 | L1063F | ttG | ttC | 1 | 16 | B.1.1 | 0.000018 |
S | 1063 | L1063F | ttG | ttT | 15 | 15 | AY.29 | 0.000237 |
S | 1063 | L1063F | ttG | ttT | 15 | 15 | B.1.221 | 0.001065 |
S | 1063 | L1063F | ttG | ttT | 14 | 14 | B.1.160 | 0.000437 |
S | 1063 | L1063L | ttG | ttA | 14 | 14 | B.1.258.14 | 0.013725 |
S | 1063 | L1063L | ttG | ttA | 12 | 13 | B.1.526 | 0.000282 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 13 | B.1.526 | 0.000024 |
S | 1063 | L1063F | ttG | ttT | 12 | 12 | AY.3.1 | 0.001023 |
S | 1063 | L1063F | ttG | ttT | 12 | 12 | AY.42 | 0.000483 |
S | 1063 | L1063L | ttG | ttA | 9 | 11 | B.1.596 | 0.000784 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 11 | B.1.596 | 0.000174 |
S | 1063 | L1063F | ttG | ttT | 11 | 11 | P.1 | 0.000173 |
S | 1063 | L1063F | ttG | ttT | 10 | 10 | AY.46 | 0.001041 |
S | 1063 | L1063L | Ttg | Ctg | 7 | 10 | B.1 | 0.000064 |
S | 1063 | L1063L | ttG | ttA | 3 | 10 | B.1 | 0.000027 |
S | 1063 | L1063L | Ttg | Ctg | 6 | 10 | B.1.1 | 0.000109 |
S | 1063 | L1063L | ttG | ttA | 4 | 10 | B.1.1 | 0.000073 |
S | 1063 | L1063F | ttG | ttT | 10 | 10 | B.1.1.519 | 0.000397 |
S | 1063 | L1063F | ttG | ttT | 10 | 10 | B.1.36.31 | 0.017513 |
S | 1063 | L1063F | ttG | ttT | 9 | 9 | AY.39.1 | 0.000357 |
S | 1063 | L1063F | ttG | ttT | 9 | 9 | AY.75 | 0.000504 |
S | 1063 | L1063L | Ttg | Ctg | 9 | 9 | AY.91 | 0.006574 |
S | 1063 | L1063F | ttG | ttT | 9 | 9 | AY.99.2 | 0.000829 |
S | 1063 | L1063F | ttG | ttT | 9 | 9 | B.1.1.189 | 0.013616 |
S | 1063 | L1063F | ttG | ttT | 8 | 8 | AY.16 | 0.003037 |
S | 1063 | L1063F | ttG | ttT | 8 | 8 | AY.27 | 0.000518 |
S | 1063 | L1063L | ttG | ttA | 8 | 8 | B.1.160 | 0.00025 |
S | 1063 | L1063L | Ttg | Ctg | 7 | 8 | B.1.2 | 0.000062 |
S | 1063 | L1063L | ttG | ttA | 1 | 8 | B.1.2 | 0.000009 |
S | 1063 | L1063F | ttG | ttT | 8 | 8 | B.1.632 | 0.053691 |
S | 1063 | L1063M | Ttg | Atg | 7 | 7 | All | 0.000001 |
S | 1063 | L1063F | ttG | ttT | 7 | 7 | AY.120 | 0.00026 |
S | 1063 | L1063F | ttG | ttT | 7 | 7 | AY.13 | 0.001127 |
S | 1063 | L1063F | ttG | ttT | 6 | 7 | AY.23 | 0.000418 |
S | 1063 | L1063F | ttG | ttC | 1 | 7 | AY.23 | 0.00007 |
S | 1063 | L1063F | ttG | ttT | 7 | 7 | AY.61 | 0.000733 |
S | 1063 | L1063F | ttG | ttT | 7 | 7 | B.1.1.284 | 0.000752 |
S | 1063 | L1063L | Ttg | Ctg | 4 | 7 | P.1 | 0.000063 |
S | 1063 | L1063L | ttG | ttA | 3 | 7 | P.1 | 0.000047 |
S | 1063 | L1063F | ttG | ttT | 7 | 7 | W.4 | 0.009459 |
S | 1063 | L1063F | ttG | ttT | 6 | 6 | AY.100 | 0.000276 |
S | 1063 | L1063L | ttG | ttA | 4 | 6 | AY.102 | 0.000106 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 6 | AY.102 | 0.000053 |
S | 1063 | L1063F | ttG | ttT | 6 | 6 | AY.14 | 0.000528 |
S | 1063 | L1063L | Ttg | Ctg | 3 | 6 | AY.25 | 0.000018 |
S | 1063 | L1063L | ttG | ttA | 3 | 6 | AY.25 | 0.000018 |
S | 1063 | L1063F | ttG | ttT | 6 | 6 | AY.26 | 0.00017 |
S | 1063 | L1063L | Ttg | Ctg | 6 | 6 | AY.86 | 0.004979 |
S | 1063 | L1063F | ttG | ttT | 6 | 6 | AY.94 | 0.002656 |
S | 1063 | L1063L | ttG | ttA | 6 | 6 | B | 0.000767 |
S | 1063 | L1063F | ttG | ttT | 6 | 6 | B.1.427 | 0.000303 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | AY.118 | 0.000313 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | AY.12 | 0.00158 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | AY.7.1 | 0.000564 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | AY.98 | 0.000395 |
S | 1063 | L1063V | Ttg | Gtg | 5 | 5 | B.1.1.7 | 0.000004 |
S | 1063 | L1063L | ttG | ttA | 4 | 5 | B.1.243 | 0.000278 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 5 | B.1.243 | 0.00007 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | B.1.36.10 | 0.023923 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | B.1.398 | 0.014881 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | B.1.429 | 0.000118 |
S | 1063 | L1063F | ttG | ttT | 5 | 5 | B.1.525 | 0.000566 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | A.2.5 | 0.001996 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | AE.2 | 0.235294 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | AY.4.4 | 0.001637 |
S | 1063 | L1063L | Ttg | Ctg | 4 | 4 | AY.4.5 | 0.00043 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | AY.41 | 0.001176 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 4 | AY.44 | 0.000012 |
S | 1063 | L1063L | ttG | ttA | 2 | 4 | AY.44 | 0.000012 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | AY.45 | 0.000487 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | AY.46.6 | 0.000289 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | AY.69 | 0.000747 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | AY.85 | 0.001709 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | B.1.1.294 | 0.005063 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | B.1.177.66 | 0.166667 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | B.1.369 | 0.001141 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | B.1.438.1 | 0.000429 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | B.1.517 | 0.001708 |
S | 1063 | L1063F | ttG | ttT | 4 | 4 | B.1.637 | 0.000292 |
S | 1063 | L1063del1 | Ttg | -tg | 3 | 3 | All | 0.000001 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.116 | 0.00086 |
S | 1063 | L1063L | ttG | ttA | 3 | 3 | AY.16 | 0.001139 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.24 | 0.001293 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.32 | 0.001597 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.33 | 0.0002 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.34 | 0.000291 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.36 | 0.000445 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.38 | 0.001498 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.40 | 0.002893 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.6 | 0.000123 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | AY.9.1 | 0.000251 |
S | 1063 | L1063del | TTG | --- | 3 | 3 | B.1.1.7 | 0.000003 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | B.1.177.21 | 0.000229 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | B.1.177.44 | 0.001557 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | B.1.195 | 0.015075 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | B.1.351 | 0.000089 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 3 | B.1.427 | 0.000101 |
S | 1063 | L1063L | ttG | ttA | 1 | 3 | B.1.427 | 0.00005 |
S | 1063 | L1063L | ttG | ttA | 3 | 3 | B.1.429 | 0.000071 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | B.1.456 | 0.009804 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | B.1.526 | 0.000071 |
S | 1063 | L1063F | ttG | ttT | 3 | 3 | B.1.599 | 0.010949 |
S | 1063 | L1063del2 | TTG | --A | 1 | 2 | All | 0 |
S | 1063 | L1063del2 | TTg | --g | 1 | 2 | All | 0 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | AU.1 | 0.002532 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 2 | AY.103 | 0.000006 |
S | 1063 | L1063L | ttG | ttA | 1 | 2 | AY.103 | 0.000006 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | AY.119 | 0.000071 |
S | 1063 | L1063L | ttG | ttA | 2 | 2 | AY.14 | 0.000176 |
S | 1063 | L1063L | ttG | ttA | 1 | 2 | AY.23 | 0.00007 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 2 | AY.23 | 0.00007 |
S | 1063 | L1063L | ttG | ttA | 2 | 2 | AY.26 | 0.000057 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 2 | AY.39 | 0.000025 |
S | 1063 | L1063L | ttG | ttA | 1 | 2 | AY.39 | 0.000025 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | AY.4.3 | 0.001684 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 2 | AY.46 | 0.000208 |
S | 1063 | L1063M | Ttg | Atg | 2 | 2 | AY.46.4 | 0.000329 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | AY.47 | 0.000062 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | AY.5.3 | 0.000675 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | AY.5.4 | 0.000553 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | AY.75.1 | 0.000361 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 2 | AY.9 | 0.000135 |
S | 1063 | L1063M | Ttg | Atg | 2 | 2 | B.1 | 0.000018 |
S | 1063 | L1063L | Ttg | Ctg | 2 | 2 | B.1.1.121 | 0.004854 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.1.28 | 0.000622 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.1.288 | 0.003831 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.177.7 | 0.00033 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.243 | 0.000139 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.258.15 | 0.037736 |
S | 1063 | L1063L | ttG | ttA | 2 | 2 | B.1.258.17 | 0.000208 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.258.17 | 0.000208 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.36.19 | 0.018519 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.36.8 | 0.002 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.466.2 | 0.000782 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.499 | 0.002101 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.575 | 0.000607 |
S | 1063 | L1063L | ttG | ttA | 2 | 2 | B.1.575 | 0.000607 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | B.1.9.5 | 0.011364 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | C.16 | 0.002121 |
S | 1063 | L1063F | ttG | ttT | 2 | 2 | C.37 | 0.000232 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | A.2.3 | 0.004739 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AH.3 | 0.003802 |
S | 1063 | L1063S | tTg | tCg | 1 | 1 | All | 0 |
S | 1063 | L1063W | tTg | tGg | 1 | 1 | All | 0 |
S | 1063 | L1063V | Ttg | Gtg | 1 | 1 | AY.100 | 0.000046 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | AY.100 | 0.000046 |
S | 1063 | L1063V | Ttg | Gtg | 1 | 1 | AY.102 | 0.000027 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.109 | 0.00074 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | AY.111 | 0.000183 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | AY.120 | 0.000037 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.120.1 | 0.000321 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | AY.16.1 | 0.00047 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | AY.19 | 0.00114 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.19 | 0.00114 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | AY.20 | 0.000039 |
S | 1063 | L1063M | Ttg | Atg | 1 | 1 | AY.25 | 0.000006 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | AY.28 | 0.00189 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | AY.29 | 0.000016 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | AY.34 | 0.000097 |
S | 1063 | L1063M | Ttg | Atg | 1 | 1 | AY.4 | 0.000002 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | AY.4 | 0.000002 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.4.5 | 0.000107 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | AY.42 | 0.00004 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1063 | L1063del1 | Ttg | -tg | 1 | 1 | AY.44 | 0.000006 |
S | 1063 | L1063del2 | TTG | --A | 1 | 1 | AY.44 | 0.000006 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 1063 | L1063del1 | Ttg | -tg | 1 | 1 | AY.46.2 | 0.000635 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | AY.47 | 0.000031 |
S | 1063 | L1063V | Ttg | Gtg | 1 | 1 | AY.47 | 0.000031 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | AY.5 | 0.000021 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.54 | 0.000095 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.55 | 0.000917 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.64 | 0.000595 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | AY.65 | 0.000533 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.71 | 0.000475 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | AY.75 | 0.000056 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.90 | 0.000684 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.97 | 0.001701 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AY.98.1 | 0.000048 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | AY.99.2 | 0.000092 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AZ.2 | 0.000821 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | AZ.3 | 0.00152 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B | 0.000128 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | B.1 | 0.000009 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.1.1 | 0.000327 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.153 | 0.001095 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.174 | 0.003378 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.207 | 0.001182 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.237 | 0.005405 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.1.258 | 0.003257 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.297 | 0.002237 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.347 | 0.018182 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.363 | 0.005988 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.1.420 | 0.001006 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.432 | 0.001266 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.487 | 0.005587 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.1.63 | 0.000386 |
S | 1063 | L1063W | tTg | tGg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.1.75 | 0.010638 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.177 | 0.000013 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | B.1.177.5 | 0.001242 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | B.1.177.60 | 0.000218 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.177.75 | 0.001041 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.177.81 | 0.000189 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.177.86 | 0.000183 |
S | 1063 | L1063del2 | TTg | --g | 1 | 1 | B.1.2 | 0.000009 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.213 | 0.014925 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | B.1.22 | 0.001318 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.234 | 0.000132 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.234 | 0.000132 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.240 | 0.000216 |
S | 1063 | L1063V | Ttg | Gtg | 1 | 1 | B.1.243 | 0.00007 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.258.14 | 0.00098 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.258.22 | 0.002667 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.263 | 0.047619 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.311 | 0.000275 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.329 | 0.000608 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | B.1.351 | 0.00003 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.367 | 0.000792 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.371 | 0.001122 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.385 | 0.010638 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.402 | 0.009804 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.411 | 0.003704 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.421 | 0.007463 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.462 | 0.007246 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.468 | 0.005714 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.471 | 0.002732 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | B.1.497 | 0.000315 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | B.1.525 | 0.000113 |
S | 1063 | L1063del1 | Ttg | -tg | 1 | 1 | B.1.526 | 0.000024 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.564 | 0.000426 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.587 | 0.001898 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.596 | 0.000087 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | B.1.609 | 0.000479 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.1.630 | 0.005236 |
S | 1063 | L1063M | Ttg | Atg | 1 | 1 | B.1.637 | 0.000073 |
S | 1063 | L1063S | tTg | tCg | 1 | 1 | B.40 | 0.000364 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | B.6.6 | 0.000889 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | C.14 | 0.004329 |
S | 1063 | L1063L | ttG | ttA | 1 | 1 | C.32 | 0.023256 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | C.36 | 0.000911 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | C.37 | 0.000116 |
S | 1063 | L1063L | Ttg | Ctg | 1 | 1 | D.2 | 0.000075 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | D.2 | 0.000075 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | P.1.14 | 0.000048 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | P.1.15 | 0.000232 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1063 | L1063V | Ttg | Gtg | 1 | 1 | P.1.4 | 0.000977 |
S | 1063 | L1063del | TTG | --- | 1 | 1 | Q.1 | 0.000126 |
S | 1063 | L1063F | ttG | ttT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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