CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1057 & Codon = ccC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1057P1057PsynccTccC194417960.92386824731-24733

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1057P1057PccTccC17961944All0.000344
S1057P1057PccTccC11351135B.1.10.02059
S1057P1057PccTccC134203B.1.1.70.00012
S1057P1057PccTccC103107AY.40.00016
S1057P1057PccTccC5858B.1.1.3381
S1057P1057PccTccC5454B.1.1.5220.931034
S1057P1057PccTccC2527AY.1030.000155
S1057P1057PccTccC2222AY.30.000219
S1057P1057PccTccC2121B.1.1.10.006861
S1057P1057PccTccC1720B.1.2580.001131
S1057P1057PccTccC2020B.1.258.140.019608
S1057P1057PccTccC1717B.1.1.3190.298246
S1057P1057PccTccC1516AY.4.20.000325
S1057P1057PccTccC1012AY.430.000044
S1057P1057PccTccC111AY.1190.000035
S1057P1057PccTccC711B.10.000064
S1057P1057PccTccC810B.1.617.20.00003
S1057P1057PccTccC99B.1.1.2690.012179
S1057P1057PccTccC88B.1.1.1610.028269
S1057P1057PccTccC88B.1.1.2220.001632
S1057P1057PccTccC88B.1.1.2240.114286
S1057P1057PccTccC77B.1.1.4090.01983
S1057P1057PccTccC77B.1.1.4470.25
S1057P1057PccTccC66AY.1110.001099
S1057P1057PccTccC55B.1.1.100.005574
S1057P1057PccTccC55B.1.1.1940.024752
S1057P1057PccTccC15B.1.1.4160.000905
S1057P1057PccTccC45P.10.000063
S1057P1057PccTccC14AY.250.000006
S1057P1057PccTccC34AY.50.000062
S1057P1057PccTccC44B.1.1.2770.003035
S1057P1057PccTccC44B.1.1770.000053
S1057P1057PccTccC33AY.1200.000112
S1057P1057PccTccC33AY.39.10.000119
S1057P1057PccTccC13AY.440.000006
S1057P1057PccTccC33B0.000383
S1057P1057PccTccC33B.1.1.280.000934
S1057P1057PccTccC23B.1.20.000018
S1057P1057PccTccC33C.360.002732
S1057P1057PccTccC22AY.160.000759
S1057P1057PccTccC12AY.390.000025
S1057P1057PccTccC22B.1.1.1980.002937
S1057P1057PccTccC22B.1.1.2540.022472
S1057P1057PccTccC22B.1.1.2980.001724
S1057P1057PccTccC22B.1.1.330.000842
S1057P1057PccTccC22B.1.1.3360.033333
S1057P1057PccTccC22B.1.1.3850.008929
S1057P1057PccTccC22B.1.1.4190.014815
S1057P1057PccTccC22B.1.1.4300.083333
S1057P1057PccTccC22B.1.1.80.007168
S1057P1057PccTccC22B.1.360.000292
S1057P1057PccTccC22B.1.3670.001585
S1057P1057PccTccC12B.1.4290.000024
S1057P1057PccTccC11A0.000387
S1057P1057PccTccC11A.2.20.001689
S1057P1057PccTccC11AY.4.10.000737
S1057P1057PccTccC11AY.4.2.10.000149
S1057P1057PccTccC11AY.550.000917
S1057P1057PccTccC11AY.860.00083
S1057P1057PccTccC11AY.9.20.000037
S1057P1057PccTccC11B.1.1.1220.045455
S1057P1057PccTccC11B.1.1.1370.0125
S1057P1057PccTccC11B.1.1.1450.037037
S1057P1057PccTccC11B.1.1.1480.008772
S1057P1057PccTccC11B.1.1.2990.012195
S1057P1057PccTccC11B.1.1.3880.045455
S1057P1057PccTccC11B.1.1.3970.002252
S1057P1057PccTccC11B.1.1.3980.003226
S1057P1057PccTccC11B.1.1.4070.041667
S1057P1057PccTccC11B.1.1.4100.037037
S1057P1057PccTccC11B.1.1.4220.045455
S1057P1057PccTccC11B.1.1.540.003021
S1057P1057PccTccC11B.1.1.700.000341
S1057P1057PccTccC11B.1.1.890.006061
S1057P1057PccTccC11B.1.2060.000816
S1057P1057PccTccC11B.1.617.10.000129
S1057P1057PccTccC11B.1.6210.000089
S1057P1057PccTccC11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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