CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1052

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1052F1052FsynttCttT10871087124716-24718
S1052F1052LnonsynttCttA6343990.62933824716-24718
S1052F1052LnonsynTtcCtc6342310.36435324716-24718
S1052F1052LnonsynTtCCtT63440.0063091524716-24718
S1052F1052YnonsyntTctAc4414390.99546524716-24718
S1052F1052YnonsyntTCtAT44120.0045351524716-24718
S1052F1052deldelTTC---3535124716-24718
S1052F1052InonsynTtcAtc33310.93939424716-24718
S1052F1052InonsynTtCAtA3310.03030324716-24718
S1052F1052InonsynTtCAtT3310.03030324716-24718
S1052F1052VnonsynTtcGtc24230.95833324716-24718
S1052F1052VnonsynTtCGtT2410.041666724716-24718
S1052F1052del1delttCtt-870.87524716-24718
S1052F1052del1delTtCCt-810.12524716-24718
S1052F1052SnonsyntTctCc540.824716-24718
S1052F1052SnonsynTTcAGc510.224716-24718
S1052F1052DnonsynTTCGAT210.524716-24718
S1052F1052DnonsynTTcGAc210.524716-24718
S1052F1052HnonsynTTCCAT210.524716-24718
S1052F1052HnonsynTTcCAc210.524716-24718
S1052F1052KnonsynTTCAAA11124716-24718
S1052F1052NnonsynTTcAAc11124716-24718
S1052F1052XnonsyntTCtAA11124716-24718

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1052F1052FttCttT10871087All0.000208
S1052F1052LttCttA399634All0.000076
S1052F1052LTtcCtc231634All0.000044
S1052F1052LTtCCtT4634All0.000001
S1052F1052YtTctAc439441All0.000084
S1052F1052YtTCtAT2441All0
S1052F1052YtTctAc421421B.1.6270.850505
S1052F1052LttCttA363372B.10.003325
S1052F1052LTtcCtc8372B.10.000073
S1052F1052LTtCCtT1372B.10.000009
S1052F1052FttCttT226226B.1.6370.016514
S1052F1052FttCttT9797B.1.617.20.000365
S1052F1052FttCttT9595B.1.1.70.000085
S1052F1052FttCttT8383AY.40.000129
S1052F1052LTtcCtc7478AY.40.000115
S1052F1052LttCttA478AY.40.000006
S1052F1052FttCttT7777AY.30.000766
S1052F1052FttCttT5858B.10.000531
S1052F1052FttCttT4747AY.250.000283
S1052F1052FttCttT4646B.1.4270.002323
S1052F1052FttCttT3939B.1.20.000343
S1052F1052delTTC---3535All0.000007
S1052F1052LTtcCtc3134B.1.20.000273
S1052F1052LttCttA334B.1.20.000026
S1052F1052ITtcAtc3133All0.000006
S1052F1052ITtCAtT133All0
S1052F1052ITtCAtA133All0
S1052F1052VTtcGtc2324All0.000004
S1052F1052VTtCGtT124All0
S1052F1052FttCttT2222AY.440.000134
S1052F1052FttCttT1919AY.610.001991
S1052F1052LTtcCtc1717AY.30.000169
S1052F1052FttCttT1717AY.540.001621
S1052F1052LTtcCtc1616C.370.001857
S1052F1052FttCttT1515AY.1030.000093
S1052F1052FttCttT1515AY.200.000583
S1052F1052FttCttT1414AY.1000.000644
S1052F1052FttCttT1414AY.430.000062
S1052F1052LTtcCtc1414B.1.351.20.004236
S1052F1052FttCttT1212B.1.3510.000357
S1052F1052delTTC---1111B.1.1.70.00001
S1052F1052VTtcGtc1111B.1.177.790.025761
S1052F1052FttCttT1010AY.1020.000265
S1052F1052FttCttT1010AY.920.002873
S1052F1052ITtcAtc1010B.1.177.860.001835
S1052F1052FttCttT99B.1.1.2220.001836
S1052F1052del1ttCtt-78All0.000001
S1052F1052del1TtCCt-18All0
S1052F1052LTtcCtc88AY.420.000322
S1052F1052LTtcCtc68B.1.1.70.000005
S1052F1052LttCttA28B.1.1.70.000002
S1052F1052FttCttT77AY.90.000473
S1052F1052ITtcAtc66AY.1000.000276
S1052F1052FttCttT66AY.470.000187
S1052F1052FttCttT66AY.520.004886
S1052F1052FttCttT66B.1.1.330.002525
S1052F1052LTtcCtc66B.1.1600.000187
S1052F1052FttCttT66B.1.1770.000079
S1052F1052FttCttT66B.1.2350.015113
S1052F1052FttCttT66B.1.416.10.009375
S1052F1052LTtcCtc66B.1.617.20.000023
S1052F1052YtTctAc350.166667
S1052F1052YtTCtAT250.111111
S1052F1052StTctCc45All0.000001
S1052F1052STTcAGc15All0
S1052F1052LTtcCtc45AY.440.000024
S1052F1052LttCttA15AY.440.000006
S1052F1052YtTctAc55B.10.000046
S1052F1052VTtcGtc55B.1.1.70.000004
S1052F1052ITtcAtc55B.1.617.20.000019
S1052F1052FttCttT55P.10.000079
S1052F1052FttCttT55R.10.00045
S1052F1052LTtcCtc34AY.1030.000019
S1052F1052LttCttA14AY.1030.000006
S1052F1052FttCttT44AY.3.10.000341
S1052F1052FttCttT44AY.350.000932
S1052F1052LTtcCtc44AY.510.003636
S1052F1052FttCttT44AY.980.000316
S1052F1052FttCttT44B.1.1.2840.00043
S1052F1052LTtcCtc44B.1.1.5190.000159
S1052F1052FttCttT44B.1.2430.000278
S1052F1052FttCttT330.166667
S1052F1052LttCttA130.055556
S1052F1052LTtCCtT130.055556
S1052F1052LTtcCtc130.055556
S1052F1052ITtcAtc33AY.1170.000254
S1052F1052FttCttT33AY.1200.000112
S1052F1052LTtcCtc23AY.250.000012
S1052F1052LttCttA13AY.250.000006
S1052F1052ITtcAtc33AY.3.10.000256
S1052F1052FttCttT33AY.300.001187
S1052F1052FttCttT33AY.390.000074
S1052F1052delTTC---33AY.40.000005
S1052F1052YtTctAc33AY.40.000005
S1052F1052FttCttT33AY.4.20.000065
S1052F1052FttCttT33AY.46.40.000494
S1052F1052FttCttT33AY.50.000062
S1052F1052FttCttT33AY.75.10.000541
S1052F1052LTtcCtc33B0.000383
S1052F1052LttCttA33B.1.10.000054
S1052F1052LttCttA33B.1.177.70.000495
S1052F1052FttCttT33B.1.177.720.010169
S1052F1052DTTcGAc120.055556
S1052F1052DTTCGAT120.055556
S1052F1052HTTCCAT120.055556
S1052F1052VTtCGtT120.055556
S1052F1052ITtcAtc120.055556
S1052F1052HTTcCAc120.055556
S1052F1052ITtCAtA120.055556
S1052F1052VTtcGtc120.055556
S1052F1052DTTcGAc12All0
S1052F1052DTTCGAT12All0
S1052F1052HTTCCAT12All0
S1052F1052HTTcCAc12All0
S1052F1052FttCttT22AY.1090.001479
S1052F1052FttCttT22AY.1170.000169
S1052F1052VTtcGtc22AY.1180.000125
S1052F1052FttCttT22AY.230.000139
S1052F1052LTtcCtc22AY.390.000049
S1052F1052ITtcAtc22AY.40.000003
S1052F1052delTTC---22AY.430.000009
S1052F1052YtTctAc22AY.430.000009
S1052F1052LTtcCtc22AY.430.000009
S1052F1052FttCttT22AY.60.000082
S1052F1052FttCttT22AY.840.000875
S1052F1052StTctCc22B0.000256
S1052F1052FttCttT22B.1.10.000036
S1052F1052LTtcCtc22B.1.1.2140.000111
S1052F1052FttCttT22B.1.1.3160.00185
S1052F1052delTTC---22B.1.1770.000026
S1052F1052FttCttT22B.1.2210.000142
S1052F1052LTtcCtc12B.1.2210.000071
S1052F1052LTtCCtT12B.1.2210.000071
S1052F1052FttCttT22B.1.36.290.001035
S1052F1052FttCttT22B.1.3890.002004
S1052F1052FttCttT22B.1.3960.001411
S1052F1052FttCttT22B.1.5260.000047
S1052F1052LTtcCtc22B.1.5950.000522
S1052F1052FttCttT22B.1.5960.000174
S1052F1052FttCttT22B.1.617.10.000258
S1052F1052LTtcCtc22B.1.6210.000177
S1052F1052LTtcCtc22P.10.000032
S1052F1052FttCttT22P.1.170.000324
S1052F1052FttCttT22S.10.009901
S1052F1052NTTcAAc110.055556
S1052F1052XtTCtAA110.055556
S1052F1052KTTCAAA110.055556
S1052F1052FttCttT11A.2.50.000499
S1052F1052XtTCtAA11All0
S1052F1052NTTcAAc11All0
S1052F1052KTTCAAA11All0
S1052F1052FttCttT11AY.10.000396
S1052F1052VTtcGtc11AY.1030.000006
S1052F1052FttCttT11AY.1050.000643
S1052F1052FttCttT11AY.1060.000335
S1052F1052delTTC---11AY.1110.000183
S1052F1052LttCttA11AY.1190.000035
S1052F1052delTTC---11AY.1200.000037
S1052F1052LTtcCtc11AY.120.2.10.000498
S1052F1052del1ttCtt-11AY.230.00007
S1052F1052LTtcCtc11AY.260.000028
S1052F1052YtTctAc11AY.290.000016
S1052F1052FttCttT11AY.29.10.000221
S1052F1052FttCttT11AY.330.000067
S1052F1052FttCttT11AY.34.10.00051
S1052F1052LTtcCtc11AY.4.20.000022
S1052F1052LTtcCtc11AY.4.40.000409
S1052F1052LTtcCtc11AY.4.50.000107
S1052F1052delTTC---11AY.4.50.000107
S1052F1052FttCttT11AY.420.00004
S1052F1052LttCttA11AY.450.000122
S1052F1052FttCttT11AY.450.000122
S1052F1052FttCttT11AY.460.000104
S1052F1052delTTC---11AY.46.20.000635
S1052F1052del1ttCtt-11AY.480.000465
S1052F1052FttCttT11AY.480.000465
S1052F1052ITtcAtc11AY.550.000917
S1052F1052FttCttT11AY.710.000475
S1052F1052delTTC---11AY.750.000056
S1052F1052FttCttT11AY.870.000833
S1052F1052FttCttT11AY.9.20.000037
S1052F1052delTTC---11AY.930.000273
S1052F1052YtTctAc11B0.000128
S1052F1052delTTC---11B.10.000009
S1052F1052StTctCc11B.10.000009
S1052F1052VTtcGtc11B.10.000009
S1052F1052YtTctAc11B.1.10.000018
S1052F1052FttCttT11B.1.1.1390.022727
S1052F1052FttCttT11B.1.1.1700.001247
S1052F1052delTTC---11B.1.1.2360.006897
S1052F1052FttCttT11B.1.1.250.000569
S1052F1052del1ttCtt-11B.1.1.280.000311
S1052F1052FttCttT11B.1.1.3170.000412
S1052F1052delTTC---11B.1.1.370.000193
S1052F1052LTtCCtT11B.1.1.370.000193
S1052F1052VTtcGtc11B.1.1.3850.004464
S1052F1052LttCttA11B.1.1.3870.058824
S1052F1052LTtcCtc11B.1.1.4850.016667
S1052F1052FttCttT11B.1.1.5190.00004
S1052F1052YtTctAc11B.1.1.70.000001
S1052F1052del1ttCtt-11B.1.1.70.000001
S1052F1052FttCttT11B.1.1110.001175
S1052F1052LTtcCtc11B.1.1510.011111
S1052F1052FttCttT11B.1.1600.000031
S1052F1052StTctCc11B.1.1770.000013
S1052F1052delTTC---11B.1.177.180.00116
S1052F1052delTTC---11B.1.177.50.001242
S1052F1052ITtCAtT11B.1.177.650.000665
S1052F1052LttCttA11B.1.1900.01
S1052F1052del1ttCtt-11B.1.20.000009
S1052F1052LttCttA11B.1.258.170.000104
S1052F1052LttCttA11B.1.3110.000275
S1052F1052LttCttA11B.1.3260.007576
S1052F1052FttCttT11B.1.3400.004292
S1052F1052LttCttA11B.1.3400.004292
S1052F1052LTtcCtc11B.1.3510.00003
S1052F1052delTTC---11B.1.3510.00003
S1052F1052FttCttT11B.1.351.30.000876
S1052F1052FttCttT11B.1.360.000146
S1052F1052LTtcCtc11B.1.36.360.000602
S1052F1052LttCttA11B.1.3910.001127
S1052F1052delTTC---11B.1.4150.014286
S1052F1052LttCttA11B.1.4290.000024
S1052F1052del1ttCtt-11B.1.4290.000024
S1052F1052LttCttA11B.1.4320.011236
S1052F1052VTtcGtc11B.1.4590.004082
S1052F1052LttCttA11B.1.4620.007246
S1052F1052LttCttA11B.1.5210.004975
S1052F1052LTtcCtc11B.1.5260.000024
S1052F1052FttCttT11B.1.5370.02
S1052F1052LttCttA11B.1.5640.000426
S1052F1052LttCttA11B.1.5960.000087
S1052F1052LTtcCtc11B.1.6010.030303
S1052F1052del1ttCtt-11B.1.617.20.000004
S1052F1052STTcAGc11B.1.617.20.000004
S1052F1052delTTC---11B.1.617.20.000004
S1052F1052FttCttT11B.1.6330.041667
S1052F1052FttCttT11B.1.9.40.006135
S1052F1052YtTctAc11B.550.00295
S1052F1052LttCttA11B.6.60.000889
S1052F1052FttCttT11C.350.000774
S1052F1052delTTC---11C.370.000116
S1052F1052FttCttT11D.20.000075
S1052F1052delTTC---11P.1.150.000232
S1052F1052del1TtCCt-11Q.10.000126
S1052F1052FttCttT11Q.80.000165
S1052F1052delTTC---11Q.80.000165
S1052F1052LttCttA11R.10.00009