CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1045

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	1045	K1045K		syn	aaG	aaA	3160	3160	1	24695-24697
S	1045	K1045N		nonsyn	aaG	aaT	559	557	0.996422	24695-24697
S	1045	K1045N		nonsyn	aaG	aaC	559	2	0.00357782	24695-24697
S	1045	K1045R		nonsyn	aAg	aGg	338	334	0.988166	24695-24697
S	1045	K1045R		nonsyn	AAg	CGg	338	3	0.00887574	24695-24697
S	1045	K1045R		nonsyn	aAG	aGA	338	1	0.00295858	24695-24697
S	1045	K1045Q		nonsyn	Aag	Cag	79	79	1	24695-24697
S	1045	K1045M		nonsyn	aAg	aTg	52	52	1	24695-24697
S	1045	K1045E		nonsyn	Aag	Gag	42	42	1	24695-24697
S	1045	K1045del		del	AAG	---	37	37	1	24695-24697
S	1045	K1045T		nonsyn	aAg	aCg	29	29	1	24695-24697
S	1045	K1045P		nonsyn	AAg	CCg	3	3	1	24695-24697
S	1045	K1045del2		del	AAg	--g	2	2	1	24695-24697
S	1045	K1045del1		del	aaG	aa-	2	2	1	24695-24697
S	1045	K1045L		nonsyn	AAg	TTg	2	1	0.5	24695-24697
S	1045	K1045L		nonsyn	AAg	CTg	2	1	0.5	24695-24697
S	1045	K1045G		nonsyn	AAg	GGg	1	1	1	24695-24697
S	1045	K1045S		nonsyn	AAg	TCg	1	1	1	24695-24697

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	1045	K1045K	aaG	aaA	3160	3160	All	0.000604
S	1045	K1045K	aaG	aaA	1963	1963	A.2.5	0.979541
S	1045	K1045K	aaG	aaA	628	628	A.2.5.2	0.987421
S	1045	K1045N	aaG	aaT	557	559	All	0.000107
S	1045	K1045N	aaG	aaC	2	559	All	0
S	1045	K1045R	aAg	aGg	334	338	All	0.000064
S	1045	K1045R	AAg	CGg	3	338	All	0.000001
S	1045	K1045R	aAG	aGA	1	338	All	0
S	1045	K1045K	aaG	aaA	208	208	A.2.5.1	1
S	1045	K1045N	aaG	aaT	126	126	AY.4	0.000196
S	1045	K1045K	aaG	aaA	95	95	A.2.5.3	0.979381
S	1045	K1045N	aaG	aaT	95	95	B.1.177.38	0.989583
S	1045	K1045Q	Aag	Cag	79	79	All	0.000015
S	1045	K1045K	aaG	aaA	58	58	AY.4	0.00009
S	1045	K1045N	aaG	aaT	55	55	B.1.1.7	0.000049
S	1045	K1045M	aAg	aTg	52	52	All	0.00001
S	1045	K1045R	aAg	aGg	50	50	AY.98	0.00395
S	1045	K1045R	aAg	aGg	50	50	P.1.7	0.015964
S	1045	K1045K	aaG	aaA	48	48	B.1.1.7	0.000043
S	1045	K1045E	Aag	Gag	42	42	All	0.000008
S	1045	K1045Q	Aag	Cag	40	40	B.1.1.222	0.00816
S	1045	K1045del	AAG	---	37	37	All	0.000007
S	1045	K1045R	aAg	aGg	30	30	B.1.1.7	0.000027
S	1045	K1045T	aAg	aCg	29	29	All	0.000006
S	1045	K1045N	aaG	aaT	24	24	AY.98	0.001896
S	1045	K1045N	aaG	aaT	21	21	B.1.351	0.000624
S	1045	K1045N	aaG	aaT	19	19	AY.102	0.000504
S	1045	K1045R	aAg	aGg	19	19	B.1.177	0.00025
S	1045	K1045T	aAg	aCg	18	18	B.1.1	0.000327
S	1045	K1045R	aAg	aGg	17	17	R.1	0.00153
S	1045	K1045R	aAg	aGg	15	16	B.1	0.000137
S	1045	K1045R	AAg	CGg	1	16	B.1	0.000009
S	1045	K1045N	aaG	aaT	16	16	B.1.526	0.000376
S	1045	K1045N	aaG	aaT	15	16	B.1.617.2	0.000056
S	1045	K1045N	aaG	aaC	1	16	B.1.617.2	0.000004
S	1045	K1045M	aAg	aTg	15	15	B.1.1	0.000272
S	1045	K1045K	aaG	aaA	15	15	P.1	0.000236
S	1045	K1045K	aaG	aaA	14	14	AY.44	0.000085
S	1045	K1045Q	Aag	Cag	13	13	AY.61	0.001362
S	1045	K1045del	AAG	---	13	13	B.1.1.7	0.000012
S	1045	K1045N	aaG	aaT	12	12	AY.103	0.000075
S	1045	K1045R	aAg	aGg	12	12	AY.4	0.000019
S	1045	K1045N	aaG	aaT	12	12	B.1.429	0.000282
S	1045	K1045K	aaG	aaA	11	11	AY.47	0.000342
S	1045	K1045K	aaG	aaA	11	11	B.1.320	0.013699
S	1045	K1045N	aaG	aaT	10	10	B.1	0.000092
S	1045	K1045R	aAg	aGg	9	9	AY.44	0.000055
S	1045	K1045R	aAg	aGg	9	9	B.1.1	0.000163
S	1045	K1045R	aAg	aGg	9	9	B.1.160	0.000281
S	1045	K1045N	aaG	aaT	9	9	B.1.2	0.000079
S	1045	K1045R	aAg	aGg	8	8	AY.14	0.000704
S	1045	K1045N	aaG	aaT	8	8	AY.25	0.000048
S	1045	K1045Q	Aag	Cag	8	8	AY.33	0.000534
S	1045	K1045N	aaG	aaT	8	8	AY.44	0.000049
S	1045	K1045K	aaG	aaA	8	8	B.1.1.434	0.002788
S	1045	K1045R	aAg	aGg	7	7	AY.33	0.000467
S	1045	K1045R	aAg	aGg	7	7	AY.5.3	0.002362
S	1045	K1045K	aaG	aaA	7	7	B.1	0.000064
S	1045	K1045E	Aag	Gag	7	7	B.1.517	0.002989
S	1045	K1045R	aAg	aGg	6	6	AY.1	0.002374
S	1045	K1045E	Aag	Gag	6	6	AY.4	0.000009
S	1045	K1045N	aaG	aaT	6	6	AY.5	0.000124
S	1045	K1045N	aaG	aaT	6	6	B.1.1.519	0.000238
S	1045	K1045K	aaG	aaA	6	6	B.1.2	0.000053
S	1045	K1045K	aaG	aaA	6	6	B.1.36.29	0.003104
S	1045	K1045K	aaG	aaA	6	6	Q.4	0.002729
S	1045	K1045N	aaG	aaT	5	5	AY.120	0.000186
S	1045	K1045N	aaG	aaT	5	5	AY.121	0.000677
S	1045	K1045N	aaG	aaT	5	5	AY.39	0.000124
S	1045	K1045Q	Aag	Cag	5	5	AY.39	0.000124
S	1045	K1045K	aaG	aaA	5	5	B.1.1	0.000091
S	1045	K1045R	aAg	aGg	5	5	B.1.1.70	0.001705
S	1045	K1045K	aaG	aaA	5	5	B.1.258.17	0.00052
S	1045	K1045N	aaG	aaT	5	5	B.1.36.17	0.00247
S	1045	K1045E	Aag	Gag	5	5	B.1.617.2	0.000019
S	1045	K1045N	aaG	aaT	4	4	AY.119	0.000141
S	1045	K1045M	aAg	aTg	4	4	AY.25	0.000024
S	1045	K1045R	aAg	aGg	4	4	AY.43	0.000018
S	1045	K1045E	Aag	Gag	4	4	AY.44	0.000024
S	1045	K1045M	aAg	aTg	4	4	B.1.160	0.000125
S	1045	K1045K	aaG	aaA	4	4	B.1.177.48	0.0125
S	1045	K1045R	aAg	aGg	4	4	B.1.221	0.000284
S	1045	K1045R	aAg	aGg	4	4	B.1.258	0.000266
S	1045	K1045N	aaG	aaT	4	4	B.1.349	0.002859
S	1045	K1045del	AAG	---	4	4	B.1.617.2	0.000015
S	1045	K1045P	AAg	CCg	3	3	All	0.000001
S	1045	K1045R	aAg	aGg	3	3	AY.103	0.000019
S	1045	K1045R	aAg	aGg	3	3	AY.20	0.000117
S	1045	K1045K	aaG	aaA	3	3	AY.25	0.000018
S	1045	K1045R	aAg	aGg	3	3	AY.25	0.000018
S	1045	K1045Q	Aag	Cag	3	3	AY.25	0.000018
S	1045	K1045R	aAg	aGg	3	3	AY.26	0.000085
S	1045	K1045K	aaG	aaA	3	3	AY.26	0.000085
S	1045	K1045N	aaG	aaT	3	3	AY.26	0.000085
S	1045	K1045N	aaG	aaT	3	3	AY.36	0.000445
S	1045	K1045R	aAg	aGg	2	3	AY.39	0.000049
S	1045	K1045R	AAg	CGg	1	3	AY.39	0.000025
S	1045	K1045M	aAg	aTg	3	3	AY.4	0.000005
S	1045	K1045del	AAG	---	3	3	AY.4	0.000005
S	1045	K1045N	aaG	aaT	3	3	AY.4.2	0.000065
S	1045	K1045R	aAg	aGg	3	3	AY.47	0.000093
S	1045	K1045N	aaG	aaT	3	3	AY.47	0.000093
S	1045	K1045K	aaG	aaA	3	3	AY.5	0.000062
S	1045	K1045N	aaG	aaT	3	3	AY.60	0.002814
S	1045	K1045Q	Aag	Cag	3	3	B.1	0.000027
S	1045	K1045M	aAg	aTg	3	3	B.1.1.7	0.000003
S	1045	K1045K	aaG	aaA	3	3	B.1.177	0.00004
S	1045	K1045K	aaG	aaA	3	3	B.1.239	0.003663
S	1045	K1045R	aAg	aGg	3	3	B.1.36.36	0.001806
S	1045	K1045R	aAg	aGg	2	3	B.1.617.2	0.000008
S	1045	K1045R	AAg	CGg	1	3	B.1.617.2	0.000004
S	1045	K1045N	aaG	aaT	3	3	C.37	0.000348
S	1045	K1045N	aaG	aaT	3	3	P.1	0.000047
S	1045	K1045K	aaG	aaA	3	3	P.2	0.00056
S	1045	K1045P	AAg	CCg	2	2		0.111111
S	1045	K1045del1	aaG	aa-	2	2	All	0
S	1045	K1045del2	AAg	--g	2	2	All	0
S	1045	K1045L	AAg	CTg	1	2	All	0
S	1045	K1045L	AAg	TTg	1	2	All	0
S	1045	K1045R	aAg	aGg	2	2	AY.100	0.000092
S	1045	K1045N	aaG	aaT	2	2	AY.111	0.000366
S	1045	K1045K	aaG	aaA	2	2	AY.14	0.000176
S	1045	K1045R	aAg	aGg	2	2	AY.3	0.00002
S	1045	K1045N	aaG	aaT	2	2	AY.33	0.000134
S	1045	K1045del	AAG	---	2	2	AY.43	0.000009
S	1045	K1045N	aaG	aaT	2	2	AY.43	0.000009
S	1045	K1045L	AAg	TTg	1	2	AY.43	0.000004
S	1045	K1045L	AAg	CTg	1	2	AY.43	0.000004
S	1045	K1045T	aAg	aCg	2	2	AY.44	0.000012
S	1045	K1045K	aaG	aaA	2	2	AY.46.4	0.000329
S	1045	K1045N	aaG	aaT	2	2	AY.46.6	0.000144
S	1045	K1045N	aaG	aaT	2	2	AY.61	0.00021
S	1045	K1045N	aaG	aaT	2	2	AY.7.1	0.000225
S	1045	K1045N	aaG	aaT	2	2	AY.75	0.000112
S	1045	K1045N	aaG	aaT	2	2	AY.99.2	0.000184
S	1045	K1045M	aAg	aTg	2	2	B.1	0.000018
S	1045	K1045N	aaG	aaT	2	2	B.1.1	0.000036
S	1045	K1045R	aAg	aGg	2	2	B.1.1.161	0.007067
S	1045	K1045K	aaG	aaA	2	2	B.1.1.265	0.006309
S	1045	K1045K	aaG	aaA	2	2	B.1.1.305	0.007722
S	1045	K1045K	aaG	aaA	2	2	B.1.1.374	0.004751
S	1045	K1045R	aAg	aGg	2	2	B.1.1.39	0.001019
S	1045	K1045Q	Aag	Cag	2	2	B.1.1.7	0.000002
S	1045	K1045E	Aag	Gag	2	2	B.1.160	0.000062
S	1045	K1045N	aaG	aaT	2	2	B.1.160	0.000062
S	1045	K1045R	aAg	aGg	2	2	B.1.160.9	0.014388
S	1045	K1045del	AAG	---	2	2	B.1.177	0.000026
S	1045	K1045M	aAg	aTg	2	2	B.1.177	0.000026
S	1045	K1045E	Aag	Gag	2	2	B.1.177.16	0.001329
S	1045	K1045R	aAg	aGg	2	2	B.1.177.21	0.000153
S	1045	K1045N	aaG	aaT	2	2	B.1.177.62	0.002384
S	1045	K1045E	Aag	Gag	2	2	B.1.2	0.000018
S	1045	K1045R	aAg	aGg	2	2	B.1.2	0.000018
S	1045	K1045N	aaG	aaT	2	2	B.1.240	0.000431
S	1045	K1045N	aaG	aaC	1	2	B.1.258	0.000067
S	1045	K1045N	aaG	aaT	1	2	B.1.258	0.000067
S	1045	K1045K	aaG	aaA	2	2	B.1.429	0.000047
S	1045	K1045N	aaG	aaT	2	2	B.1.588	0.00182
S	1045	K1045K	aaG	aaA	2	2	B.1.588	0.00182
S	1045	K1045N	aaG	aaT	2	2	B.1.617.1	0.000258
S	1045	K1045K	aaG	aaA	2	2	B.1.617.2	0.000008
S	1045	K1045R	aAg	aGg	2	2	C.36.3	0.001134
S	1045	K1045R	aAg	aGg	2	2	P.1	0.000032
S	1045	K1045N	aaG	aaT	1	1		0.055556
S	1045	K1045K	aaG	aaA	1	1	A.2	0.000662
S	1045	K1045R	aAG	aGA	1	1	A.2.5.3	0.010309
S	1045	K1045Q	Aag	Cag	1	1	AH.3	0.003802
S	1045	K1045S	AAg	TCg	1	1	All	0
S	1045	K1045G	AAg	GGg	1	1	All	0
S	1045	K1045N	aaG	aaT	1	1	AT.1	0.005128
S	1045	K1045N	aaG	aaT	1	1	AY.1	0.000396
S	1045	K1045N	aaG	aaT	1	1	AY.100	0.000046
S	1045	K1045K	aaG	aaA	1	1	AY.103	0.000006
S	1045	K1045M	aAg	aTg	1	1	AY.103	0.000006
S	1045	K1045R	aAg	aGg	1	1	AY.107	0.000466
S	1045	K1045K	aaG	aaA	1	1	AY.107	0.000466
S	1045	K1045N	aaG	aaT	1	1	AY.109	0.00074
S	1045	K1045R	aAg	aGg	1	1	AY.113	0.000142
S	1045	K1045E	Aag	Gag	1	1	AY.113	0.000142
S	1045	K1045R	aAg	aGg	1	1	AY.116	0.000287
S	1045	K1045K	aaG	aaA	1	1	AY.118	0.000063
S	1045	K1045N	aaG	aaT	1	1	AY.118	0.000063
S	1045	K1045E	Aag	Gag	1	1	AY.119	0.000035
S	1045	K1045K	aaG	aaA	1	1	AY.120	0.000037
S	1045	K1045del	AAG	---	1	1	AY.120	0.000037
S	1045	K1045R	aAg	aGg	1	1	AY.13	0.000161
S	1045	K1045E	Aag	Gag	1	1	AY.13	0.000161
S	1045	K1045M	aAg	aTg	1	1	AY.14	0.000088
S	1045	K1045N	aaG	aaT	1	1	AY.20	0.000039
S	1045	K1045M	aAg	aTg	1	1	AY.20	0.000039
S	1045	K1045Q	Aag	Cag	1	1	AY.20	0.000039
S	1045	K1045K	aaG	aaA	1	1	AY.23	0.00007
S	1045	K1045E	Aag	Gag	1	1	AY.25	0.000006
S	1045	K1045M	aAg	aTg	1	1	AY.26	0.000028
S	1045	K1045T	aAg	aCg	1	1	AY.29	0.000016
S	1045	K1045N	aaG	aaT	1	1	AY.29.1	0.000221
S	1045	K1045N	aaG	aaT	1	1	AY.3	0.00001
S	1045	K1045N	aaG	aaT	1	1	AY.34.1	0.00051
S	1045	K1045N	aaG	aaT	1	1	AY.35	0.000233
S	1045	K1045K	aaG	aaA	1	1	AY.39	0.000025
S	1045	K1045M	aAg	aTg	1	1	AY.39	0.000025
S	1045	K1045Q	Aag	Cag	1	1	AY.39.2	0.001541
S	1045	K1045T	aAg	aCg	1	1	AY.4	0.000002
S	1045	K1045del1	aaG	aa-	1	1	AY.4	0.000002
S	1045	K1045K	aaG	aaA	1	1	AY.4.2	0.000022
S	1045	K1045del	AAG	---	1	1	AY.4.5	0.000107
S	1045	K1045N	aaG	aaT	1	1	AY.40	0.000964
S	1045	K1045R	aAg	aGg	1	1	AY.41	0.000294
S	1045	K1045M	aAg	aTg	1	1	AY.43	0.000004
S	1045	K1045P	AAg	CCg	1	1	AY.43	0.000004
S	1045	K1045S	AAg	TCg	1	1	AY.43	0.000004
S	1045	K1045M	aAg	aTg	1	1	AY.44	0.000006
S	1045	K1045del1	aaG	aa-	1	1	AY.44	0.000006
S	1045	K1045K	aaG	aaA	1	1	AY.45	0.000122
S	1045	K1045N	aaG	aaT	1	1	AY.45	0.000122
S	1045	K1045N	aaG	aaT	1	1	AY.46	0.000104
S	1045	K1045del	AAG	---	1	1	AY.46.2	0.000635
S	1045	K1045N	aaG	aaT	1	1	AY.46.4	0.000165
S	1045	K1045K	aaG	aaA	1	1	AY.46.6	0.000072
S	1045	K1045E	Aag	Gag	1	1	AY.46.6	0.000072
S	1045	K1045N	aaG	aaT	1	1	AY.52	0.000814
S	1045	K1045E	Aag	Gag	1	1	AY.55	0.000917
S	1045	K1045K	aaG	aaA	1	1	AY.58	0.000907
S	1045	K1045K	aaG	aaA	1	1	AY.6	0.000041
S	1045	K1045N	aaG	aaT	1	1	AY.62	0.000436
S	1045	K1045R	aAg	aGg	1	1	AY.67	0.000464
S	1045	K1045N	aaG	aaT	1	1	AY.69	0.000187
S	1045	K1045K	aaG	aaA	1	1	AY.70	0.000209
S	1045	K1045R	aAg	aGg	1	1	AY.75	0.000056
S	1045	K1045del	AAG	---	1	1	AY.75	0.000056
S	1045	K1045N	aaG	aaT	1	1	AY.75.1	0.00018
S	1045	K1045R	aAg	aGg	1	1	AY.75.1	0.00018
S	1045	K1045N	aaG	aaT	1	1	AY.84	0.000437
S	1045	K1045M	aAg	aTg	1	1	AY.9.2	0.000037
S	1045	K1045N	aaG	aaT	1	1	AY.92	0.000287
S	1045	K1045N	aaG	aaT	1	1	B	0.000128
S	1045	K1045R	aAg	aGg	1	1	B	0.000128
S	1045	K1045E	Aag	Gag	1	1	B.1	0.000009
S	1045	K1045del	AAG	---	1	1	B.1	0.000009
S	1045	K1045T	aAg	aCg	1	1	B.1	0.000009
S	1045	K1045E	Aag	Gag	1	1	B.1.1	0.000018
S	1045	K1045K	aaG	aaA	1	1	B.1.1.141	0.002012
S	1045	K1045M	aAg	aTg	1	1	B.1.1.194	0.00495
S	1045	K1045N	aaG	aaT	1	1	B.1.1.210	0.005714
S	1045	K1045K	aaG	aaA	1	1	B.1.1.220	0.001859
S	1045	K1045del	AAG	---	1	1	B.1.1.236	0.006897
S	1045	K1045R	aAg	aGg	1	1	B.1.1.241	0.00207
S	1045	K1045M	aAg	aTg	1	1	B.1.1.241	0.00207
S	1045	K1045E	Aag	Gag	1	1	B.1.1.25	0.000569
S	1045	K1045N	aaG	aaT	1	1	B.1.1.28	0.000311
S	1045	K1045K	aaG	aaA	1	1	B.1.1.284	0.000107
S	1045	K1045T	aAg	aCg	1	1	B.1.1.33	0.000421
S	1045	K1045N	aaG	aaT	1	1	B.1.1.33	0.000421
S	1045	K1045del	AAG	---	1	1	B.1.1.37	0.000193
S	1045	K1045R	aAg	aGg	1	1	B.1.1.409	0.002833
S	1045	K1045M	aAg	aTg	1	1	B.1.1.409	0.002833
S	1045	K1045N	aaG	aaT	1	1	B.1.1.428	0.009434
S	1045	K1045K	aaG	aaA	1	1	B.1.1.433	0.001425
S	1045	K1045R	aAg	aGg	1	1	B.1.1.433	0.001425
S	1045	K1045N	aaG	aaT	1	1	B.1.1.485	0.016667
S	1045	K1045del2	AAg	--g	1	1	B.1.1.7	0.000001
S	1045	K1045G	AAg	GGg	1	1	B.1.1.7	0.000001
S	1045	K1045E	Aag	Gag	1	1	B.1.1.7	0.000001
S	1045	K1045M	aAg	aTg	1	1	B.1.1.70	0.000341
S	1045	K1045R	aAg	aGg	1	1	B.1.1.8	0.003584
S	1045	K1045N	aaG	aaT	1	1	B.1.128	0.000635
S	1045	K1045T	aAg	aCg	1	1	B.1.134	0.005464
S	1045	K1045K	aaG	aaA	1	1	B.1.157	0.002985
S	1045	K1045R	aAg	aGg	1	1	B.1.160.14	0.002119
S	1045	K1045R	aAg	aGg	1	1	B.1.160.16	0.000929
S	1045	K1045M	aAg	aTg	1	1	B.1.160.16	0.000929
S	1045	K1045R	aAg	aGg	1	1	B.1.160.32	0.004292
S	1045	K1045N	aaG	aaT	1	1	B.1.161	0.017241
S	1045	K1045E	Aag	Gag	1	1	B.1.177	0.000013
S	1045	K1045R	aAg	aGg	1	1	B.1.177.12	0.000152
S	1045	K1045N	aaG	aaT	1	1	B.1.177.15	0.000631
S	1045	K1045K	aaG	aaA	1	1	B.1.177.17	0.000821
S	1045	K1045del	AAG	---	1	1	B.1.177.18	0.00116
S	1045	K1045E	Aag	Gag	1	1	B.1.177.21	0.000076
S	1045	K1045M	aAg	aTg	1	1	B.1.177.23	0.003236
S	1045	K1045R	aAg	aGg	1	1	B.1.177.23	0.003236
S	1045	K1045R	aAg	aGg	1	1	B.1.177.43	0.001477
S	1045	K1045R	aAg	aGg	1	1	B.1.177.44	0.000519
S	1045	K1045del	AAG	---	1	1	B.1.177.5	0.001242
S	1045	K1045Q	Aag	Cag	1	1	B.1.177.7	0.000165
S	1045	K1045N	aaG	aaT	1	1	B.1.177.81	0.000189
S	1045	K1045R	aAg	aGg	1	1	B.1.177.89	0.02439
S	1045	K1045N	aaG	aaT	1	1	B.1.187	0.033333
S	1045	K1045T	aAg	aCg	1	1	B.1.2	0.000009
S	1045	K1045del	AAG	---	1	1	B.1.2	0.000009
S	1045	K1045R	aAg	aGg	1	1	B.1.222	0.001692
S	1045	K1045K	aaG	aaA	1	1	B.1.232	0.000537
S	1045	K1045del2	AAg	--g	1	1	B.1.258	0.000067
S	1045	K1045R	aAg	aGg	1	1	B.1.258.17	0.000104
S	1045	K1045N	aaG	aaT	1	1	B.1.301	0.005917
S	1045	K1045K	aaG	aaA	1	1	B.1.349	0.000715
S	1045	K1045del	AAG	---	1	1	B.1.351	0.00003
S	1045	K1045N	aaG	aaT	1	1	B.1.36	0.000146
S	1045	K1045E	Aag	Gag	1	1	B.1.36	0.000146
S	1045	K1045M	aAg	aTg	1	1	B.1.361	0.001289
S	1045	K1045N	aaG	aaT	1	1	B.1.367	0.000792
S	1045	K1045T	aAg	aCg	1	1	B.1.396	0.000706
S	1045	K1045del	AAG	---	1	1	B.1.415	0.014286
S	1045	K1045M	aAg	aTg	1	1	B.1.427	0.00005
S	1045	K1045E	Aag	Gag	1	1	B.1.429	0.000024
S	1045	K1045K	aaG	aaA	1	1	B.1.438.1	0.000107
S	1045	K1045T	aAg	aCg	1	1	B.1.526	0.000024
S	1045	K1045K	aaG	aaA	1	1	B.1.564	0.000426
S	1045	K1045R	aAg	aGg	1	1	B.1.588	0.00091
S	1045	K1045R	aAg	aGg	1	1	B.1.590	0.004545
S	1045	K1045R	aAg	aGg	1	1	B.1.595	0.000261
S	1045	K1045Q	Aag	Cag	1	1	B.1.617.2	0.000004
S	1045	K1045R	aAg	aGg	1	1	B.1.620	0.000946
S	1045	K1045R	aAg	aGg	1	1	B.1.621	0.000089
S	1045	K1045M	aAg	aTg	1	1	B.1.621	0.000089
S	1045	K1045K	aaG	aaA	1	1	B.1.621	0.000089
S	1045	K1045T	aAg	aCg	1	1	B.1.623	0.000536
S	1045	K1045R	aAg	aGg	1	1	B.1.637	0.000073
S	1045	K1045M	aAg	aTg	1	1	B.6.1	0.026316
S	1045	K1045N	aaG	aaT	1	1	B.6.6	0.000889
S	1045	K1045M	aAg	aTg	1	1	C.35	0.000774
S	1045	K1045K	aaG	aaA	1	1	C.37	0.000116
S	1045	K1045del	AAG	---	1	1	C.37	0.000116
S	1045	K1045K	aaG	aaA	1	1	P.1.15	0.000232
S	1045	K1045K	aaG	aaA	1	1	P.1.17	0.000162
S	1045	K1045K	aaG	aaA	1	1	P.1.17.1	0.000875
S	1045	K1045N	aaG	aaT	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.