CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1027 | T1027I | nonsyn | aCt | aTt | 123272 | 123272 | 1 | 24641-24643 | |
S | 1027 | T1027S | nonsyn | aCt | aGt | 145 | 99 | 0.682759 | 24641-24643 | |
S | 1027 | T1027S | nonsyn | Act | Tct | 145 | 46 | 0.317241 | 24641-24643 | |
S | 1027 | T1027T | syn | acT | acC | 138 | 115 | 0.833333 | 24641-24643 | |
S | 1027 | T1027T | syn | acT | acA | 138 | 22 | 0.15942 | 24641-24643 | |
S | 1027 | T1027T | syn | acT | acG | 138 | 1 | 0.00724638 | 24641-24643 | |
S | 1027 | T1027A | nonsyn | Act | Gct | 77 | 77 | 1 | 24641-24643 | |
S | 1027 | T1027N | nonsyn | aCt | aAt | 48 | 48 | 1 | 24641-24643 | |
S | 1027 | T1027del | del | ACT | --- | 38 | 38 | 1 | 24641-24643 | |
S | 1027 | T1027V | nonsyn | ACt | GTt | 10 | 10 | 1 | 24641-24643 | |
S | 1027 | T1027P | nonsyn | Act | Cct | 3 | 2 | 0.666667 | 24641-24643 | |
S | 1027 | T1027P | nonsyn | AcT | CcA | 3 | 1 | 0.333333 | 24641-24643 | |
S | 1027 | T1027F | nonsyn | ACt | TTt | 1 | 1 | 1 | 24641-24643 | |
S | 1027 | T1027H | nonsyn | ACt | CAt | 1 | 1 | 1 | 24641-24643 | |
S | 1027 | T1027Q | nonsyn | ACT | CAA | 1 | 1 | 1 | 24641-24643 | |
S | 1027 | T1027K | nonsyn | aCT | aAA | 1 | 1 | 1 | 24641-24643 | |
S | 1027 | T1027del1 | del | aCT | a-A | 1 | 1 | 1 | 24641-24643 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1027 | T1027I | aCt | aTt | 123272 | 123272 | All | 0.023577 |
S | 1027 | T1027I | aCt | aTt | 62096 | 62096 | P.1 | 0.978259 |
S | 1027 | T1027I | aCt | aTt | 19884 | 19884 | P.1.14 | 0.950478 |
S | 1027 | T1027I | aCt | aTt | 6101 | 6101 | P.1.17 | 0.986897 |
S | 1027 | T1027I | aCt | aTt | 4258 | 4258 | P.1.15 | 0.989312 |
S | 1027 | T1027I | aCt | aTt | 3598 | 3598 | P.1.10 | 0.96955 |
S | 1027 | T1027I | aCt | aTt | 3113 | 3113 | P.1.7 | 0.993934 |
S | 1027 | T1027I | aCt | aTt | 3056 | 3056 | P.1.1 | 0.970775 |
S | 1027 | T1027I | aCt | aTt | 2802 | 2802 | B.1.628 | 0.987315 |
S | 1027 | T1027I | aCt | aTt | 2620 | 2620 | P.1.16 | 0.980172 |
S | 1027 | T1027I | aCt | aTt | 2012 | 2012 | P.1.12 | 0.973863 |
S | 1027 | T1027I | aCt | aTt | 1559 | 1559 | B.1.619.1 | 1 |
S | 1027 | T1027I | aCt | aTt | 1141 | 1141 | P.1.17.1 | 0.99825 |
S | 1027 | T1027I | aCt | aTt | 1120 | 1120 | B.1.619 | 0.97561 |
S | 1027 | T1027I | aCt | aTt | 1048 | 1048 | P.1.13 | 0.941599 |
S | 1027 | T1027I | aCt | aTt | 1029 | 1029 | B.1.620 | 0.97351 |
S | 1027 | T1027I | aCt | aTt | 1024 | 1024 | P.1.4 | 1 |
S | 1027 | T1027I | aCt | aTt | 861 | 861 | P.1.2 | 0.995376 |
S | 1027 | T1027I | aCt | aTt | 615 | 615 | B.1.1.523 | 0.960938 |
S | 1027 | T1027I | aCt | aTt | 514 | 514 | P.1.6 | 1 |
S | 1027 | T1027I | aCt | aTt | 482 | 482 | B.1.627 | 0.973737 |
S | 1027 | T1027I | aCt | aTt | 479 | 479 | AY.4 | 0.000746 |
S | 1027 | T1027I | aCt | aTt | 293 | 293 | B.1.631 | 0.986532 |
S | 1027 | T1027I | aCt | aTt | 260 | 260 | B.1 | 0.002381 |
S | 1027 | T1027I | aCt | aTt | 209 | 209 | P.1.8 | 1 |
S | 1027 | T1027I | aCt | aTt | 208 | 208 | P.1.9 | 1 |
S | 1027 | T1027I | aCt | aTt | 205 | 205 | AY.68 | 0.056118 |
S | 1027 | T1027I | aCt | aTt | 189 | 189 | AY.103 | 0.001174 |
S | 1027 | T1027I | aCt | aTt | 168 | 168 | B.1.617.2 | 0.000633 |
S | 1027 | T1027S | aCt | aGt | 99 | 145 | All | 0.000019 |
S | 1027 | T1027S | Act | Tct | 46 | 145 | All | 0.000009 |
S | 1027 | T1027T | acT | acC | 115 | 138 | All | 0.000022 |
S | 1027 | T1027T | acT | acA | 22 | 138 | All | 0.000004 |
S | 1027 | T1027T | acT | acG | 1 | 138 | All | 0 |
S | 1027 | T1027I | aCt | aTt | 115 | 115 | B.1.1 | 0.002086 |
S | 1027 | T1027I | aCt | aTt | 112 | 112 | P.1.10.1 | 0.910569 |
S | 1027 | T1027I | aCt | aTt | 108 | 108 | AY.102 | 0.002864 |
S | 1027 | T1027I | aCt | aTt | 108 | 108 | B.1.636 | 0.724832 |
S | 1027 | T1027I | aCt | aTt | 105 | 105 | AY.43 | 0.000465 |
S | 1027 | T1027I | aCt | aTt | 102 | 102 | AY.44 | 0.000621 |
S | 1027 | T1027I | aCt | aTt | 98 | 98 | P.1.11 | 1 |
S | 1027 | T1027I | aCt | aTt | 94 | 94 | AY.3 | 0.000935 |
S | 1027 | T1027I | aCt | aTt | 91 | 91 | B.1.2 | 0.000801 |
S | 1027 | T1027I | aCt | aTt | 86 | 86 | AY.120 | 0.003197 |
S | 1027 | T1027A | Act | Gct | 77 | 77 | All | 0.000015 |
S | 1027 | T1027I | aCt | aTt | 67 | 67 | AY.10 | 0.035506 |
S | 1027 | T1027I | aCt | aTt | 64 | 64 | B.1.243 | 0.004453 |
S | 1027 | T1027I | aCt | aTt | 60 | 60 | AY.25 | 0.000361 |
S | 1027 | T1027I | aCt | aTt | 59 | 59 | B.1.177 | 0.000777 |
S | 1027 | T1027N | aCt | aAt | 48 | 48 | All | 0.000009 |
S | 1027 | T1027I | aCt | aTt | 47 | 47 | B.1.526 | 0.001105 |
S | 1027 | T1027I | aCt | aTt | 43 | 43 | AY.39 | 0.001063 |
S | 1027 | T1027del | ACT | --- | 38 | 38 | All | 0.000007 |
S | 1027 | T1027I | aCt | aTt | 29 | 29 | B.1.1.7 | 0.000026 |
S | 1027 | T1027I | aCt | aTt | 29 | 29 | P.1.3 | 1 |
S | 1027 | T1027S | aCt | aGt | 28 | 28 | B.1.617.2 | 0.000105 |
S | 1027 | T1027I | aCt | aTt | 26 | 26 | B.1.1.519 | 0.001032 |
S | 1027 | T1027T | acT | acC | 24 | 26 | B.1.617.2 | 0.00009 |
S | 1027 | T1027T | acT | acA | 2 | 26 | B.1.617.2 | 0.000008 |
S | 1027 | T1027I | aCt | aTt | 24 | 24 | B.1.160 | 0.000749 |
S | 1027 | T1027I | aCt | aTt | 24 | 24 | P.1.10.2 | 1 |
S | 1027 | T1027I | aCt | aTt | 23 | 23 | AY.26 | 0.000651 |
S | 1027 | T1027I | aCt | aTt | 22 | 22 | B.1.1.317 | 0.009057 |
S | 1027 | T1027I | aCt | aTt | 22 | 22 | C.37 | 0.002553 |
S | 1027 | T1027I | aCt | aTt | 20 | 20 | AY.46.6 | 0.001444 |
S | 1027 | T1027A | Act | Gct | 20 | 20 | B.1.1.7 | 0.000018 |
S | 1027 | T1027S | Act | Tct | 19 | 19 | AY.102 | 0.000504 |
S | 1027 | T1027S | aCt | aGt | 17 | 17 | AY.121 | 0.0023 |
S | 1027 | T1027I | aCt | aTt | 17 | 17 | AY.39.1 | 0.000673 |
S | 1027 | T1027I | aCt | aTt | 17 | 17 | AY.67 | 0.007892 |
S | 1027 | T1027I | aCt | aTt | 17 | 17 | B.1.221 | 0.001208 |
S | 1027 | T1027A | Act | Gct | 15 | 15 | AY.103 | 0.000093 |
S | 1027 | T1027I | aCt | aTt | 15 | 15 | AY.117 | 0.001268 |
S | 1027 | T1027I | aCt | aTt | 15 | 15 | B.1.1.28 | 0.004669 |
S | 1027 | T1027I | aCt | aTt | 15 | 15 | B.1.258 | 0.000998 |
S | 1027 | T1027I | aCt | aTt | 15 | 15 | B.1.36 | 0.002189 |
S | 1027 | T1027I | aCt | aTt | 14 | 14 | AY.29 | 0.000221 |
S | 1027 | T1027I | aCt | aTt | 14 | 14 | AY.47 | 0.000435 |
S | 1027 | T1027I | aCt | aTt | 14 | 14 | AY.6 | 0.000576 |
S | 1027 | T1027I | aCt | aTt | 14 | 14 | AY.91 | 0.010226 |
S | 1027 | T1027I | aCt | aTt | 14 | 14 | B.1.160.16 | 0.013011 |
S | 1027 | T1027I | aCt | aTt | 14 | 14 | B.1.351 | 0.000416 |
S | 1027 | T1027I | aCt | aTt | 13 | 13 | P.1.5 | 1 |
S | 1027 | T1027S | aCt | aGt | 12 | 12 | B.1.1.461 | 0.144578 |
S | 1027 | T1027T | acT | acC | 10 | 12 | B.1.1.7 | 0.000009 |
S | 1027 | T1027T | acT | acA | 2 | 12 | B.1.1.7 | 0.000002 |
S | 1027 | T1027I | aCt | aTt | 11 | 11 | A.2.5 | 0.005489 |
S | 1027 | T1027I | aCt | aTt | 11 | 11 | AY.100 | 0.000506 |
S | 1027 | T1027I | aCt | aTt | 11 | 11 | AY.20 | 0.000428 |
S | 1027 | T1027T | acT | acC | 9 | 11 | AY.4 | 0.000014 |
S | 1027 | T1027T | acT | acA | 2 | 11 | AY.4 | 0.000003 |
S | 1027 | T1027N | aCt | aAt | 11 | 11 | AY.44 | 0.000067 |
S | 1027 | T1027I | aCt | aTt | 11 | 11 | AY.5 | 0.000227 |
S | 1027 | T1027I | aCt | aTt | 11 | 11 | B | 0.001406 |
S | 1027 | T1027del | ACT | --- | 11 | 11 | B.1.1.7 | 0.00001 |
S | 1027 | T1027I | aCt | aTt | 11 | 11 | B.1.429 | 0.000259 |
S | 1027 | T1027V | ACt | GTt | 10 | 10 | All | 0.000002 |
S | 1027 | T1027I | aCt | aTt | 10 | 10 | AY.119 | 0.000353 |
S | 1027 | T1027S | aCt | aGt | 9 | 10 | AY.4 | 0.000014 |
S | 1027 | T1027S | Act | Tct | 1 | 10 | AY.4 | 0.000002 |
S | 1027 | T1027I | aCt | aTt | 10 | 10 | AY.46 | 0.001041 |
S | 1027 | T1027I | aCt | aTt | 10 | 10 | AY.99.2 | 0.000922 |
S | 1027 | T1027I | aCt | aTt | 10 | 10 | B.1.517 | 0.00427 |
S | 1027 | T1027I | aCt | aTt | 10 | 10 | B.1.621 | 0.000885 |
S | 1027 | T1027S | aCt | aGt | 10 | 10 | B.23 | 0.02924 |
S | 1027 | T1027I | aCt | aTt | 9 | 9 | AY.34 | 0.000873 |
S | 1027 | T1027A | Act | Gct | 9 | 9 | AY.4 | 0.000014 |
S | 1027 | T1027I | aCt | aTt | 9 | 9 | B.1.177.10 | 0.007902 |
S | 1027 | T1027T | acT | acC | 7 | 8 | AY.103 | 0.000043 |
S | 1027 | T1027T | acT | acA | 1 | 8 | AY.103 | 0.000006 |
S | 1027 | T1027I | aCt | aTt | 8 | 8 | AY.45 | 0.000973 |
S | 1027 | T1027I | aCt | aTt | 8 | 8 | B.1.1.385 | 0.035714 |
S | 1027 | T1027I | aCt | aTt | 8 | 8 | B.1.258.17 | 0.000832 |
S | 1027 | T1027I | aCt | aTt | 8 | 8 | C.37.1 | 0.020942 |
S | 1027 | T1027V | ACt | GTt | 8 | 8 | P.1 | 0.000126 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | AY.4.2 | 0.000152 |
S | 1027 | T1027S | Act | Tct | 7 | 7 | AY.46.4 | 0.001152 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | AY.64 | 0.004167 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | AY.69 | 0.001307 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | B.1.1.284 | 0.000752 |
S | 1027 | T1027S | aCt | aGt | 7 | 7 | B.1.1.291 | 0.005197 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | B.1.131 | 0.061404 |
S | 1027 | T1027T | acT | acC | 7 | 7 | B.1.177.21 | 0.000535 |
S | 1027 | T1027S | Act | Tct | 7 | 7 | B.1.177.73 | 0.003964 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | B.1.427 | 0.000353 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | B.1.499 | 0.007353 |
S | 1027 | T1027I | aCt | aTt | 7 | 7 | D.2 | 0.000525 |
S | 1027 | T1027T | acT | acC | 6 | 6 | AY.102 | 0.000159 |
S | 1027 | T1027I | aCt | aTt | 6 | 6 | AY.121 | 0.000812 |
S | 1027 | T1027T | acT | acC | 5 | 6 | AY.43 | 0.000022 |
S | 1027 | T1027T | acT | acA | 1 | 6 | AY.43 | 0.000004 |
S | 1027 | T1027I | aCt | aTt | 6 | 6 | AY.9.2 | 0.00022 |
S | 1027 | T1027I | aCt | aTt | 6 | 6 | B.1.177.8 | 0.004515 |
S | 1027 | T1027I | aCt | aTt | 6 | 6 | B.1.466.2 | 0.002347 |
S | 1027 | T1027I | aCt | aTt | 6 | 6 | P.2 | 0.00112 |
S | 1027 | T1027T | acT | acA | 3 | 5 | AY.25 | 0.000018 |
S | 1027 | T1027T | acT | acC | 2 | 5 | AY.25 | 0.000012 |
S | 1027 | T1027I | aCt | aTt | 5 | 5 | AY.39.2 | 0.007704 |
S | 1027 | T1027N | aCt | aAt | 5 | 5 | AY.4 | 0.000008 |
S | 1027 | T1027del | ACT | --- | 5 | 5 | AY.4 | 0.000008 |
S | 1027 | T1027S | Act | Tct | 3 | 5 | AY.44 | 0.000018 |
S | 1027 | T1027S | aCt | aGt | 2 | 5 | AY.44 | 0.000012 |
S | 1027 | T1027I | aCt | aTt | 5 | 5 | AY.62 | 0.002179 |
S | 1027 | T1027I | aCt | aTt | 5 | 5 | AY.75 | 0.00028 |
S | 1027 | T1027I | aCt | aTt | 5 | 5 | AY.75.1 | 0.000902 |
S | 1027 | T1027S | aCt | aGt | 4 | 5 | B.1.1.7 | 0.000004 |
S | 1027 | T1027S | Act | Tct | 1 | 5 | B.1.1.7 | 0.000001 |
S | 1027 | T1027I | aCt | aTt | 5 | 5 | B.1.126 | 0.006378 |
S | 1027 | T1027N | aCt | aAt | 5 | 5 | B.1.2 | 0.000044 |
S | 1027 | T1027I | aCt | aTt | 5 | 5 | B.1.525 | 0.000566 |
S | 1027 | T1027N | aCt | aAt | 5 | 5 | B.1.617.2 | 0.000019 |
S | 1027 | T1027I | aCt | aTt | 5 | 5 | C.8 | 0.022321 |
S | 1027 | T1027T | acT | acC | 4 | 4 | AY.107 | 0.001864 |
S | 1027 | T1027I | aCt | aTt | 4 | 4 | AY.14 | 0.000352 |
S | 1027 | T1027I | aCt | aTt | 4 | 4 | AY.23 | 0.000279 |
S | 1027 | T1027T | acT | acC | 4 | 4 | AY.59 | 0.002119 |
S | 1027 | T1027T | acT | acA | 2 | 4 | B.1 | 0.000018 |
S | 1027 | T1027T | acT | acC | 2 | 4 | B.1 | 0.000018 |
S | 1027 | T1027N | aCt | aAt | 4 | 4 | B.1.1.370 | 0.050633 |
S | 1027 | T1027T | acT | acA | 3 | 4 | B.1.177 | 0.00004 |
S | 1027 | T1027T | acT | acC | 1 | 4 | B.1.177 | 0.000013 |
S | 1027 | T1027I | aCt | aTt | 4 | 4 | B.1.177.2 | 0.018182 |
S | 1027 | T1027I | aCt | aTt | 4 | 4 | B.1.565 | 0.003241 |
S | 1027 | T1027A | Act | Gct | 4 | 4 | B.1.617.2 | 0.000015 |
S | 1027 | T1027P | Act | Cct | 2 | 3 | All | 0 |
S | 1027 | T1027P | AcT | CcA | 1 | 3 | All | 0 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.101 | 0.001471 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.116 | 0.00086 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.13 | 0.000483 |
S | 1027 | T1027T | acT | acC | 3 | 3 | AY.14 | 0.000264 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.3.1 | 0.000256 |
S | 1027 | T1027T | acT | acC | 3 | 3 | AY.33 | 0.0002 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.34.1 | 0.00153 |
S | 1027 | T1027T | acT | acC | 3 | 3 | AY.44 | 0.000018 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.5.3 | 0.001012 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.7.1 | 0.000338 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | AY.9.1 | 0.000251 |
S | 1027 | T1027T | acT | acC | 3 | 3 | B.1.1.28 | 0.000934 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.1.302 | 0.006224 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.1.306 | 0.001315 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.1.311 | 0.001074 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.1.349 | 0.030928 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.1.372 | 0.002066 |
S | 1027 | T1027T | acT | acC | 2 | 3 | B.1.1.39 | 0.001019 |
S | 1027 | T1027T | acT | acA | 1 | 3 | B.1.1.39 | 0.00051 |
S | 1027 | T1027S | aCt | aGt | 3 | 3 | B.1.1.429 | 0.013825 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.1.70 | 0.001023 |
S | 1027 | T1027del | ACT | --- | 3 | 3 | B.1.177 | 0.00004 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.177.19 | 0.004292 |
S | 1027 | T1027A | Act | Gct | 3 | 3 | B.1.2 | 0.000026 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.239 | 0.003663 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.349 | 0.002144 |
S | 1027 | T1027I | aCt | aTt | 3 | 3 | B.1.596 | 0.000261 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AD.2 | 0.000438 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AE.8 | 0.000978 |
S | 1027 | T1027A | Act | Gct | 2 | 2 | AY.102 | 0.000053 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.105 | 0.001286 |
S | 1027 | T1027A | Act | Gct | 2 | 2 | AY.106 | 0.00067 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.107 | 0.000932 |
S | 1027 | T1027T | acT | acC | 2 | 2 | AY.110 | 0.000225 |
S | 1027 | T1027T | acT | acC | 2 | 2 | AY.117 | 0.000169 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.118 | 0.000125 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.120.2 | 0.002571 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.16 | 0.000759 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.16.1 | 0.00094 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.19 | 0.002281 |
S | 1027 | T1027S | aCt | aGt | 2 | 2 | AY.25 | 0.000012 |
S | 1027 | T1027T | acT | acC | 2 | 2 | AY.3 | 0.00002 |
S | 1027 | T1027S | Act | Tct | 2 | 2 | AY.3 | 0.00002 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.33 | 0.000134 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.35 | 0.000466 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.40 | 0.001929 |
S | 1027 | T1027N | aCt | aAt | 2 | 2 | AY.42 | 0.00008 |
S | 1027 | T1027A | Act | Gct | 2 | 2 | AY.44 | 0.000012 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.46.2 | 0.001271 |
S | 1027 | T1027S | Act | Tct | 2 | 2 | AY.5 | 0.000041 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.5.4 | 0.000553 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.61 | 0.00021 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.66 | 0.002139 |
S | 1027 | T1027T | acT | acC | 2 | 2 | AY.74 | 0.000231 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.9 | 0.000135 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.93 | 0.000546 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | AY.98 | 0.000158 |
S | 1027 | T1027A | Act | Gct | 2 | 2 | B.1 | 0.000018 |
S | 1027 | T1027del | ACT | --- | 2 | 2 | B.1 | 0.000018 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.117 | 0.019417 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.161 | 0.007067 |
S | 1027 | T1027T | acT | acC | 2 | 2 | B.1.1.170 | 0.002494 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.222 | 0.000408 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.265 | 0.006309 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.279 | 0.002242 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.39 | 0.001019 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.409 | 0.005666 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.50 | 0.001358 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.1.528 | 0.009615 |
S | 1027 | T1027N | aCt | aAt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.177.54 | 0.001213 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.177.81 | 0.000379 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.177.86 | 0.000367 |
S | 1027 | T1027T | acT | acA | 2 | 2 | B.1.2 | 0.000018 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.301 | 0.011834 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.324 | 0.00321 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.336 | 0.004878 |
S | 1027 | T1027T | acT | acC | 2 | 2 | B.1.349 | 0.00143 |
S | 1027 | T1027N | aCt | aAt | 2 | 2 | B.1.351 | 0.000059 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.351.2 | 0.000605 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.351.3 | 0.001753 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.36.10 | 0.009569 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.36.18 | 0.00084 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.391 | 0.002255 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.456 | 0.006536 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.474 | 0.003802 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.503 | 0.004975 |
S | 1027 | T1027P | Act | Cct | 1 | 2 | B.1.617.2 | 0.000004 |
S | 1027 | T1027P | AcT | CcA | 1 | 2 | B.1.617.2 | 0.000004 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.623 | 0.001073 |
S | 1027 | T1027A | Act | Gct | 2 | 2 | B.1.632 | 0.013423 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | B.1.637 | 0.000146 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | C.35 | 0.001548 |
S | 1027 | T1027V | ACt | GTt | 2 | 2 | P.1.14 | 0.000096 |
S | 1027 | T1027T | acT | acC | 2 | 2 | Q.7 | 0.002222 |
S | 1027 | T1027I | aCt | aTt | 2 | 2 | Q.8 | 0.00033 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | A | 0.000387 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | A.2.5.1 | 0.004808 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | AD.2 | 0.000219 |
S | 1027 | T1027del1 | aCT | a-A | 1 | 1 | All | 0 |
S | 1027 | T1027H | ACt | CAt | 1 | 1 | All | 0 |
S | 1027 | T1027Q | ACT | CAA | 1 | 1 | All | 0 |
S | 1027 | T1027K | aCT | aAA | 1 | 1 | All | 0 |
S | 1027 | T1027F | ACt | TTt | 1 | 1 | All | 0 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AU.3 | 0.00211 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | AY.103 | 0.000006 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.113 | 0.000142 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.116.1 | 0.000311 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.120.1 | 0.000321 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.121 | 0.000135 |
S | 1027 | T1027T | acT | acC | 1 | 1 | AY.16.1 | 0.00047 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.2 | 0.000356 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
S | 1027 | T1027T | acT | acC | 1 | 1 | AY.26 | 0.000028 |
S | 1027 | T1027S | aCt | aGt | 1 | 1 | AY.3.1 | 0.000085 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.35 | 0.000233 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.36 | 0.000148 |
S | 1027 | T1027T | acT | acC | 1 | 1 | AY.39 | 0.000025 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.39 | 0.000025 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.4.1 | 0.000737 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.4.2 | 0.000022 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | AY.4.5 | 0.000107 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.42 | 0.00004 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
S | 1027 | T1027S | aCt | aGt | 1 | 1 | AY.43 | 0.000004 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.46.6 | 0.000072 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.53 | 0.000288 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.54 | 0.000095 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.59 | 0.00053 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.63 | 0.000387 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.74 | 0.000116 |
S | 1027 | T1027S | Act | Tct | 1 | 1 | AY.75 | 0.000056 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | AY.8 | 0.000606 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.80 | 0.001129 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | AY.81 | 0.001992 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | AY.9.1 | 0.000084 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | AY.9.1 | 0.000084 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | AY.9.2 | 0.000037 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.95 | 0.000761 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.96 | 0.002075 |
S | 1027 | T1027T | acT | acA | 1 | 1 | AY.98.1 | 0.000048 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.99 | 0.001049 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | AY.99.1 | 0.001553 |
S | 1027 | T1027S | aCt | aGt | 1 | 1 | B.1 | 0.000009 |
S | 1027 | T1027del1 | aCT | a-A | 1 | 1 | B.1 | 0.000009 |
S | 1027 | T1027T | acT | acC | 1 | 1 | B.1.1 | 0.000018 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | B.1.1 | 0.000018 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.157 | 0.000913 |
S | 1027 | T1027P | Act | Cct | 1 | 1 | B.1.1.192 | 0.002309 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.207 | 0.001182 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.236 | 0.006897 |
S | 1027 | T1027T | acT | acA | 1 | 1 | B.1.1.25 | 0.000569 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.253 | 0.002506 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.280 | 0.003086 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.303 | 0.002762 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.322 | 0.008772 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | B.1.1.335 | 0.012987 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.389 | 0.006061 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.391 | 0.008547 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.416 | 0.000905 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | B.1.1.47 | 0.005348 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.1.48 | 0.002874 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1027 | T1027T | acT | acC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1027 | T1027S | Act | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.105 | 0.009615 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.146 | 0.004237 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | B.1.160 | 0.000031 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | B.1.177 | 0.000013 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.42 | 0.000894 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.55 | 0.002331 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.83 | 0.001481 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.177.85 | 0.005435 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.179 | 0.003759 |
S | 1027 | T1027S | aCt | aGt | 1 | 1 | B.1.2 | 0.000009 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.214 | 0.003663 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.22 | 0.001318 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | B.1.221.4 | 0.004167 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.234 | 0.000132 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.236 | 0.002053 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.237 | 0.004975 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.241 | 0.000812 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.247 | 0.014925 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | B.1.258 | 0.000067 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.258.7 | 0.001912 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.311 | 0.000275 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.356 | 0.001727 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.362 | 0.001541 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.396 | 0.000706 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.396 | 0.000706 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | B.1.398 | 0.002976 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.399 | 0.001934 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.400 | 0.000429 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.415 | 0.014286 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.415 | 0.014286 |
S | 1027 | T1027T | acT | acC | 1 | 1 | B.1.427 | 0.00005 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.485 | 0.014925 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.487 | 0.019608 |
S | 1027 | T1027T | acT | acA | 1 | 1 | B.1.509 | 0.000866 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | B.1.526 | 0.000024 |
S | 1027 | T1027N | aCt | aAt | 1 | 1 | B.1.561 | 0.000397 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.576 | 0.000907 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
S | 1027 | T1027T | acT | acG | 1 | 1 | B.1.588 | 0.00091 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 1027 | T1027K | aCT | aAA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1027 | T1027Q | ACT | CAA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1027 | T1027H | ACt | CAt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.621.1 | 0.000506 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.625 | 0.002353 |
S | 1027 | T1027S | Act | Tct | 1 | 1 | B.1.637 | 0.000073 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.639 | 0.021739 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.9.4 | 0.006135 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.1.9.5 | 0.005682 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | B.55 | 0.00295 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | C.37 | 0.000116 |
S | 1027 | T1027S | Act | Tct | 1 | 1 | C.37 | 0.000116 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | C.6 | 0.037037 |
S | 1027 | T1027S | aCt | aGt | 1 | 1 | D.2 | 0.000075 |
S | 1027 | T1027A | Act | Gct | 1 | 1 | D.2 | 0.000075 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | N.6 | 0.007092 |
S | 1027 | T1027F | ACt | TTt | 1 | 1 | P.1 | 0.000016 |
S | 1027 | T1027del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
S | 1027 | T1027I | aCt | aTt | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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