CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1027

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	1027	T1027I		nonsyn	aCt	aTt	123272	123272	1	24641-24643
S	1027	T1027S		nonsyn	aCt	aGt	145	99	0.682759	24641-24643
S	1027	T1027S		nonsyn	Act	Tct	145	46	0.317241	24641-24643
S	1027	T1027T		syn	acT	acC	138	115	0.833333	24641-24643
S	1027	T1027T		syn	acT	acA	138	22	0.15942	24641-24643
S	1027	T1027T		syn	acT	acG	138	1	0.00724638	24641-24643
S	1027	T1027A		nonsyn	Act	Gct	77	77	1	24641-24643
S	1027	T1027N		nonsyn	aCt	aAt	48	48	1	24641-24643
S	1027	T1027del		del	ACT	---	38	38	1	24641-24643
S	1027	T1027V		nonsyn	ACt	GTt	10	10	1	24641-24643
S	1027	T1027P		nonsyn	Act	Cct	3	2	0.666667	24641-24643
S	1027	T1027P		nonsyn	AcT	CcA	3	1	0.333333	24641-24643
S	1027	T1027F		nonsyn	ACt	TTt	1	1	1	24641-24643
S	1027	T1027H		nonsyn	ACt	CAt	1	1	1	24641-24643
S	1027	T1027Q		nonsyn	ACT	CAA	1	1	1	24641-24643
S	1027	T1027K		nonsyn	aCT	aAA	1	1	1	24641-24643
S	1027	T1027del1		del	aCT	a-A	1	1	1	24641-24643

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	1027	T1027I	aCt	aTt	123272	123272	All	0.023577
S	1027	T1027I	aCt	aTt	62096	62096	P.1	0.978259
S	1027	T1027I	aCt	aTt	19884	19884	P.1.14	0.950478
S	1027	T1027I	aCt	aTt	6101	6101	P.1.17	0.986897
S	1027	T1027I	aCt	aTt	4258	4258	P.1.15	0.989312
S	1027	T1027I	aCt	aTt	3598	3598	P.1.10	0.96955
S	1027	T1027I	aCt	aTt	3113	3113	P.1.7	0.993934
S	1027	T1027I	aCt	aTt	3056	3056	P.1.1	0.970775
S	1027	T1027I	aCt	aTt	2802	2802	B.1.628	0.987315
S	1027	T1027I	aCt	aTt	2620	2620	P.1.16	0.980172
S	1027	T1027I	aCt	aTt	2012	2012	P.1.12	0.973863
S	1027	T1027I	aCt	aTt	1559	1559	B.1.619.1	1
S	1027	T1027I	aCt	aTt	1141	1141	P.1.17.1	0.99825
S	1027	T1027I	aCt	aTt	1120	1120	B.1.619	0.97561
S	1027	T1027I	aCt	aTt	1048	1048	P.1.13	0.941599
S	1027	T1027I	aCt	aTt	1029	1029	B.1.620	0.97351
S	1027	T1027I	aCt	aTt	1024	1024	P.1.4	1
S	1027	T1027I	aCt	aTt	861	861	P.1.2	0.995376
S	1027	T1027I	aCt	aTt	615	615	B.1.1.523	0.960938
S	1027	T1027I	aCt	aTt	514	514	P.1.6	1
S	1027	T1027I	aCt	aTt	482	482	B.1.627	0.973737
S	1027	T1027I	aCt	aTt	479	479	AY.4	0.000746
S	1027	T1027I	aCt	aTt	293	293	B.1.631	0.986532
S	1027	T1027I	aCt	aTt	260	260	B.1	0.002381
S	1027	T1027I	aCt	aTt	209	209	P.1.8	1
S	1027	T1027I	aCt	aTt	208	208	P.1.9	1
S	1027	T1027I	aCt	aTt	205	205	AY.68	0.056118
S	1027	T1027I	aCt	aTt	189	189	AY.103	0.001174
S	1027	T1027I	aCt	aTt	168	168	B.1.617.2	0.000633
S	1027	T1027S	aCt	aGt	99	145	All	0.000019
S	1027	T1027S	Act	Tct	46	145	All	0.000009
S	1027	T1027T	acT	acC	115	138	All	0.000022
S	1027	T1027T	acT	acA	22	138	All	0.000004
S	1027	T1027T	acT	acG	1	138	All	0
S	1027	T1027I	aCt	aTt	115	115	B.1.1	0.002086
S	1027	T1027I	aCt	aTt	112	112	P.1.10.1	0.910569
S	1027	T1027I	aCt	aTt	108	108	AY.102	0.002864
S	1027	T1027I	aCt	aTt	108	108	B.1.636	0.724832
S	1027	T1027I	aCt	aTt	105	105	AY.43	0.000465
S	1027	T1027I	aCt	aTt	102	102	AY.44	0.000621
S	1027	T1027I	aCt	aTt	98	98	P.1.11	1
S	1027	T1027I	aCt	aTt	94	94	AY.3	0.000935
S	1027	T1027I	aCt	aTt	91	91	B.1.2	0.000801
S	1027	T1027I	aCt	aTt	86	86	AY.120	0.003197
S	1027	T1027A	Act	Gct	77	77	All	0.000015
S	1027	T1027I	aCt	aTt	67	67	AY.10	0.035506
S	1027	T1027I	aCt	aTt	64	64	B.1.243	0.004453
S	1027	T1027I	aCt	aTt	60	60	AY.25	0.000361
S	1027	T1027I	aCt	aTt	59	59	B.1.177	0.000777
S	1027	T1027N	aCt	aAt	48	48	All	0.000009
S	1027	T1027I	aCt	aTt	47	47	B.1.526	0.001105
S	1027	T1027I	aCt	aTt	43	43	AY.39	0.001063
S	1027	T1027del	ACT	---	38	38	All	0.000007
S	1027	T1027I	aCt	aTt	29	29	B.1.1.7	0.000026
S	1027	T1027I	aCt	aTt	29	29	P.1.3	1
S	1027	T1027S	aCt	aGt	28	28	B.1.617.2	0.000105
S	1027	T1027I	aCt	aTt	26	26	B.1.1.519	0.001032
S	1027	T1027T	acT	acC	24	26	B.1.617.2	0.00009
S	1027	T1027T	acT	acA	2	26	B.1.617.2	0.000008
S	1027	T1027I	aCt	aTt	24	24	B.1.160	0.000749
S	1027	T1027I	aCt	aTt	24	24	P.1.10.2	1
S	1027	T1027I	aCt	aTt	23	23	AY.26	0.000651
S	1027	T1027I	aCt	aTt	22	22	B.1.1.317	0.009057
S	1027	T1027I	aCt	aTt	22	22	C.37	0.002553
S	1027	T1027I	aCt	aTt	20	20	AY.46.6	0.001444
S	1027	T1027A	Act	Gct	20	20	B.1.1.7	0.000018
S	1027	T1027S	Act	Tct	19	19	AY.102	0.000504
S	1027	T1027S	aCt	aGt	17	17	AY.121	0.0023
S	1027	T1027I	aCt	aTt	17	17	AY.39.1	0.000673
S	1027	T1027I	aCt	aTt	17	17	AY.67	0.007892
S	1027	T1027I	aCt	aTt	17	17	B.1.221	0.001208
S	1027	T1027A	Act	Gct	15	15	AY.103	0.000093
S	1027	T1027I	aCt	aTt	15	15	AY.117	0.001268
S	1027	T1027I	aCt	aTt	15	15	B.1.1.28	0.004669
S	1027	T1027I	aCt	aTt	15	15	B.1.258	0.000998
S	1027	T1027I	aCt	aTt	15	15	B.1.36	0.002189
S	1027	T1027I	aCt	aTt	14	14	AY.29	0.000221
S	1027	T1027I	aCt	aTt	14	14	AY.47	0.000435
S	1027	T1027I	aCt	aTt	14	14	AY.6	0.000576
S	1027	T1027I	aCt	aTt	14	14	AY.91	0.010226
S	1027	T1027I	aCt	aTt	14	14	B.1.160.16	0.013011
S	1027	T1027I	aCt	aTt	14	14	B.1.351	0.000416
S	1027	T1027I	aCt	aTt	13	13	P.1.5	1
S	1027	T1027S	aCt	aGt	12	12	B.1.1.461	0.144578
S	1027	T1027T	acT	acC	10	12	B.1.1.7	0.000009
S	1027	T1027T	acT	acA	2	12	B.1.1.7	0.000002
S	1027	T1027I	aCt	aTt	11	11	A.2.5	0.005489
S	1027	T1027I	aCt	aTt	11	11	AY.100	0.000506
S	1027	T1027I	aCt	aTt	11	11	AY.20	0.000428
S	1027	T1027T	acT	acC	9	11	AY.4	0.000014
S	1027	T1027T	acT	acA	2	11	AY.4	0.000003
S	1027	T1027N	aCt	aAt	11	11	AY.44	0.000067
S	1027	T1027I	aCt	aTt	11	11	AY.5	0.000227
S	1027	T1027I	aCt	aTt	11	11	B	0.001406
S	1027	T1027del	ACT	---	11	11	B.1.1.7	0.00001
S	1027	T1027I	aCt	aTt	11	11	B.1.429	0.000259
S	1027	T1027V	ACt	GTt	10	10	All	0.000002
S	1027	T1027I	aCt	aTt	10	10	AY.119	0.000353
S	1027	T1027S	aCt	aGt	9	10	AY.4	0.000014
S	1027	T1027S	Act	Tct	1	10	AY.4	0.000002
S	1027	T1027I	aCt	aTt	10	10	AY.46	0.001041
S	1027	T1027I	aCt	aTt	10	10	AY.99.2	0.000922
S	1027	T1027I	aCt	aTt	10	10	B.1.517	0.00427
S	1027	T1027I	aCt	aTt	10	10	B.1.621	0.000885
S	1027	T1027S	aCt	aGt	10	10	B.23	0.02924
S	1027	T1027I	aCt	aTt	9	9	AY.34	0.000873
S	1027	T1027A	Act	Gct	9	9	AY.4	0.000014
S	1027	T1027I	aCt	aTt	9	9	B.1.177.10	0.007902
S	1027	T1027T	acT	acC	7	8	AY.103	0.000043
S	1027	T1027T	acT	acA	1	8	AY.103	0.000006
S	1027	T1027I	aCt	aTt	8	8	AY.45	0.000973
S	1027	T1027I	aCt	aTt	8	8	B.1.1.385	0.035714
S	1027	T1027I	aCt	aTt	8	8	B.1.258.17	0.000832
S	1027	T1027I	aCt	aTt	8	8	C.37.1	0.020942
S	1027	T1027V	ACt	GTt	8	8	P.1	0.000126
S	1027	T1027I	aCt	aTt	7	7	AY.4.2	0.000152
S	1027	T1027S	Act	Tct	7	7	AY.46.4	0.001152
S	1027	T1027I	aCt	aTt	7	7	AY.64	0.004167
S	1027	T1027I	aCt	aTt	7	7	AY.69	0.001307
S	1027	T1027I	aCt	aTt	7	7	B.1.1.284	0.000752
S	1027	T1027S	aCt	aGt	7	7	B.1.1.291	0.005197
S	1027	T1027I	aCt	aTt	7	7	B.1.131	0.061404
S	1027	T1027T	acT	acC	7	7	B.1.177.21	0.000535
S	1027	T1027S	Act	Tct	7	7	B.1.177.73	0.003964
S	1027	T1027I	aCt	aTt	7	7	B.1.427	0.000353
S	1027	T1027I	aCt	aTt	7	7	B.1.499	0.007353
S	1027	T1027I	aCt	aTt	7	7	D.2	0.000525
S	1027	T1027T	acT	acC	6	6	AY.102	0.000159
S	1027	T1027I	aCt	aTt	6	6	AY.121	0.000812
S	1027	T1027T	acT	acC	5	6	AY.43	0.000022
S	1027	T1027T	acT	acA	1	6	AY.43	0.000004
S	1027	T1027I	aCt	aTt	6	6	AY.9.2	0.00022
S	1027	T1027I	aCt	aTt	6	6	B.1.177.8	0.004515
S	1027	T1027I	aCt	aTt	6	6	B.1.466.2	0.002347
S	1027	T1027I	aCt	aTt	6	6	P.2	0.00112
S	1027	T1027T	acT	acA	3	5	AY.25	0.000018
S	1027	T1027T	acT	acC	2	5	AY.25	0.000012
S	1027	T1027I	aCt	aTt	5	5	AY.39.2	0.007704
S	1027	T1027N	aCt	aAt	5	5	AY.4	0.000008
S	1027	T1027del	ACT	---	5	5	AY.4	0.000008
S	1027	T1027S	Act	Tct	3	5	AY.44	0.000018
S	1027	T1027S	aCt	aGt	2	5	AY.44	0.000012
S	1027	T1027I	aCt	aTt	5	5	AY.62	0.002179
S	1027	T1027I	aCt	aTt	5	5	AY.75	0.00028
S	1027	T1027I	aCt	aTt	5	5	AY.75.1	0.000902
S	1027	T1027S	aCt	aGt	4	5	B.1.1.7	0.000004
S	1027	T1027S	Act	Tct	1	5	B.1.1.7	0.000001
S	1027	T1027I	aCt	aTt	5	5	B.1.126	0.006378
S	1027	T1027N	aCt	aAt	5	5	B.1.2	0.000044
S	1027	T1027I	aCt	aTt	5	5	B.1.525	0.000566
S	1027	T1027N	aCt	aAt	5	5	B.1.617.2	0.000019
S	1027	T1027I	aCt	aTt	5	5	C.8	0.022321
S	1027	T1027T	acT	acC	4	4	AY.107	0.001864
S	1027	T1027I	aCt	aTt	4	4	AY.14	0.000352
S	1027	T1027I	aCt	aTt	4	4	AY.23	0.000279
S	1027	T1027T	acT	acC	4	4	AY.59	0.002119
S	1027	T1027T	acT	acA	2	4	B.1	0.000018
S	1027	T1027T	acT	acC	2	4	B.1	0.000018
S	1027	T1027N	aCt	aAt	4	4	B.1.1.370	0.050633
S	1027	T1027T	acT	acA	3	4	B.1.177	0.00004
S	1027	T1027T	acT	acC	1	4	B.1.177	0.000013
S	1027	T1027I	aCt	aTt	4	4	B.1.177.2	0.018182
S	1027	T1027I	aCt	aTt	4	4	B.1.565	0.003241
S	1027	T1027A	Act	Gct	4	4	B.1.617.2	0.000015
S	1027	T1027P	Act	Cct	2	3	All	0
S	1027	T1027P	AcT	CcA	1	3	All	0
S	1027	T1027I	aCt	aTt	3	3	AY.101	0.001471
S	1027	T1027I	aCt	aTt	3	3	AY.116	0.00086
S	1027	T1027I	aCt	aTt	3	3	AY.13	0.000483
S	1027	T1027T	acT	acC	3	3	AY.14	0.000264
S	1027	T1027I	aCt	aTt	3	3	AY.3.1	0.000256
S	1027	T1027T	acT	acC	3	3	AY.33	0.0002
S	1027	T1027I	aCt	aTt	3	3	AY.34.1	0.00153
S	1027	T1027T	acT	acC	3	3	AY.44	0.000018
S	1027	T1027I	aCt	aTt	3	3	AY.5.3	0.001012
S	1027	T1027I	aCt	aTt	3	3	AY.7.1	0.000338
S	1027	T1027I	aCt	aTt	3	3	AY.9.1	0.000251
S	1027	T1027T	acT	acC	3	3	B.1.1.28	0.000934
S	1027	T1027I	aCt	aTt	3	3	B.1.1.302	0.006224
S	1027	T1027I	aCt	aTt	3	3	B.1.1.306	0.001315
S	1027	T1027I	aCt	aTt	3	3	B.1.1.311	0.001074
S	1027	T1027I	aCt	aTt	3	3	B.1.1.349	0.030928
S	1027	T1027I	aCt	aTt	3	3	B.1.1.372	0.002066
S	1027	T1027T	acT	acC	2	3	B.1.1.39	0.001019
S	1027	T1027T	acT	acA	1	3	B.1.1.39	0.00051
S	1027	T1027S	aCt	aGt	3	3	B.1.1.429	0.013825
S	1027	T1027I	aCt	aTt	3	3	B.1.1.70	0.001023
S	1027	T1027del	ACT	---	3	3	B.1.177	0.00004
S	1027	T1027I	aCt	aTt	3	3	B.1.177.19	0.004292
S	1027	T1027A	Act	Gct	3	3	B.1.2	0.000026
S	1027	T1027I	aCt	aTt	3	3	B.1.239	0.003663
S	1027	T1027I	aCt	aTt	3	3	B.1.349	0.002144
S	1027	T1027I	aCt	aTt	3	3	B.1.596	0.000261
S	1027	T1027I	aCt	aTt	2	2	AD.2	0.000438
S	1027	T1027I	aCt	aTt	2	2	AE.8	0.000978
S	1027	T1027A	Act	Gct	2	2	AY.102	0.000053
S	1027	T1027I	aCt	aTt	2	2	AY.105	0.001286
S	1027	T1027A	Act	Gct	2	2	AY.106	0.00067
S	1027	T1027I	aCt	aTt	2	2	AY.107	0.000932
S	1027	T1027T	acT	acC	2	2	AY.110	0.000225
S	1027	T1027T	acT	acC	2	2	AY.117	0.000169
S	1027	T1027I	aCt	aTt	2	2	AY.118	0.000125
S	1027	T1027I	aCt	aTt	2	2	AY.120.2	0.002571
S	1027	T1027I	aCt	aTt	2	2	AY.16	0.000759
S	1027	T1027I	aCt	aTt	2	2	AY.16.1	0.00094
S	1027	T1027I	aCt	aTt	2	2	AY.19	0.002281
S	1027	T1027S	aCt	aGt	2	2	AY.25	0.000012
S	1027	T1027T	acT	acC	2	2	AY.3	0.00002
S	1027	T1027S	Act	Tct	2	2	AY.3	0.00002
S	1027	T1027I	aCt	aTt	2	2	AY.33	0.000134
S	1027	T1027I	aCt	aTt	2	2	AY.35	0.000466
S	1027	T1027I	aCt	aTt	2	2	AY.40	0.001929
S	1027	T1027N	aCt	aAt	2	2	AY.42	0.00008
S	1027	T1027A	Act	Gct	2	2	AY.44	0.000012
S	1027	T1027I	aCt	aTt	2	2	AY.46.2	0.001271
S	1027	T1027S	Act	Tct	2	2	AY.5	0.000041
S	1027	T1027I	aCt	aTt	2	2	AY.5.4	0.000553
S	1027	T1027I	aCt	aTt	2	2	AY.61	0.00021
S	1027	T1027I	aCt	aTt	2	2	AY.66	0.002139
S	1027	T1027T	acT	acC	2	2	AY.74	0.000231
S	1027	T1027I	aCt	aTt	2	2	AY.9	0.000135
S	1027	T1027I	aCt	aTt	2	2	AY.93	0.000546
S	1027	T1027I	aCt	aTt	2	2	AY.98	0.000158
S	1027	T1027A	Act	Gct	2	2	B.1	0.000018
S	1027	T1027del	ACT	---	2	2	B.1	0.000018
S	1027	T1027I	aCt	aTt	2	2	B.1.1.117	0.019417
S	1027	T1027I	aCt	aTt	2	2	B.1.1.161	0.007067
S	1027	T1027T	acT	acC	2	2	B.1.1.170	0.002494
S	1027	T1027I	aCt	aTt	2	2	B.1.1.222	0.000408
S	1027	T1027I	aCt	aTt	2	2	B.1.1.265	0.006309
S	1027	T1027I	aCt	aTt	2	2	B.1.1.279	0.002242
S	1027	T1027I	aCt	aTt	2	2	B.1.1.39	0.001019
S	1027	T1027I	aCt	aTt	2	2	B.1.1.409	0.005666
S	1027	T1027I	aCt	aTt	2	2	B.1.1.50	0.001358
S	1027	T1027I	aCt	aTt	2	2	B.1.1.528	0.009615
S	1027	T1027N	aCt	aAt	2	2	B.1.1.7	0.000002
S	1027	T1027I	aCt	aTt	2	2	B.1.177.54	0.001213
S	1027	T1027I	aCt	aTt	2	2	B.1.177.81	0.000379
S	1027	T1027I	aCt	aTt	2	2	B.1.177.86	0.000367
S	1027	T1027T	acT	acA	2	2	B.1.2	0.000018
S	1027	T1027I	aCt	aTt	2	2	B.1.301	0.011834
S	1027	T1027I	aCt	aTt	2	2	B.1.324	0.00321
S	1027	T1027I	aCt	aTt	2	2	B.1.336	0.004878
S	1027	T1027T	acT	acC	2	2	B.1.349	0.00143
S	1027	T1027N	aCt	aAt	2	2	B.1.351	0.000059
S	1027	T1027I	aCt	aTt	2	2	B.1.351.2	0.000605
S	1027	T1027I	aCt	aTt	2	2	B.1.351.3	0.001753
S	1027	T1027I	aCt	aTt	2	2	B.1.36.10	0.009569
S	1027	T1027I	aCt	aTt	2	2	B.1.36.18	0.00084
S	1027	T1027I	aCt	aTt	2	2	B.1.391	0.002255
S	1027	T1027I	aCt	aTt	2	2	B.1.456	0.006536
S	1027	T1027I	aCt	aTt	2	2	B.1.474	0.003802
S	1027	T1027I	aCt	aTt	2	2	B.1.503	0.004975
S	1027	T1027P	Act	Cct	1	2	B.1.617.2	0.000004
S	1027	T1027P	AcT	CcA	1	2	B.1.617.2	0.000004
S	1027	T1027I	aCt	aTt	2	2	B.1.623	0.001073
S	1027	T1027A	Act	Gct	2	2	B.1.632	0.013423
S	1027	T1027I	aCt	aTt	2	2	B.1.637	0.000146
S	1027	T1027I	aCt	aTt	2	2	C.35	0.001548
S	1027	T1027V	ACt	GTt	2	2	P.1.14	0.000096
S	1027	T1027T	acT	acC	2	2	Q.7	0.002222
S	1027	T1027I	aCt	aTt	2	2	Q.8	0.00033
S	1027	T1027I	aCt	aTt	1	1	A	0.000387
S	1027	T1027I	aCt	aTt	1	1	A.2.5.1	0.004808
S	1027	T1027N	aCt	aAt	1	1	AD.2	0.000219
S	1027	T1027del1	aCT	a-A	1	1	All	0
S	1027	T1027H	ACt	CAt	1	1	All	0
S	1027	T1027Q	ACT	CAA	1	1	All	0
S	1027	T1027K	aCT	aAA	1	1	All	0
S	1027	T1027F	ACt	TTt	1	1	All	0
S	1027	T1027I	aCt	aTt	1	1	AU.3	0.00211
S	1027	T1027I	aCt	aTt	1	1	AY.1	0.000396
S	1027	T1027N	aCt	aAt	1	1	AY.103	0.000006
S	1027	T1027I	aCt	aTt	1	1	AY.110	0.000113
S	1027	T1027A	Act	Gct	1	1	AY.113	0.000142
S	1027	T1027I	aCt	aTt	1	1	AY.116.1	0.000311
S	1027	T1027del	ACT	---	1	1	AY.120	0.000037
S	1027	T1027I	aCt	aTt	1	1	AY.120.1	0.000321
S	1027	T1027A	Act	Gct	1	1	AY.121	0.000135
S	1027	T1027T	acT	acC	1	1	AY.16.1	0.00047
S	1027	T1027I	aCt	aTt	1	1	AY.2	0.000356
S	1027	T1027I	aCt	aTt	1	1	AY.23.1	0.000417
S	1027	T1027A	Act	Gct	1	1	AY.25	0.000006
S	1027	T1027N	aCt	aAt	1	1	AY.25	0.000006
S	1027	T1027T	acT	acC	1	1	AY.26	0.000028
S	1027	T1027S	aCt	aGt	1	1	AY.3.1	0.000085
S	1027	T1027I	aCt	aTt	1	1	AY.30	0.000396
S	1027	T1027A	Act	Gct	1	1	AY.35	0.000233
S	1027	T1027I	aCt	aTt	1	1	AY.36	0.000148
S	1027	T1027T	acT	acC	1	1	AY.39	0.000025
S	1027	T1027A	Act	Gct	1	1	AY.39	0.000025
S	1027	T1027I	aCt	aTt	1	1	AY.4.1	0.000737
S	1027	T1027A	Act	Gct	1	1	AY.4.2	0.000022
S	1027	T1027I	aCt	aTt	1	1	AY.4.2.1	0.000149
S	1027	T1027del	ACT	---	1	1	AY.4.5	0.000107
S	1027	T1027I	aCt	aTt	1	1	AY.42	0.00004
S	1027	T1027A	Act	Gct	1	1	AY.43	0.000004
S	1027	T1027S	aCt	aGt	1	1	AY.43	0.000004
S	1027	T1027del	ACT	---	1	1	AY.43	0.000004
S	1027	T1027I	aCt	aTt	1	1	AY.46.1	0.001027
S	1027	T1027A	Act	Gct	1	1	AY.46.6	0.000072
S	1027	T1027I	aCt	aTt	1	1	AY.52	0.000814
S	1027	T1027I	aCt	aTt	1	1	AY.53	0.000288
S	1027	T1027I	aCt	aTt	1	1	AY.54	0.000095
S	1027	T1027I	aCt	aTt	1	1	AY.55	0.000917
S	1027	T1027I	aCt	aTt	1	1	AY.57	0.000656
S	1027	T1027I	aCt	aTt	1	1	AY.59	0.00053
S	1027	T1027I	aCt	aTt	1	1	AY.63	0.000387
S	1027	T1027del	ACT	---	1	1	AY.68	0.000274
S	1027	T1027I	aCt	aTt	1	1	AY.7	0.000196
S	1027	T1027I	aCt	aTt	1	1	AY.74	0.000116
S	1027	T1027S	Act	Tct	1	1	AY.75	0.000056
S	1027	T1027N	aCt	aAt	1	1	AY.8	0.000606
S	1027	T1027I	aCt	aTt	1	1	AY.80	0.001129
S	1027	T1027del	ACT	---	1	1	AY.81	0.001992
S	1027	T1027I	aCt	aTt	1	1	AY.85	0.000427
S	1027	T1027N	aCt	aAt	1	1	AY.9.1	0.000084
S	1027	T1027del	ACT	---	1	1	AY.9.1	0.000084
S	1027	T1027A	Act	Gct	1	1	AY.9.2	0.000037
S	1027	T1027I	aCt	aTt	1	1	AY.95	0.000761
S	1027	T1027I	aCt	aTt	1	1	AY.96	0.002075
S	1027	T1027T	acT	acA	1	1	AY.98.1	0.000048
S	1027	T1027I	aCt	aTt	1	1	AY.99	0.001049
S	1027	T1027I	aCt	aTt	1	1	AY.99.1	0.001553
S	1027	T1027S	aCt	aGt	1	1	B.1	0.000009
S	1027	T1027del1	aCT	a-A	1	1	B.1	0.000009
S	1027	T1027T	acT	acC	1	1	B.1.1	0.000018
S	1027	T1027del	ACT	---	1	1	B.1.1	0.000018
S	1027	T1027N	aCt	aAt	1	1	B.1.1	0.000018
S	1027	T1027I	aCt	aTt	1	1	B.1.1.1	0.000327
S	1027	T1027I	aCt	aTt	1	1	B.1.1.157	0.000913
S	1027	T1027P	Act	Cct	1	1	B.1.1.192	0.002309
S	1027	T1027I	aCt	aTt	1	1	B.1.1.207	0.001182
S	1027	T1027I	aCt	aTt	1	1	B.1.1.214	0.000055
S	1027	T1027I	aCt	aTt	1	1	B.1.1.220	0.001859
S	1027	T1027del	ACT	---	1	1	B.1.1.236	0.006897
S	1027	T1027I	aCt	aTt	1	1	B.1.1.236	0.006897
S	1027	T1027T	acT	acA	1	1	B.1.1.25	0.000569
S	1027	T1027I	aCt	aTt	1	1	B.1.1.253	0.002506
S	1027	T1027I	aCt	aTt	1	1	B.1.1.277	0.000759
S	1027	T1027I	aCt	aTt	1	1	B.1.1.280	0.003086
S	1027	T1027N	aCt	aAt	1	1	B.1.1.284	0.000107
S	1027	T1027I	aCt	aTt	1	1	B.1.1.303	0.002762
S	1027	T1027I	aCt	aTt	1	1	B.1.1.318	0.000302
S	1027	T1027I	aCt	aTt	1	1	B.1.1.322	0.008772
S	1027	T1027I	aCt	aTt	1	1	B.1.1.33	0.000421
S	1027	T1027N	aCt	aAt	1	1	B.1.1.335	0.012987
S	1027	T1027I	aCt	aTt	1	1	B.1.1.389	0.006061
S	1027	T1027I	aCt	aTt	1	1	B.1.1.391	0.008547
S	1027	T1027I	aCt	aTt	1	1	B.1.1.416	0.000905
S	1027	T1027A	Act	Gct	1	1	B.1.1.47	0.005348
S	1027	T1027I	aCt	aTt	1	1	B.1.1.48	0.002874
S	1027	T1027N	aCt	aAt	1	1	B.1.1.519	0.00004
S	1027	T1027T	acT	acC	1	1	B.1.1.519	0.00004
S	1027	T1027S	Act	Tct	1	1	B.1.1.63	0.000386
S	1027	T1027I	aCt	aTt	1	1	B.1.105	0.009615
S	1027	T1027del	ACT	---	1	1	B.1.140	0.018868
S	1027	T1027I	aCt	aTt	1	1	B.1.146	0.004237
S	1027	T1027A	Act	Gct	1	1	B.1.160	0.000031
S	1027	T1027N	aCt	aAt	1	1	B.1.177	0.000013
S	1027	T1027A	Act	Gct	1	1	B.1.177	0.000013
S	1027	T1027I	aCt	aTt	1	1	B.1.177.12	0.000152
S	1027	T1027I	aCt	aTt	1	1	B.1.177.15	0.000631
S	1027	T1027I	aCt	aTt	1	1	B.1.177.4	0.000211
S	1027	T1027I	aCt	aTt	1	1	B.1.177.42	0.000894
S	1027	T1027I	aCt	aTt	1	1	B.1.177.55	0.002331
S	1027	T1027I	aCt	aTt	1	1	B.1.177.57	0.000281
S	1027	T1027del	ACT	---	1	1	B.1.177.62	0.001192
S	1027	T1027del	ACT	---	1	1	B.1.177.63	0.002703
S	1027	T1027I	aCt	aTt	1	1	B.1.177.73	0.000566
S	1027	T1027I	aCt	aTt	1	1	B.1.177.83	0.001481
S	1027	T1027I	aCt	aTt	1	1	B.1.177.85	0.005435
S	1027	T1027I	aCt	aTt	1	1	B.1.179	0.003759
S	1027	T1027S	aCt	aGt	1	1	B.1.2	0.000009
S	1027	T1027del	ACT	---	1	1	B.1.2	0.000009
S	1027	T1027I	aCt	aTt	1	1	B.1.214	0.003663
S	1027	T1027I	aCt	aTt	1	1	B.1.22	0.001318
S	1027	T1027N	aCt	aAt	1	1	B.1.221.4	0.004167
S	1027	T1027I	aCt	aTt	1	1	B.1.234	0.000132
S	1027	T1027I	aCt	aTt	1	1	B.1.236	0.002053
S	1027	T1027I	aCt	aTt	1	1	B.1.237	0.004975
S	1027	T1027I	aCt	aTt	1	1	B.1.241	0.000812
S	1027	T1027I	aCt	aTt	1	1	B.1.247	0.014925
S	1027	T1027A	Act	Gct	1	1	B.1.258	0.000067
S	1027	T1027I	aCt	aTt	1	1	B.1.258.7	0.001912
S	1027	T1027I	aCt	aTt	1	1	B.1.311	0.000275
S	1027	T1027I	aCt	aTt	1	1	B.1.356	0.001727
S	1027	T1027I	aCt	aTt	1	1	B.1.36.29	0.000517
S	1027	T1027I	aCt	aTt	1	1	B.1.362	0.001541
S	1027	T1027I	aCt	aTt	1	1	B.1.369	0.000285
S	1027	T1027del	ACT	---	1	1	B.1.396	0.000706
S	1027	T1027I	aCt	aTt	1	1	B.1.396	0.000706
S	1027	T1027A	Act	Gct	1	1	B.1.398	0.002976
S	1027	T1027I	aCt	aTt	1	1	B.1.399	0.001934
S	1027	T1027I	aCt	aTt	1	1	B.1.400	0.000429
S	1027	T1027del	ACT	---	1	1	B.1.415	0.014286
S	1027	T1027I	aCt	aTt	1	1	B.1.415	0.014286
S	1027	T1027T	acT	acC	1	1	B.1.427	0.00005
S	1027	T1027I	aCt	aTt	1	1	B.1.470	0.001404
S	1027	T1027I	aCt	aTt	1	1	B.1.485	0.014925
S	1027	T1027I	aCt	aTt	1	1	B.1.487	0.019608
S	1027	T1027T	acT	acA	1	1	B.1.509	0.000866
S	1027	T1027A	Act	Gct	1	1	B.1.526	0.000024
S	1027	T1027N	aCt	aAt	1	1	B.1.561	0.000397
S	1027	T1027I	aCt	aTt	1	1	B.1.576	0.000907
S	1027	T1027I	aCt	aTt	1	1	B.1.577	0.000687
S	1027	T1027T	acT	acG	1	1	B.1.588	0.00091
S	1027	T1027I	aCt	aTt	1	1	B.1.609	0.000479
S	1027	T1027I	aCt	aTt	1	1	B.1.617.1	0.000129
S	1027	T1027K	aCT	aAA	1	1	B.1.617.2	0.000004
S	1027	T1027Q	ACT	CAA	1	1	B.1.617.2	0.000004
S	1027	T1027H	ACt	CAt	1	1	B.1.617.2	0.000004
S	1027	T1027del	ACT	---	1	1	B.1.617.2	0.000004
S	1027	T1027I	aCt	aTt	1	1	B.1.621.1	0.000506
S	1027	T1027I	aCt	aTt	1	1	B.1.625	0.002353
S	1027	T1027S	Act	Tct	1	1	B.1.637	0.000073
S	1027	T1027I	aCt	aTt	1	1	B.1.639	0.021739
S	1027	T1027I	aCt	aTt	1	1	B.1.9.4	0.006135
S	1027	T1027I	aCt	aTt	1	1	B.1.9.5	0.005682
S	1027	T1027I	aCt	aTt	1	1	B.55	0.00295
S	1027	T1027I	aCt	aTt	1	1	C.36	0.000911
S	1027	T1027del	ACT	---	1	1	C.37	0.000116
S	1027	T1027S	Act	Tct	1	1	C.37	0.000116
S	1027	T1027I	aCt	aTt	1	1	C.6	0.037037
S	1027	T1027S	aCt	aGt	1	1	D.2	0.000075
S	1027	T1027A	Act	Gct	1	1	D.2	0.000075
S	1027	T1027I	aCt	aTt	1	1	N.6	0.007092
S	1027	T1027F	ACt	TTt	1	1	P.1	0.000016
S	1027	T1027del	ACT	---	1	1	P.1	0.000016
S	1027	T1027I	aCt	aTt	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.