CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = S54S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF854S54SsyntcAtcG2481190.47983928053-28055
ORF854S54SsyntcAtcC248840.3387128053-28055
ORF854S54SsyntcAtcT248450.18145228053-28055

Details of the mutation S54S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF854S54StcAtcG119248All0.000023
ORF854S54StcAtcC84248All0.000016
ORF854S54StcAtcT45248All0.000009
ORF854S54StcAtcC4040AY.130.006439
ORF854S54StcAtcG2828AY.70.005488
ORF854S54StcAtcC1627AY.430.000071
ORF854S54StcAtcG827AY.430.000035
ORF854S54StcAtcT327AY.430.000013
ORF854S54StcAtcG1526B.1.1.70.000013
ORF854S54StcAtcT926B.1.1.70.000008
ORF854S54StcAtcC226B.1.1.70.000002
ORF854S54StcAtcT1218AY.1030.000075
ORF854S54StcAtcG418AY.1030.000025
ORF854S54StcAtcC218AY.1030.000012
ORF854S54StcAtcC59AY.40.000008
ORF854S54StcAtcG39AY.40.000005
ORF854S54StcAtcT19AY.40.000002
ORF854S54StcAtcC36AY.250.000018
ORF854S54StcAtcT26AY.250.000012
ORF854S54StcAtcG16AY.250.000006
ORF854S54StcAtcG56B.1.617.20.000019
ORF854S54StcAtcT16B.1.617.20.000004
ORF854S54StcAtcG55AY.160.001898
ORF854S54StcAtcG35B.10.000027
ORF854S54StcAtcC15B.10.000009
ORF854S54StcAtcT15B.10.000009
ORF854S54StcAtcT25P.10.000032
ORF854S54StcAtcC25P.10.000032
ORF854S54StcAtcG15P.10.000016
ORF854S54StcAtcT24AY.440.000012
ORF854S54StcAtcG14AY.440.000006
ORF854S54StcAtcC14AY.440.000006
ORF854S54StcAtcG44B.1.36.180.001681
ORF854S54StcAtcT44B.1.617.10.000516
ORF854S54StcAtcC33AY.1190.000106
ORF854S54StcAtcG23AY.270.000129
ORF854S54StcAtcT13AY.270.000065
ORF854S54StcAtcC23AY.30.00002
ORF854S54StcAtcT13AY.30.00001
ORF854S54StcAtcC23AY.390.000049
ORF854S54StcAtcG13AY.390.000025
ORF854S54StcAtcG23AY.4.20.000043
ORF854S54StcAtcT13AY.4.20.000022
ORF854S54StcAtcG33B.1.10.000054
ORF854S54StcAtcG33B.1.1600.000094
ORF854S54StcAtcG22AY.1160.000574
ORF854S54StcAtcC22AY.280.003781
ORF854S54StcAtcG22AY.360.000296
ORF854S54StcAtcG22AY.39.10.000079
ORF854S54StcAtcT12AY.60.000041
ORF854S54StcAtcG12AY.60.000041
ORF854S54StcAtcG12B.1.1770.000013
ORF854S54StcAtcT12B.1.1770.000013
ORF854S54StcAtcG22B.1.2430.000139
ORF854S54StcAtcG22D.20.00015
ORF854S54StcAtcG11A0.000387
ORF854S54StcAtcG11A.2.20.001689
ORF854S54StcAtcG11AY.1000.000046
ORF854S54StcAtcG11AY.1130.000142
ORF854S54StcAtcG11AY.116.10.000311
ORF854S54StcAtcG11AY.1200.000037
ORF854S54StcAtcG11AY.16.10.00047
ORF854S54StcAtcC11AY.200.000039
ORF854S54StcAtcG11AY.240.000431
ORF854S54StcAtcG11AY.410.000294
ORF854S54StcAtcG11AY.50.000021
ORF854S54StcAtcG11AY.610.000105
ORF854S54StcAtcT11AY.670.000464
ORF854S54StcAtcC11AY.9.20.000037
ORF854S54StcAtcG11AY.990.001049
ORF854S54StcAtcG11AZ.20.000821
ORF854S54StcAtcT11B.1.1.500.000679
ORF854S54StcAtcG11B.1.1.5230.001563
ORF854S54StcAtcT11B.1.177.750.001041
ORF854S54StcAtcG11B.1.20.000009
ORF854S54StcAtcG11B.1.2180.005155
ORF854S54StcAtcC11B.1.2790.000514
ORF854S54StcAtcG11B.1.3510.00003
ORF854S54StcAtcG11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.