CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = S54P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF854S54PnonsynTcaCca161616150.99938128053-28055
ORF854S54PnonsynTcACcT161610.00061881228053-28055

Details of the mutation S54P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF854S54PTcaCca16151616All0.000309
ORF854S54PTcACcT11616All0
ORF854S54PTcaCca972972B.1.1.70.00087
ORF854S54PTcaCca185185AY.40.000288
ORF854S54PTcaCca9191B.1.20.000801
ORF854S54PTcaCca2626AY.1030.000161
ORF854S54PTcaCca2525AY.440.000152
ORF854S54PTcaCca2222B.1.617.20.000083
ORF854S54PTcaCca1919B.1.1.2580.061889
ORF854S54PTcaCca1818B.1.2430.001253
ORF854S54PTcaCca1414AY.1020.000371
ORF854S54PTcaCca1313B.1.1770.000171
ORF854S54PTcaCca1212AY.340.001164
ORF854S54PTcaCca1212AY.470.000373
ORF854S54PTcaCca1212B.10.00011
ORF854S54PTcaCca1010AY.260.000283
ORF854S54PTcaCca1010B.1.5250.001132
ORF854S54PTcaCca99AY.250.000054
ORF854S54PTcaCca89AY.430.000035
ORF854S54PTcACcT19AY.430.000004
ORF854S54PTcaCca88AY.1190.000282
ORF854S54PTcaCca77AY.46.20.004447
ORF854S54PTcaCca66B.1.5170.002562
ORF854S54PTcaCca66B.1.5260.000141
ORF854S54PTcaCca66Q.80.000989
ORF854S54PTcaCca55AY.390.000124
ORF854S54PTcaCca55B.1.1.2220.00102
ORF854S54PTcaCca55B.1.1.2430.020408
ORF854S54PTcaCca55B.1.4290.000118
ORF854S54PTcaCca55P.10.000079
ORF854S54PTcaCca55P.1.140.000239
ORF854S54PTcaCca440.222222
ORF854S54PTcaCca44AY.30.00004
ORF854S54PTcaCca44B.1.10.000073
ORF854S54PTcaCca33AE.80.001467
ORF854S54PTcaCca33AY.1090.002219
ORF854S54PTcaCca33AY.640.001786
ORF854S54PTcaCca33B.1.1.5190.000119
ORF854S54PTcaCca33B.1.2340.000396
ORF854S54PTcaCca33B.1.4970.000944
ORF854S54PTcaCca33B.1.6370.000219
ORF854S54PTcaCca33C.370.000348
ORF854S54PTcaCca22AY.16.10.00094
ORF854S54PTcaCca22AY.230.000139
ORF854S54PTcaCca22AY.290.000032
ORF854S54PTcaCca22AY.3.10.000171
ORF854S54PTcaCca22AY.39.10.000079
ORF854S54PTcaCca22AY.46.60.000144
ORF854S54PTcaCca22AY.98.10.000097
ORF854S54PTcaCca22B.1.1.4160.00181
ORF854S54PTcaCca22B.1.160.160.001859
ORF854S54PTcaCca22B.1.177.210.000153
ORF854S54PTcaCca22B.1.2320.001075
ORF854S54PTcaCca22D.20.00015
ORF854S54PTcaCca11A0.000387
ORF854S54PTcaCca11AY.1000.000046
ORF854S54PTcaCca11AY.1130.000142
ORF854S54PTcaCca11AY.1140.000231
ORF854S54PTcaCca11AY.200.000039
ORF854S54PTcaCca11AY.320.000532
ORF854S54PTcaCca11AY.330.000067
ORF854S54PTcaCca11AY.360.000148
ORF854S54PTcaCca11AY.4.20.000022
ORF854S54PTcaCca11AY.90.000068
ORF854S54PTcaCca11AY.980.000079
ORF854S54PTcaCca11AY.99.20.000092
ORF854S54PTcaCca11B.1.1.2140.000055
ORF854S54PTcaCca11B.1.1.2200.001859
ORF854S54PTcaCca11B.1.1.250.000569
ORF854S54PTcaCca11B.1.1.370.000193
ORF854S54PTcaCca11B.1.1.3720.000689
ORF854S54PTcaCca11B.1.177.160.000664
ORF854S54PTcaCca11B.1.2060.000816
ORF854S54PTcaCca11B.1.2210.000071
ORF854S54PTcaCca11B.1.258.170.000104
ORF854S54PTcaCca11B.1.3110.000275
ORF854S54PTcaCca11B.1.36.310.001751
ORF854S54PTcaCca11B.1.3910.001127
ORF854S54PTcaCca11B.1.4160.001269
ORF854S54PTcaCca11B.1.416.10.001563
ORF854S54PTcaCca11B.1.4270.00005
ORF854S54PTcaCca11B.1.5960.000087
ORF854S54PTcaCca11B.1.617.10.000129
ORF854S54PTcaCca11B.1.6230.000536
ORF854S54PTcaCca11P.1.60.001946
ORF854S54PTcaCca11P.20.000187
ORF854S54PTcaCca11Q.40.000455
ORF854S54PTcaCca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.