CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 115 | R115L | nonsyn | cGt | cTt | 1982 | 1978 | 0.997982 | 28236-28238 | |
ORF8 | 115 | R115L | nonsyn | cGT | cTG | 1982 | 2 | 0.00100908 | 28236-28238 | |
ORF8 | 115 | R115L | nonsyn | cGT | cTC | 1982 | 1 | 0.000504541 | 28236-28238 | |
ORF8 | 115 | R115L | nonsyn | CGT | TTG | 1982 | 1 | 0.000504541 | 28236-28238 |
Details of the mutation R115L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 115 | R115L | cGt | cTt | 1978 | 1982 | All | 0.000378 |
ORF8 | 115 | R115L | cGT | cTG | 2 | 1982 | All | 0 |
ORF8 | 115 | R115L | cGT | cTC | 1 | 1982 | All | 0 |
ORF8 | 115 | R115L | CGT | TTG | 1 | 1982 | All | 0 |
ORF8 | 115 | R115L | cGt | cTt | 1337 | 1338 | B.1.1.7 | 0.001197 |
ORF8 | 115 | R115L | cGT | cTC | 1 | 1338 | B.1.1.7 | 0.000001 |
ORF8 | 115 | R115L | cGt | cTt | 136 | 136 | B.1.2 | 0.001198 |
ORF8 | 115 | R115L | cGt | cTt | 34 | 34 | AY.103 | 0.000211 |
ORF8 | 115 | R115L | cGt | cTt | 31 | 31 | B.1 | 0.000284 |
ORF8 | 115 | R115L | cGt | cTt | 29 | 29 | AY.4 | 0.000045 |
ORF8 | 115 | R115L | cGt | cTt | 27 | 27 | B.1.1 | 0.00049 |
ORF8 | 115 | R115L | cGt | cTt | 26 | 26 | P.1 | 0.00041 |
ORF8 | 115 | R115L | cGt | cTt | 25 | 25 | AY.25 | 0.00015 |
ORF8 | 115 | R115L | cGt | cTt | 21 | 21 | B.1.367 | 0.01664 |
ORF8 | 115 | R115L | cGt | cTt | 20 | 20 | B.1.258.7 | 0.038241 |
ORF8 | 115 | R115L | cGt | cTt | 15 | 15 | AY.26 | 0.000425 |
ORF8 | 115 | R115L | cGt | cTt | 15 | 15 | AY.43 | 0.000066 |
ORF8 | 115 | R115L | cGt | cTt | 14 | 14 | B.1.617.2 | 0.000053 |
ORF8 | 115 | R115L | cGt | cTt | 11 | 11 | B.1.1.519 | 0.000437 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | AY.119 | 0.000353 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | B.1.235 | 0.025189 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | B.1.351 | 0.000297 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | B.1.596 | 0.000871 |
ORF8 | 115 | R115L | cGt | cTt | 9 | 9 | AY.44 | 0.000055 |
ORF8 | 115 | R115L | cGt | cTt | 9 | 9 | AY.47 | 0.00028 |
ORF8 | 115 | R115L | cGt | cTt | 8 | 8 | B.1.177 | 0.000105 |
ORF8 | 115 | R115L | cGt | cTt | 7 | 7 | B.1.221 | 0.000497 |
ORF8 | 115 | R115L | cGt | cTt | 5 | 5 | B.1.160 | 0.000156 |
ORF8 | 115 | R115L | cGt | cTt | 5 | 5 | B.1.258 | 0.000333 |
ORF8 | 115 | R115L | cGt | cTt | 5 | 5 | B.1.526 | 0.000118 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | A.1 | 0.001127 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | AY.20 | 0.000155 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | AY.3 | 0.00004 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | AY.4.2 | 0.000087 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.438.1 | 0.000429 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.525 | 0.000453 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.609 | 0.001918 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | P.1.17 | 0.000647 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.39 | 0.000074 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.42 | 0.000121 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.5 | 0.000062 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.74 | 0.000347 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B | 0.000383 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B.1.1.271 | 0.166667 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B.1.311 | 0.000824 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 3 | B.1.427 | 0.000101 |
ORF8 | 115 | R115L | cGT | cTG | 1 | 3 | B.1.427 | 0.00005 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | C.37 | 0.000348 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AY.6 | 0.000082 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AY.61 | 0.00021 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AY.63 | 0.000774 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AZ.3 | 0.00304 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.177.24 | 0.002591 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.22 | 0.002635 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.369 | 0.00057 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.389 | 0.002004 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.499 | 0.002101 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.505 | 0.008772 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | P.1.14 | 0.000096 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | Q.3 | 0.00029 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | Q.8 | 0.00033 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | A | 0.000387 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | A.2 | 0.000662 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.111 | 0.000183 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.19 | 0.00114 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.81 | 0.001992 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AZ.1 | 0.000867 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AZ.6 | 0.008403 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.132 | 0.014925 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF8 | 115 | R115L | cGT | cTG | 1 | 1 | B.1.1.315 | 0.008475 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.373 | 0.02381 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.411 | 0.014706 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.112 | 0.005181 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.120 | 0.007692 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 115 | R115L | CGT | TTG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.213 | 0.014925 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.214 | 0.003663 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.234 | 0.000132 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.320 | 0.001245 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.400 | 0.000429 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.409 | 0.000781 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.44 | 0.008333 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.577 | 0.000687 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.60 | 0.015873 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | C.7 | 0.034483 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | D.2 | 0.000075 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | P.1.17.1 | 0.000875 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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