CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = P93S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF893P93SnonsynCctTct36362363420.9994528170-28172
ORF893P93SnonsynCcTTcA36362140.00038501728170-28172
ORF893P93SnonsynCCtAGt3636250.00013750628170-28172
ORF893P93SnonsynCcTTcC3636210.000027501228170-28172

Details of the mutation P93S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF893P93SCctTct3634236362All0.006951
ORF893P93SCcTTcA1436362All0.000003
ORF893P93SCCtAGt536362All0.000001
ORF893P93SCcTTcC136362All0
ORF893P93SCctTct3479534795AY.290.548843
ORF893P93SCctTct553553AY.29.10.12194
ORF893P93SCctTct146146B.1.617.20.00055
ORF893P93SCctTct128128AY.40.000199
ORF893P93SCctTct127127AY.740.014687
ORF893P93SCctTct5979B.1.1.70.000053
ORF893P93SCcTTcA1479B.1.1.70.000013
ORF893P93SCCtAGt579B.1.1.70.000004
ORF893P93SCcTTcC179B.1.1.70.000001
ORF893P93SCctTct7373AY.930.019934
ORF893P93SCctTct3535B.1.1.3060.015344
ORF893P93SCctTct2929AY.1000.001334
ORF893P93SCctTct2828AY.1020.000742
ORF893P93SCctTct2222AY.1170.001859
ORF893P93SCctTct2020AY.1030.000124
ORF893P93SCctTct1919B.1.1.2940.024051
ORF893P93SCctTct1717AY.430.000075
ORF893P93SCctTct1414B.10.000128
ORF893P93SCctTct1313AY.1100.001465
ORF893P93SCctTct1313AY.420.000523
ORF893P93SCctTct1212AY.360.001779
ORF893P93SCctTct1212AY.440.000073
ORF893P93SCctTct1111AY.790.013317
ORF893P93SCctTct1010AY.390.000247
ORF893P93SCctTct99B.1.1.5190.000357
ORF893P93SCctTct99P.10.000142
ORF893P93SCctTct88AY.340.000776
ORF893P93SCctTct88AY.610.000838
ORF893P93SCctTct77AY.250.000042
ORF893P93SCctTct77AY.410.002058
ORF893P93SCctTct77C.370.000812
ORF893P93SCctTct66AY.1110.001099
ORF893P93SCctTct66AY.880.005305
ORF893P93SCctTct66B.1.10.000109
ORF893P93SCctTct66B.1.3510.000178
ORF893P93SCctTct55A.2.50.002495
ORF893P93SCctTct55AY.1210.000677
ORF893P93SCctTct44AY.1180.000251
ORF893P93SCctTct44AY.46.60.000289
ORF893P93SCctTct44AY.470.000124
ORF893P93SCctTct44AY.50.000083
ORF893P93SCctTct44B.1.1770.000053
ORF893P93SCctTct44B.1.20.000035
ORF893P93SCctTct44B.1.4290.000094
ORF893P93SCctTct33A.280.007937
ORF893P93SCctTct33AY.20.001068
ORF893P93SCctTct33AY.400.002893
ORF893P93SCctTct33AY.450.000365
ORF893P93SCctTct33AY.460.000312
ORF893P93SCctTct33AY.5.30.001012
ORF893P93SCctTct33AY.680.000821
ORF893P93SCctTct33B.1.1.500.002037
ORF893P93SCctTct22AY.1050.001286
ORF893P93SCctTct22AY.120.000632
ORF893P93SCctTct22AY.190.002281
ORF893P93SCctTct22AY.540.000191
ORF893P93SCctTct22AY.580.001815
ORF893P93SCctTct22AY.640.00119
ORF893P93SCctTct22AY.690.000373
ORF893P93SCctTct22AY.860.00166
ORF893P93SCctTct22AY.950.001522
ORF893P93SCctTct22B.1.1.330.000842
ORF893P93SCctTct22B.1.177.230.006472
ORF893P93SCctTct22B.1.177.810.000379
ORF893P93SCctTct22B.1.2340.000264
ORF893P93SCctTct22B.1.5260.000047
ORF893P93SCctTct22N.90.011905
ORF893P93SCctTct11AY.1060.000335
ORF893P93SCctTct11AY.1080.001103
ORF893P93SCctTct11AY.1130.000142
ORF893P93SCctTct11AY.1200.000037
ORF893P93SCctTct11AY.140.000088
ORF893P93SCctTct11AY.370.000316
ORF893P93SCctTct11AY.39.10.00004
ORF893P93SCctTct11AY.4.40.000409
ORF893P93SCctTct11AY.590.00053
ORF893P93SCctTct11AY.600.000938
ORF893P93SCctTct11AY.75.10.00018
ORF893P93SCctTct11AY.780.001541
ORF893P93SCctTct11AY.90.000068
ORF893P93SCctTct11AY.9.20.000037
ORF893P93SCctTct11B.1.1.2140.000055
ORF893P93SCctTct11B.1.1.2170.003636
ORF893P93SCctTct11B.1.1.280.000311
ORF893P93SCctTct11B.1.1.3170.000412
ORF893P93SCctTct11B.1.1110.001175
ORF893P93SCctTct11B.1.1600.000031
ORF893P93SCctTct11B.1.160.200.008929
ORF893P93SCctTct11B.1.177.210.000076
ORF893P93SCctTct11B.1.177.520.001757
ORF893P93SCctTct11B.1.258.30.001675
ORF893P93SCctTct11B.1.360.000146
ORF893P93SCctTct11B.1.3690.000285
ORF893P93SCctTct11B.1.3900.010638
ORF893P93SCctTct11B.1.4450.011765
ORF893P93SCctTct11B.1.5250.000113
ORF893P93SCctTct11B.1.5640.000426
ORF893P93SCctTct11B.1.5960.000087
ORF893P93SCctTct11B.610.005747
ORF893P93SCctTct11P.1.100.000269
ORF893P93SCctTct11P.20.000187
ORF893P93SCctTct11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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