CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = P93P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF893P93PsynccTccA69330.47826128170-28172
ORF893P93PsynccTccC69290.4202928170-28172
ORF893P93PsynccTccG6970.10144928170-28172

Details of the mutation P93P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF893P93PccTccA3369All0.000006
ORF893P93PccTccC2969All0.000006
ORF893P93PccTccG769All0.000001
ORF893P93PccTccA1822B.1.1.70.000016
ORF893P93PccTccC422B.1.1.70.000004
ORF893P93PccTccG66AY.4.20.00013
ORF893P93PccTccC66B.1.617.20.000023
ORF893P93PccTccA44AY.1180.000251
ORF893P93PccTccC44AY.40.000006
ORF893P93PccTccC23AY.430.000009
ORF893P93PccTccA13AY.430.000004
ORF893P93PccTccA23D.20.00015
ORF893P93PccTccC13D.20.000075
ORF893P93PccTccC22AY.1030.000012
ORF893P93PccTccA12B.10.000009
ORF893P93PccTccC12B.10.000009
ORF893P93PccTccG12B.1.20.000009
ORF893P93PccTccA12B.1.20.000009
ORF893P93PccTccA110.055556
ORF893P93PccTccC11A.10.000282
ORF893P93PccTccA11AY.1020.000027
ORF893P93PccTccC11AY.1210.000135
ORF893P93PccTccC11AY.250.000006
ORF893P93PccTccC11AY.670.000464
ORF893P93PccTccC11B.1.1.2840.000107
ORF893P93PccTccA11B.1.177.60.000977
ORF893P93PccTccA11B.1.177.630.002703
ORF893P93PccTccC11B.1.3200.001245
ORF893P93PccTccC11B.1.36.350.002604
ORF893P93PccTccC11B.1.4230.010204
ORF893P93PccTccA11B.1.5760.000907
ORF893P93PccTccC11B.30.000831
ORF893P93PccTccA11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.