CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 38 | P38P | syn | ccT | ccC | 50896 | 50883 | 0.999745 | 28005-28007 | |
ORF8 | 38 | P38P | syn | ccT | ccA | 50896 | 10 | 0.000196479 | 28005-28007 | |
ORF8 | 38 | P38P | syn | ccT | ccG | 50896 | 3 | 0.0000589437 | 28005-28007 |
Details of the mutation P38P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 38 | P38P | ccT | ccC | 50883 | 50896 | All | 0.009732 |
ORF8 | 38 | P38P | ccT | ccA | 10 | 50896 | All | 0.000002 |
ORF8 | 38 | P38P | ccT | ccG | 3 | 50896 | All | 0.000001 |
ORF8 | 38 | P38P | ccT | ccC | 24842 | 24845 | B.1.617.2 | 0.09354 |
ORF8 | 38 | P38P | ccT | ccA | 2 | 24845 | B.1.617.2 | 0.000008 |
ORF8 | 38 | P38P | ccT | ccG | 1 | 24845 | B.1.617.2 | 0.000004 |
ORF8 | 38 | P38P | ccT | ccC | 20983 | 20983 | AY.100 | 0.965357 |
ORF8 | 38 | P38P | ccT | ccC | 1938 | 1938 | AY.101 | 0.950466 |
ORF8 | 38 | P38P | ccT | ccC | 320 | 320 | AY.102 | 0.008484 |
ORF8 | 38 | P38P | ccT | ccC | 227 | 227 | AY.117 | 0.019185 |
ORF8 | 38 | P38P | ccT | ccC | 171 | 171 | AY.103 | 0.001062 |
ORF8 | 38 | P38P | ccT | ccC | 164 | 165 | AY.25 | 0.000986 |
ORF8 | 38 | P38P | ccT | ccG | 1 | 165 | AY.25 | 0.000006 |
ORF8 | 38 | P38P | ccT | ccC | 160 | 160 | AY.98 | 0.012639 |
ORF8 | 38 | P38P | ccT | ccC | 131 | 131 | AY.44 | 0.000797 |
ORF8 | 38 | P38P | ccT | ccC | 129 | 129 | AY.84 | 0.05643 |
ORF8 | 38 | P38P | ccT | ccC | 110 | 110 | AY.86 | 0.091286 |
ORF8 | 38 | P38P | ccT | ccC | 107 | 107 | AY.92 | 0.030738 |
ORF8 | 38 | P38P | ccT | ccC | 96 | 96 | AY.118 | 0.006014 |
ORF8 | 38 | P38P | ccT | ccC | 90 | 90 | AY.39 | 0.002224 |
ORF8 | 38 | P38P | ccT | ccC | 79 | 79 | AY.113 | 0.011249 |
ORF8 | 38 | P38P | ccT | ccC | 78 | 78 | AY.116 | 0.022369 |
ORF8 | 38 | P38P | ccT | ccC | 73 | 74 | B.1.1.7 | 0.000065 |
ORF8 | 38 | P38P | ccT | ccA | 1 | 74 | B.1.1.7 | 0.000001 |
ORF8 | 38 | P38P | ccT | ccC | 70 | 70 | AY.42 | 0.002816 |
ORF8 | 38 | P38P | ccT | ccC | 58 | 58 | AY.111 | 0.010623 |
ORF8 | 38 | P38P | ccT | ccC | 48 | 48 | AY.4 | 0.000075 |
ORF8 | 38 | P38P | ccT | ccC | 48 | 48 | AY.99 | 0.050367 |
ORF8 | 38 | P38P | ccT | ccC | 45 | 45 | AY.5.3 | 0.015182 |
ORF8 | 38 | P38P | ccT | ccC | 38 | 38 | AY.43 | 0.000168 |
ORF8 | 38 | P38P | ccT | ccC | 36 | 36 | AY.13 | 0.005795 |
ORF8 | 38 | P38P | ccT | ccC | 35 | 35 | AY.90 | 0.023956 |
ORF8 | 38 | P38P | ccT | ccC | 33 | 33 | AY.69 | 0.00616 |
ORF8 | 38 | P38P | ccT | ccC | 31 | 31 | AY.98.1 | 0.001501 |
ORF8 | 38 | P38P | ccT | ccC | 28 | 28 | AY.79 | 0.033898 |
ORF8 | 38 | P38P | ccT | ccC | 26 | 26 | AY.19 | 0.029647 |
ORF8 | 38 | P38P | ccT | ccC | 24 | 24 | AY.23 | 0.001674 |
ORF8 | 38 | P38P | ccT | ccC | 24 | 24 | AY.78 | 0.03698 |
ORF8 | 38 | P38P | ccT | ccC | 23 | 23 | AY.120 | 0.000855 |
ORF8 | 38 | P38P | ccT | ccC | 22 | 22 | AY.110 | 0.002479 |
ORF8 | 38 | P38P | ccT | ccC | 22 | 22 | AY.88 | 0.019452 |
ORF8 | 38 | P38P | ccT | ccC | 20 | 20 | AY.77 | 0.022548 |
ORF8 | 38 | P38P | ccT | ccC | 19 | 19 | AY.5 | 0.000392 |
ORF8 | 38 | P38P | ccT | ccC | 19 | 19 | B.1 | 0.000174 |
ORF8 | 38 | P38P | ccT | ccC | 18 | 18 | AY.105 | 0.011576 |
ORF8 | 38 | P38P | ccT | ccC | 17 | 17 | AY.119 | 0.0006 |
ORF8 | 38 | P38P | ccT | ccC | 15 | 17 | AY.36 | 0.002223 |
ORF8 | 38 | P38P | ccT | ccA | 2 | 17 | AY.36 | 0.000296 |
ORF8 | 38 | P38P | ccT | ccC | 17 | 17 | AY.67 | 0.007892 |
ORF8 | 38 | P38P | ccT | ccC | 17 | 17 | AY.95 | 0.012938 |
ORF8 | 38 | P38P | ccT | ccC | 16 | 16 | AY.55 | 0.014679 |
ORF8 | 38 | P38P | ccT | ccC | 13 | 15 | AY.41 | 0.003821 |
ORF8 | 38 | P38P | ccT | ccA | 2 | 15 | AY.41 | 0.000588 |
ORF8 | 38 | P38P | ccT | ccC | 15 | 15 | AY.62 | 0.006536 |
ORF8 | 38 | P38P | ccT | ccC | 15 | 15 | B | 0.001917 |
ORF8 | 38 | P38P | ccT | ccC | 14 | 14 | AY.81 | 0.027888 |
ORF8 | 38 | P38P | ccT | ccC | 13 | 13 | AY.45 | 0.001582 |
ORF8 | 38 | P38P | ccT | ccC | 13 | 13 | AY.46 | 0.001353 |
ORF8 | 38 | P38P | ccT | ccC | 13 | 13 | AY.46.2 | 0.008259 |
ORF8 | 38 | P38P | ccT | ccC | 11 | 11 | AY.104 | 0.021825 |
ORF8 | 38 | P38P | ccT | ccC | 11 | 11 | AY.106 | 0.003684 |
ORF8 | 38 | P38P | ccT | ccC | 11 | 11 | AY.108 | 0.012128 |
ORF8 | 38 | P38P | ccT | ccC | 11 | 11 | AY.32 | 0.005857 |
ORF8 | 38 | P38P | ccT | ccC | 11 | 11 | AY.48 | 0.005116 |
ORF8 | 38 | P38P | ccT | ccC | 11 | 11 | AY.93 | 0.003004 |
ORF8 | 38 | P38P | ccT | ccC | 11 | 11 | P.1 | 0.000173 |
ORF8 | 38 | P38P | ccT | ccC | 10 | 10 | AY.3 | 0.000099 |
ORF8 | 38 | P38P | ccT | ccC | 10 | 10 | AY.47 | 0.000311 |
ORF8 | 38 | P38P | ccT | ccC | 10 | 10 | AY.85 | 0.004272 |
ORF8 | 38 | P38P | ccT | ccC | 9 | 9 | AY.21 | 0.017078 |
ORF8 | 38 | P38P | ccT | ccC | 8 | 8 | AY.39.1 | 0.000317 |
ORF8 | 38 | P38P | ccT | ccC | 7 | 7 | AY.16 | 0.002658 |
ORF8 | 38 | P38P | ccT | ccC | 7 | 7 | AY.20 | 0.000272 |
ORF8 | 38 | P38P | ccT | ccC | 7 | 7 | AY.33 | 0.000467 |
ORF8 | 38 | P38P | ccT | ccC | 7 | 7 | AY.83 | 0.012069 |
ORF8 | 38 | P38P | ccT | ccC | 7 | 7 | AY.87 | 0.005828 |
ORF8 | 38 | P38P | ccT | ccC | 7 | 7 | AY.9.2 | 0.000257 |
ORF8 | 38 | P38P | ccT | ccC | 6 | 6 | AY.109 | 0.004438 |
ORF8 | 38 | P38P | ccT | ccC | 6 | 6 | AY.34.1 | 0.00306 |
ORF8 | 38 | P38P | ccT | ccC | 6 | 6 | AY.54 | 0.000572 |
ORF8 | 38 | P38P | ccT | ccC | 6 | 6 | B.1.36 | 0.000875 |
ORF8 | 38 | P38P | ccT | ccC | 5 | 5 | AY.114 | 0.001156 |
ORF8 | 38 | P38P | ccT | ccC | 5 | 5 | AY.35 | 0.001165 |
ORF8 | 38 | P38P | ccT | ccC | 5 | 5 | AY.73 | 0.003327 |
ORF8 | 38 | P38P | ccT | ccC | 5 | 5 | B.1.2 | 0.000044 |
ORF8 | 38 | P38P | ccT | ccC | 4 | 4 | AY.107 | 0.001864 |
ORF8 | 38 | P38P | ccT | ccC | 4 | 4 | AY.26 | 0.000113 |
ORF8 | 38 | P38P | ccT | ccC | 4 | 4 | AY.4.5 | 0.00043 |
ORF8 | 38 | P38P | ccT | ccC | 4 | 4 | AY.46.1 | 0.004107 |
ORF8 | 38 | P38P | ccT | ccC | 4 | 4 | AY.70 | 0.000834 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 4 | B.1.1 | 0.000036 |
ORF8 | 38 | P38P | ccT | ccA | 1 | 4 | B.1.1 | 0.000018 |
ORF8 | 38 | P38P | ccT | ccG | 1 | 4 | B.1.1 | 0.000018 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.1 | 0.001187 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.14 | 0.000264 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.34 | 0.000291 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.46.6 | 0.000217 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.6 | 0.000123 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.60 | 0.002814 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.75 | 0.000168 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.75.1 | 0.000541 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | AY.91 | 0.002191 |
ORF8 | 38 | P38P | ccT | ccC | 3 | 3 | Q.8 | 0.000495 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | AY.4.2 | 0.000043 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | AY.4.3 | 0.001684 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | AY.53 | 0.000575 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | AY.7.1 | 0.000225 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.1.216 | 0.001781 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.351 | 0.000059 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.398 | 0.005952 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.526 | 0.000047 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.596 | 0.000174 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.617.1 | 0.000258 |
ORF8 | 38 | P38P | ccT | ccC | 2 | 2 | B.1.623 | 0.001073 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.121 | 0.000135 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.16.1 | 0.00047 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.27 | 0.000065 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.30 | 0.000396 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.37 | 0.000316 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.52 | 0.000814 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.56 | 0.001605 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.57 | 0.000656 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.58 | 0.000907 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.66 | 0.00107 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.71 | 0.000475 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.72 | 0.001361 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.80 | 0.001129 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.82 | 0.001357 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.89 | 0.004902 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | AY.96 | 0.002075 |
ORF8 | 38 | P38P | ccT | ccA | 1 | 1 | B.1.1.294 | 0.001266 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.126 | 0.001276 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.170 | 0.00431 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF8 | 38 | P38P | ccT | ccA | 1 | 1 | B.1.199 | 0.004132 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.311 | 0.000275 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.36.18 | 0.00042 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.497 | 0.000315 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.524 | 0.001406 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | B.1.632 | 0.006711 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 38 | P38P | ccT | ccC | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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