CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = M1I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF81M1InonsynatGatT2491730.69477927894-27896
ORF81M1InonsynatGatA249470.18875527894-27896
ORF81M1InonsynatGatC249290.11646627894-27896

Details of the mutation M1I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF81M1IatGatT173249All0.000033
ORF81M1IatGatA47249All0.000009
ORF81M1IatGatC29249All0.000006
ORF81M1IatGatT814AY.40.000012
ORF81M1IatGatA514AY.40.000008
ORF81M1IatGatC114AY.40.000002
ORF81M1IatGatT1214AY.430.000053
ORF81M1IatGatC214AY.430.000009
ORF81M1IatGatT1214AY.440.000073
ORF81M1IatGatA214AY.440.000012
ORF81M1IatGatT914B.1.1.70.000008
ORF81M1IatGatA314B.1.1.70.000003
ORF81M1IatGatC214B.1.1.70.000002
ORF81M1IatGatT1213AY.1030.000075
ORF81M1IatGatC113AY.1030.000006
ORF81M1IatGatT1313B.1.2580.000865
ORF81M1IatGatA612B.10.000055
ORF81M1IatGatT412B.10.000037
ORF81M1IatGatC212B.10.000018
ORF81M1IatGatT1112B.1.617.20.000041
ORF81M1IatGatA112B.1.617.20.000004
ORF81M1IatGatT88B.1.617.10.001032
ORF81M1IatGatA57B.1.10.000091
ORF81M1IatGatT17B.1.10.000018
ORF81M1IatGatC17B.1.10.000018
ORF81M1IatGatT67B.1.1.5190.000238
ORF81M1IatGatA17B.1.1.5190.00004
ORF81M1IatGatT260.111111
ORF81M1IatGatA260.111111
ORF81M1IatGatC260.111111
ORF81M1IatGatT66AY.90.000406
ORF81M1IatGatT36P.10.000047
ORF81M1IatGatA26P.10.000032
ORF81M1IatGatC16P.10.000016
ORF81M1IatGatT55AY.60.000206
ORF81M1IatGatA45B.1.6250.009412
ORF81M1IatGatC15B.1.6250.002353
ORF81M1IatGatT44AY.250.000024
ORF81M1IatGatT34AY.98.10.000145
ORF81M1IatGatC14AY.98.10.000048
ORF81M1IatGatC44B.1.1.2850.026144
ORF81M1IatGatC23A.23.10.001408
ORF81M1IatGatT13A.23.10.000704
ORF81M1IatGatT33AY.380.001498
ORF81M1IatGatT33B.1.1600.000094
ORF81M1IatGatT23B.1.5260.000047
ORF81M1IatGatC13B.1.5260.000024
ORF81M1IatGatT33B.1.6280.001057
ORF81M1IatGatA33D.20.000225
ORF81M1IatGatT12A.10.000282
ORF81M1IatGatA12A.10.000282
ORF81M1IatGatC12AY.1170.000085
ORF81M1IatGatT12AY.1170.000085
ORF81M1IatGatT22AY.130.000322
ORF81M1IatGatT22AY.260.000057
ORF81M1IatGatT12AY.290.000016
ORF81M1IatGatC12AY.290.000016
ORF81M1IatGatC12AY.4.20.000022
ORF81M1IatGatT12AY.4.20.000022
ORF81M1IatGatT22AY.750.000112
ORF81M1IatGatT12AY.99.20.000092
ORF81M1IatGatC12AY.99.20.000092
ORF81M1IatGatT22B.1.1.5230.003125
ORF81M1IatGatA12B.1.1770.000013
ORF81M1IatGatT12B.1.1770.000013
ORF81M1IatGatT22B.1.177.40.000422
ORF81M1IatGatT12B.1.4270.00005
ORF81M1IatGatC12B.1.4270.00005
ORF81M1IatGatC12B.1.5960.000087
ORF81M1IatGatA12B.1.5960.000087
ORF81M1IatGatT22B.40.004415
ORF81M1IatGatC12B.400.000364
ORF81M1IatGatT12B.400.000364
ORF81M1IatGatT11AY.1000.000046
ORF81M1IatGatC11AY.230.00007
ORF81M1IatGatT11AY.30.00001
ORF81M1IatGatT11AY.420.00004
ORF81M1IatGatT11AY.460.000104
ORF81M1IatGatT11AY.570.000656
ORF81M1IatGatT11AY.70.000196
ORF81M1IatGatA11AY.840.000437
ORF81M1IatGatT11AY.910.00073
ORF81M1IatGatT11B0.000128
ORF81M1IatGatA11B.1.1.1690.018182
ORF81M1IatGatA11B.1.1.2820.011628
ORF81M1IatGatT11B.1.1.3060.000438
ORF81M1IatGatT11B.1.1.3980.003226
ORF81M1IatGatT11B.1.110.30.000718
ORF81M1IatGatT11B.1.160.160.000929
ORF81M1IatGatT11B.1.177.140.006098
ORF81M1IatGatA11B.1.177.310.011494
ORF81M1IatGatT11B.1.20.000009
ORF81M1IatGatT11B.1.2210.000071
ORF81M1IatGatA11B.1.258.110.000396
ORF81M1IatGatA11B.1.258.230.02381
ORF81M1IatGatT11B.1.3690.000285
ORF81M1IatGatT11B.1.4220.000812
ORF81M1IatGatA11B.1.4520.013699
ORF81M1IatGatT11B.1.5250.000113
ORF81M1IatGatA11B.1.575.10.002439
ORF81M1IatGatA11B.1.6370.000073
ORF81M1IatGatT11B.280.003279
ORF81M1IatGatA11B.550.00295
ORF81M1IatGatT11B.570.015152
ORF81M1IatGatT11C.370.000116
ORF81M1IatGatT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.