CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = L95F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF895L95FnonsynttGttT312526720.8550428176-28178
ORF895L95FnonsynttGttC31254530.1449628176-28178

Details of the mutation L95F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF895L95FttGttT26723125All0.000511
ORF895L95FttGttC4533125All0.000087
ORF895L95FttGttT143281AY.1030.000888
ORF895L95FttGttC138281AY.1030.000857
ORF895L95FttGttT220226AY.440.001339
ORF895L95FttGttC6226AY.440.000037
ORF895L95FttGttT154169AY.40.00024
ORF895L95FttGttC15169AY.40.000023
ORF895L95FttGttT142164B.1.617.20.000535
ORF895L95FttGttC22164B.1.617.20.000083
ORF895L95FttGttT140147B.1.10.00254
ORF895L95FttGttC7147B.1.10.000127
ORF895L95FttGttT141142A0.054567
ORF895L95FttGttC1142A0.000387
ORF895L95FttGttT140141B.1.1770.001843
ORF895L95FttGttC1141B.1.1770.000013
ORF895L95FttGttC136137B.1.466.20.053208
ORF895L95FttGttT1137B.1.466.20.000391
ORF895L95FttGttT127127AY.90.008585
ORF895L95FttGttT120120B.6.80.991736
ORF895L95FttGttT118118B.1.1600.00368
ORF895L95FttGttT107107B.1.1.2160.09528
ORF895L95FttGttT7482B.10.000678
ORF895L95FttGttC882B.10.000073
ORF895L95FttGttT7677AY.1180.004761
ORF895L95FttGttC177AY.1180.000063
ORF895L95FttGttT6974AY.430.000306
ORF895L95FttGttC574AY.430.000022
ORF895L95FttGttT4856AY.250.000289
ORF895L95FttGttC856AY.250.000048
ORF895L95FttGttT4749B.1.2580.003128
ORF895L95FttGttC249B.1.2580.000133
ORF895L95FttGttT4848B.1.4270.002424
ORF895L95FttGttT3240B.1.1.70.000029
ORF895L95FttGttC840B.1.1.70.000007
ORF895L95FttGttT3435B.1.1.5190.00135
ORF895L95FttGttC135B.1.1.5190.00004
ORF895L95FttGttT3131C.360.028233
ORF895L95FttGttT2323B.60.020928
ORF895L95FttGttC1522B.1.1.2840.001611
ORF895L95FttGttT722B.1.1.2840.000752
ORF895L95FttGttT1221AY.30.000119
ORF895L95FttGttC921AY.30.00009
ORF895L95FttGttT2121B.1.1.2830.488372
ORF895L95FttGttT2020B.1.177.180.023202
ORF895L95FttGttT1919B0.002428
ORF895L95FttGttT1719C.370.001973
ORF895L95FttGttC219C.370.000232
ORF895L95FttGttT1118AY.1020.000292
ORF895L95FttGttC718AY.1020.000186
ORF895L95FttGttT1717AY.9.10.001423
ORF895L95FttGttT1717B.1.1.3970.038288
ORF895L95FttGttC1015AY.1200.000372
ORF895L95FttGttT515AY.1200.000186
ORF895L95FttGttT1515B.1.2340.001979
ORF895L95FttGttT1414AY.290.000221
ORF895L95FttGttT1414B.1.1.2200.026022
ORF895L95FttGttT1314B.1.4290.000306
ORF895L95FttGttC114B.1.4290.000024
ORF895L95FttGttT1013AY.50.000206
ORF895L95FttGttC313AY.50.000062
ORF895L95FttGttT1213B.1.20.000106
ORF895L95FttGttC113B.1.20.000009
ORF895L95FttGttT1313B.1.6050.077381
ORF895L95FttGttT1212B.1.177.40.002533
ORF895L95FttGttT1212B.1.617.10.001548
ORF895L95FttGttT1111AY.4.20.000239
ORF895L95FttGttT1010AY.390.000247
ORF895L95FttGttT99A.10.002537
ORF895L95FttGttT59AY.260.000142
ORF895L95FttGttC49AY.260.000113
ORF895L95FttGttT99B.1.6320.060403
ORF895L95FttGttT88B.1.1.280.00249
ORF895L95FttGttT88B.1.1.4190.059259
ORF895L95FttGttT88B.1.2430.000557
ORF895L95FttGttT88B.1.258.170.000832
ORF895L95FttGttT88B.1.6210.000708
ORF895L95FttGttT77B.1.1.4441
ORF895L95FttGttT66AY.140.000528
ORF895L95FttGttT56AY.470.000156
ORF895L95FttGttC16AY.470.000031
ORF895L95FttGttT66AZ.20.004926
ORF895L95FttGttT66B.1.1.3690.002677
ORF895L95FttGttC56B.1.1.5260.01773
ORF895L95FttGttT16B.1.1.5260.003546
ORF895L95FttGttT66P.10.000095
ORF895L95FttGttT55AY.160.001898
ORF895L95FttGttT55AY.330.000334
ORF895L95FttGttT55AY.540.000477
ORF895L95FttGttT55B.1.1.2140.000277
ORF895L95FttGttT55B.1.177.860.000917
ORF895L95FttGttT55B.1.4080.01845
ORF895L95FttGttT45B.1.5260.000094
ORF895L95FttGttC15B.1.5260.000024
ORF895L95FttGttT44AY.230.000279
ORF895L95FttGttT44AY.710.0019
ORF895L95FttGttT44AY.920.001149
ORF895L95FttGttT44AY.980.000316
ORF895L95FttGttT44B.1.1.10.001307
ORF895L95FttGttT44B.1.1.2910.00297
ORF895L95FttGttT44B.1.1.4340.001394
ORF895L95FttGttT44B.1.110.30.002874
ORF895L95FttGttT44B.1.2320.002149
ORF895L95FttGttT44B.1.360.000584
ORF895L95FttGttT44B.1.4780.047059
ORF895L95FttGttT44C.140.017316
ORF895L95FttGttT44L.30.014184
ORF895L95FttGttT33AY.100.00159
ORF895L95FttGttT33AY.1190.000106
ORF895L95FttGttT23AY.120.000632
ORF895L95FttGttC13AY.120.000316
ORF895L95FttGttT33AY.270.000194
ORF895L95FttGttT33AY.420.000121
ORF895L95FttGttC23AY.450.000243
ORF895L95FttGttT13AY.450.000122
ORF895L95FttGttT33AY.460.000312
ORF895L95FttGttT33AY.550.002752
ORF895L95FttGttT23AY.610.00021
ORF895L95FttGttC13AY.610.000105
ORF895L95FttGttT33AY.98.10.000145
ORF895L95FttGttT33B.1.1.3180.000905
ORF895L95FttGttT33B.1.177.630.008108
ORF895L95FttGttT33B.1.2400.000647
ORF895L95FttGttT33B.1.2410.002435
ORF895L95FttGttT23B.1.4590.008163
ORF895L95FttGttC13B.1.4590.004082
ORF895L95FttGttT33B.1.5820.001472
ORF895L95FttGttT33W.40.004054
ORF895L95FttGttT12AY.1000.000046
ORF895L95FttGttC12AY.1000.000046
ORF895L95FttGttT22AY.116.10.000623
ORF895L95FttGttT22AY.1170.000169
ORF895L95FttGttC22AY.120.10.000642
ORF895L95FttGttT22AY.1210.000271
ORF895L95FttGttC22AY.200.000078
ORF895L95FttGttT12AY.360.000148
ORF895L95FttGttC12AY.360.000148
ORF895L95FttGttC22AY.4.40.000818
ORF895L95FttGttC22AY.46.40.000329
ORF895L95FttGttT22AY.75.10.000361
ORF895L95FttGttT22B.1.1.1410.004024
ORF895L95FttGttT22B.1.1.1610.007067
ORF895L95FttGttT22B.1.1.250.001137
ORF895L95FttGttT22B.1.1.2770.001517
ORF895L95FttGttT22B.1.1.3060.000877
ORF895L95FttGttT22B.1.1.370.000386
ORF895L95FttGttT22B.1.1.4090.005666
ORF895L95FttGttT22B.1.177.810.000379
ORF895L95FttGttT22B.1.3590.045455
ORF895L95FttGttT22B.1.4040.002604
ORF895L95FttGttT22B.1.4110.007407
ORF895L95FttGttC22B.1.415.10.015152
ORF895L95FttGttC22B.1.4620.014493
ORF895L95FttGttT22B.1.4760.2
ORF895L95FttGttC22B.1.4990.002101
ORF895L95FttGttT12B.1.5650.00081
ORF895L95FttGttC12B.1.5650.00081
ORF895L95FttGttT22B.1.6370.000146
ORF895L95FttGttT22B.550.0059
ORF895L95FttGttT22R.10.00018
ORF895L95FttGttT110.055556
ORF895L95FttGttT11A.20.000662
ORF895L95FttGttT11A.30.002096
ORF895L95FttGttT11AD.20.000219
ORF895L95FttGttT11AY.1010.00049
ORF895L95FttGttT11AY.1040.001984
ORF895L95FttGttT11AY.1060.000335
ORF895L95FttGttT11AY.1160.000287
ORF895L95FttGttT11AY.130.000161
ORF895L95FttGttT11AY.23.10.000417
ORF895L95FttGttT11AY.4.50.000107
ORF895L95FttGttT11AY.410.000294
ORF895L95FttGttC11AY.46.60.000072
ORF895L95FttGttT11AY.480.000465
ORF895L95FttGttT11AY.5.30.000337
ORF895L95FttGttT11AY.530.000288
ORF895L95FttGttT11AY.590.00053
ORF895L95FttGttT11AY.620.000436
ORF895L95FttGttT11AY.640.000595
ORF895L95FttGttC11AY.670.000464
ORF895L95FttGttT11AY.690.000187
ORF895L95FttGttT11AY.7.10.000113
ORF895L95FttGttT11AY.7.20.000559
ORF895L95FttGttT11AY.740.000116
ORF895L95FttGttT11AY.750.000056
ORF895L95FttGttC11AY.790.001211
ORF895L95FttGttT11AY.930.000273
ORF895L95FttGttT11AZ.30.00152
ORF895L95FttGttT11B.1.1.1340.011364
ORF895L95FttGttT11B.1.1.150.013514
ORF895L95FttGttT11B.1.1.1530.001095
ORF895L95FttGttT11B.1.1.1630.007634
ORF895L95FttGttT11B.1.1.1720.018182
ORF895L95FttGttT11B.1.1.2070.001182
ORF895L95FttGttT11B.1.1.2220.000204
ORF895L95FttGttT11B.1.1.2400.004695
ORF895L95FttGttC11B.1.1.2410.00207
ORF895L95FttGttT11B.1.1.2440.015385
ORF895L95FttGttT11B.1.1.2790.001121
ORF895L95FttGttT11B.1.1.2880.001916
ORF895L95FttGttT11B.1.1.3020.002075
ORF895L95FttGttT11B.1.1.3110.000358
ORF895L95FttGttT11B.1.1.3260.001761
ORF895L95FttGttC11B.1.1.330.000421
ORF895L95FttGttT11B.1.1.3440.010753
ORF895L95FttGttC11B.1.1.3510.002793
ORF895L95FttGttT11B.1.1.3540.004386
ORF895L95FttGttT11B.1.1.3960.045455
ORF895L95FttGttT11B.1.1.4590.015385
ORF895L95FttGttT11B.1.1.500.000679
ORF895L95FttGttT11B.1.1.580.005376
ORF895L95FttGttT11B.1.1.700.000341
ORF895L95FttGttT11B.1.1570.002985
ORF895L95FttGttT11B.1.1640.014925
ORF895L95FttGttC11B.1.177.120.000152
ORF895L95FttGttT11B.1.177.230.003236
ORF895L95FttGttT11B.1.1820.007246
ORF895L95FttGttC11B.1.221.10.002907
ORF895L95FttGttC11B.1.2220.001692
ORF895L95FttGttT11B.1.258.140.00098
ORF895L95FttGttT11B.1.2600.003344
ORF895L95FttGttT11B.1.3020.013333
ORF895L95FttGttC11B.1.3510.00003
ORF895L95FttGttC11B.1.351.50.0006
ORF895L95FttGttT11B.1.36.10.00114
ORF895L95FttGttT11B.1.36.290.000517
ORF895L95FttGttT11B.1.36.80.001
ORF895L95FttGttT11B.1.3690.000285
ORF895L95FttGttT11B.1.3800.006623
ORF895L95FttGttT11B.1.3910.001127
ORF895L95FttGttT11B.1.438.10.000107
ORF895L95FttGttC11B.1.4560.003268
ORF895L95FttGttT11B.1.4680.005714
ORF895L95FttGttT11B.1.4690.00361
ORF895L95FttGttT11B.1.5230.002451
ORF895L95FttGttT11B.1.5240.001406
ORF895L95FttGttT11B.1.5250.000113
ORF895L95FttGttT11B.1.5380.008065
ORF895L95FttGttT11B.1.5480.035714
ORF895L95FttGttT11B.1.5510.00129
ORF895L95FttGttT11B.1.5600.00463
ORF895L95FttGttT11B.1.5750.000303
ORF895L95FttGttT11B.1.5760.000907
ORF895L95FttGttT11B.1.5770.000687
ORF895L95FttGttT11B.1.5850.027778
ORF895L95FttGttT11B.1.5950.000261
ORF895L95FttGttT11B.1.6120.002653
ORF895L95FttGttT11B.30.000831
ORF895L95FttGttT11B.400.000364
ORF895L95FttGttT11B.6.60.000889
ORF895L95FttGttT11C.10.002392
ORF895L95FttGttT11C.350.000774
ORF895L95FttGttC11D.20.000075
ORF895L95FttGttT11P.1.140.000048
ORF895L95FttGttT11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.