CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 84 | L84S | nonsyn | tTa | tCa | 16874 | 16873 | 0.999941 | 28143-28145 | |
ORF8 | 84 | L84S | nonsyn | tTA | tCG | 16874 | 1 | 0.0000592628 | 28143-28145 |
Details of the mutation L84S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 84 | L84S | tTa | tCa | 16873 | 16874 | All | 0.003227 |
ORF8 | 84 | L84S | tTA | tCG | 1 | 16874 | All | 0 |
ORF8 | 84 | L84S | tTa | tCa | 3523 | 3523 | A.1 | 0.992954 |
ORF8 | 84 | L84S | tTa | tCa | 2330 | 2330 | A | 0.901703 |
ORF8 | 84 | L84S | tTa | tCa | 1964 | 1964 | A.2.5 | 0.98004 |
ORF8 | 84 | L84S | tTa | tCa | 1495 | 1495 | A.2 | 0.989411 |
ORF8 | 84 | L84S | tTa | tCa | 1413 | 1413 | A.23.1 | 0.99507 |
ORF8 | 84 | L84S | tTa | tCa | 626 | 626 | A.2.5.2 | 0.984277 |
ORF8 | 84 | L84S | tTa | tCa | 600 | 600 | A.27 | 0.993377 |
ORF8 | 84 | L84S | tTa | tCa | 590 | 590 | A.2.2 | 0.996622 |
ORF8 | 84 | L84S | tTa | tCa | 517 | 517 | A.5 | 0.994231 |
ORF8 | 84 | L84S | tTa | tCa | 473 | 473 | A.3 | 0.991614 |
ORF8 | 84 | L84S | tTa | tCa | 376 | 376 | A.28 | 0.994709 |
ORF8 | 84 | L84S | tTa | tCa | 358 | 358 | A.21 | 0.99169 |
ORF8 | 84 | L84S | tTa | tCa | 296 | 296 | A.2.4 | 0.996633 |
ORF8 | 84 | L84S | tTa | tCa | 225 | 225 | B | 0.028758 |
ORF8 | 84 | L84S | tTa | tCa | 207 | 207 | A.2.3 | 0.981043 |
ORF8 | 84 | L84S | tTa | tCa | 207 | 207 | A.2.5.1 | 0.995192 |
ORF8 | 84 | L84S | tTa | tCa | 195 | 195 | A.6 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 187 | 187 | A.29 | 0.994681 |
ORF8 | 84 | L84S | tTa | tCa | 115 | 115 | B.1 | 0.001053 |
ORF8 | 84 | L84S | tTa | tCa | 106 | 106 | A.19 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 95 | 95 | A.2.5.3 | 0.979381 |
ORF8 | 84 | L84S | tTa | tCa | 92 | 92 | A.23 | 0.968421 |
ORF8 | 84 | L84S | tTa | tCa | 83 | 83 | AY.4 | 0.000129 |
ORF8 | 84 | L84S | tTa | tCa | 78 | 78 | A.4 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 63 | 63 | A.15 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 62 | 62 | A.16 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 55 | 55 | A.25 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 50 | 51 | B.1.1.7 | 0.000045 |
ORF8 | 84 | L84S | tTA | tCG | 1 | 51 | B.1.1.7 | 0.000001 |
ORF8 | 84 | L84S | tTa | tCa | 50 | 50 | B.1.1.318 | 0.015088 |
ORF8 | 84 | L84S | tTa | tCa | 45 | 45 | B.1.177.81 | 0.00852 |
ORF8 | 84 | L84S | tTa | tCa | 26 | 26 | AY.120 | 0.000967 |
ORF8 | 84 | L84S | tTa | tCa | 22 | 22 | A.9 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 20 | 20 | A.18 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 17 | 17 | A.11 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 17 | 17 | A.7 | 0.944444 |
ORF8 | 84 | L84S | tTa | tCa | 17 | 17 | B.1.1 | 0.000308 |
ORF8 | 84 | L84S | tTa | tCa | 15 | 15 | A.22 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 14 | 14 | A.24 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 14 | 14 | AY.44 | 0.000085 |
ORF8 | 84 | L84S | tTa | tCa | 13 | 13 | A.26 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 13 | 13 | B.1.177.54 | 0.007884 |
ORF8 | 84 | L84S | tTa | tCa | 11 | 11 | A.17 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 11 | 11 | B.1.617.2 | 0.000041 |
ORF8 | 84 | L84S | tTa | tCa | 10 | 10 | B.1.617.1 | 0.00129 |
ORF8 | 84 | L84S | tTa | tCa | 8 | 8 | AY.3 | 0.00008 |
ORF8 | 84 | L84S | tTa | tCa | 7 | 7 | A.30 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 7 | 7 | AY.103 | 0.000043 |
ORF8 | 84 | L84S | tTa | tCa | 7 | 7 | B.1.2 | 0.000062 |
ORF8 | 84 | L84S | tTa | tCa | 6 | 6 | A.12 | 1 |
ORF8 | 84 | L84S | tTa | tCa | 6 | 6 | AY.102 | 0.000159 |
ORF8 | 84 | L84S | tTa | tCa | 6 | 6 | AY.46.2 | 0.003812 |
ORF8 | 84 | L84S | tTa | tCa | 6 | 6 | B.1.351 | 0.000178 |
ORF8 | 84 | L84S | tTa | tCa | 6 | 6 | B.1.621 | 0.000531 |
ORF8 | 84 | L84S | tTa | tCa | 5 | 5 | AY.34 | 0.000485 |
ORF8 | 84 | L84S | tTa | tCa | 5 | 5 | B.1.1.432 | 0.006329 |
ORF8 | 84 | L84S | tTa | tCa | 4 | 4 | B.1.177 | 0.000053 |
ORF8 | 84 | L84S | tTa | tCa | 4 | 4 | B.1.239 | 0.004884 |
ORF8 | 84 | L84S | tTa | tCa | 4 | 4 | B.1.429 | 0.000094 |
ORF8 | 84 | L84S | tTa | tCa | 4 | 4 | B.1.526 | 0.000094 |
ORF8 | 84 | L84S | tTa | tCa | 4 | 4 | P.1 | 0.000063 |
ORF8 | 84 | L84S | tTa | tCa | 3 | 3 | AY.113 | 0.000427 |
ORF8 | 84 | L84S | tTa | tCa | 3 | 3 | AY.25 | 0.000018 |
ORF8 | 84 | L84S | tTa | tCa | 3 | 3 | AY.43 | 0.000013 |
ORF8 | 84 | L84S | tTa | tCa | 3 | 3 | B.1.1.265 | 0.009464 |
ORF8 | 84 | L84S | tTa | tCa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF8 | 84 | L84S | tTa | tCa | 3 | 3 | B.1.576 | 0.00272 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | AD.2 | 0.000438 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | AY.117 | 0.000169 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | AY.13 | 0.000322 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | AY.4.2 | 0.000043 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | AY.6 | 0.000082 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | B.1.139 | 0.001466 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | B.1.234 | 0.000264 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | B.1.247 | 0.029851 |
ORF8 | 84 | L84S | tTa | tCa | 2 | 2 | B.1.36.8 | 0.002 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AT.1 | 0.005128 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.27 | 0.000065 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.28 | 0.00189 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.42 | 0.00004 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.48 | 0.000465 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.5.3 | 0.000337 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.65 | 0.000533 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.70 | 0.000209 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.90 | 0.000684 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.1.26 | 0.005236 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.1.4 | 0.002976 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.1.507 | 0.008696 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.113 | 0.015625 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.128 | 0.000635 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.160 | 0.000031 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.160.33 | 0.004425 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.206 | 0.000816 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.221.3 | 0.000833 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.243 | 0.00007 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.319 | 0.003049 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.409 | 0.000781 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.437 | 0.020833 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.497 | 0.000315 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.524 | 0.001406 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.627 | 0.00202 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.4 | 0.002208 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.40 | 0.000364 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | B.6 | 0.00091 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | C.37 | 0.000116 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | P.1.1 | 0.000318 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | P.1.7 | 0.000319 |
ORF8 | 84 | L84S | tTa | tCa | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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