CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 68 | K68X | nonsyn | Aaa | Taa | 405562 | 405457 | 0.999741 | 28095-28097 | |
ORF8 | 68 | K68X | nonsyn | AaA | TaG | 405562 | 104 | 0.000256434 | 28095-28097 | |
ORF8 | 68 | K68X | nonsyn | AAa | TGa | 405562 | 1 | 0.00000246571 | 28095-28097 |
Details of the mutation K68X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 68 | K68X | Aaa | Taa | 405457 | 405562 | All | 0.077548 |
ORF8 | 68 | K68X | AaA | TaG | 104 | 405562 | All | 0.00002 |
ORF8 | 68 | K68X | AAa | TGa | 1 | 405562 | All | 0 |
ORF8 | 68 | K68X | Aaa | Taa | 398742 | 398845 | B.1.1.7 | 0.356963 |
ORF8 | 68 | K68X | AaA | TaG | 103 | 398845 | B.1.1.7 | 0.000092 |
ORF8 | 68 | K68X | Aaa | Taa | 3598 | 3599 | Q.8 | 0.593338 |
ORF8 | 68 | K68X | AaA | TaG | 1 | 3599 | Q.8 | 0.000165 |
ORF8 | 68 | K68X | Aaa | Taa | 869 | 869 | Q.7 | 0.965556 |
ORF8 | 68 | K68X | Aaa | Taa | 569 | 569 | B.1.1 | 0.010322 |
ORF8 | 68 | K68X | Aaa | Taa | 307 | 307 | B.1 | 0.002812 |
ORF8 | 68 | K68X | Aaa | Taa | 176 | 176 | Q.1 | 0.022233 |
ORF8 | 68 | K68X | Aaa | Taa | 132 | 132 | B.1.351 | 0.003924 |
ORF8 | 68 | K68X | Aaa | Taa | 79 | 79 | AY.4 | 0.000123 |
ORF8 | 68 | K68X | Aaa | Taa | 76 | 76 | B.1.375 | 0.062295 |
ORF8 | 68 | K68X | Aaa | Taa | 57 | 57 | B.1.177.73 | 0.032276 |
ORF8 | 68 | K68X | Aaa | Taa | 47 | 47 | Q.6 | 0.311258 |
ORF8 | 68 | K68X | Aaa | Taa | 46 | 46 | P.1 | 0.000725 |
ORF8 | 68 | K68X | Aaa | Taa | 45 | 45 | XA | 1 |
ORF8 | 68 | K68X | Aaa | Taa | 41 | 41 | B.1.617.2 | 0.000154 |
ORF8 | 68 | K68X | Aaa | Taa | 39 | 39 | B.1.576 | 0.035358 |
ORF8 | 68 | K68X | Aaa | Taa | 34 | 34 | B.1.621 | 0.00301 |
ORF8 | 68 | K68X | Aaa | Taa | 30 | 30 | AY.44 | 0.000183 |
ORF8 | 68 | K68X | Aaa | Taa | 29 | 29 | B.1.311 | 0.007963 |
ORF8 | 68 | K68X | Aaa | Taa | 26 | 26 | B | 0.003323 |
ORF8 | 68 | K68X | Aaa | Taa | 23 | 23 | AY.43 | 0.000102 |
ORF8 | 68 | K68X | Aaa | Taa | 20 | 20 | B.1.2 | 0.000176 |
ORF8 | 68 | K68X | Aaa | Taa | 19 | 19 | AY.98.1 | 0.00092 |
ORF8 | 68 | K68X | Aaa | Taa | 19 | 19 | B.1.258 | 0.001264 |
ORF8 | 68 | K68X | Aaa | Taa | 18 | 18 | B.1.1.205 | 0.066914 |
ORF8 | 68 | K68X | Aaa | Taa | 16 | 16 | AY.6 | 0.000658 |
ORF8 | 68 | K68X | Aaa | Taa | 16 | 16 | B.1.526 | 0.000376 |
ORF8 | 68 | K68X | Aaa | Taa | 12 | 12 | B.1.1.214 | 0.000665 |
ORF8 | 68 | K68X | Aaa | Taa | 12 | 12 | B.1.258.17 | 0.001248 |
ORF8 | 68 | K68X | Aaa | Taa | 11 | 11 | B.1.177 | 0.000145 |
ORF8 | 68 | K68X | Aaa | Taa | 11 | 11 | B.1.429 | 0.000259 |
ORF8 | 68 | K68X | Aaa | Taa | 11 | 11 | B.1.596 | 0.000959 |
ORF8 | 68 | K68X | Aaa | Taa | 11 | 11 | B.1.621.1 | 0.005564 |
ORF8 | 68 | K68X | Aaa | Taa | 10 | 10 | B.1.177.7 | 0.001649 |
ORF8 | 68 | K68X | Aaa | Taa | 9 | 9 | B.1.336 | 0.021951 |
ORF8 | 68 | K68X | Aaa | Taa | 8 | 8 | P.1.14 | 0.000382 |
ORF8 | 68 | K68X | Aaa | Taa | 7 | 7 | AY.103 | 0.000043 |
ORF8 | 68 | K68X | Aaa | Taa | 7 | 7 | AY.3 | 0.00007 |
ORF8 | 68 | K68X | Aaa | Taa | 7 | 7 | AY.75 | 0.000392 |
ORF8 | 68 | K68X | Aaa | Taa | 7 | 7 | B.1.1.409 | 0.01983 |
ORF8 | 68 | K68X | Aaa | Taa | 7 | 7 | B.1.1.519 | 0.000278 |
ORF8 | 68 | K68X | Aaa | Taa | 7 | 7 | B.1.221 | 0.000497 |
ORF8 | 68 | K68X | Aaa | Taa | 6 | 6 | B.1.1.225 | 0.043165 |
ORF8 | 68 | K68X | Aaa | Taa | 6 | 6 | B.1.525 | 0.000679 |
ORF8 | 68 | K68X | Aaa | Taa | 6 | 6 | Q.3 | 0.00087 |
ORF8 | 68 | K68X | Aaa | Taa | 6 | 6 | Q.5 | 0.101695 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 5 | 0.222222 | |
ORF8 | 68 | K68X | AAa | TGa | 1 | 5 | 0.055556 | |
ORF8 | 68 | K68X | Aaa | Taa | 5 | 5 | B.1.1.507 | 0.043478 |
ORF8 | 68 | K68X | Aaa | Taa | 5 | 5 | B.1.1.528 | 0.024038 |
ORF8 | 68 | K68X | Aaa | Taa | 5 | 5 | B.1.160 | 0.000156 |
ORF8 | 68 | K68X | Aaa | Taa | 5 | 5 | B.1.620 | 0.00473 |
ORF8 | 68 | K68X | Aaa | Taa | 5 | 5 | C.36.3 | 0.002836 |
ORF8 | 68 | K68X | Aaa | Taa | 5 | 5 | Q.4 | 0.002274 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | AY.23 | 0.000279 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | AY.3.1 | 0.000341 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | AY.5 | 0.000083 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | AY.68 | 0.001095 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | AY.69 | 0.000747 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | B.1.1.161 | 0.014134 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | B.1.1.220 | 0.007435 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | B.1.609 | 0.001918 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | B.1.623 | 0.002146 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | P.1.10 | 0.001078 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | P.1.10.1 | 0.03252 |
ORF8 | 68 | K68X | Aaa | Taa | 4 | 4 | P.1.12 | 0.001936 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | AY.107 | 0.001398 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | AY.25 | 0.000018 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | AY.30 | 0.001187 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | AY.39 | 0.000074 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | AY.84 | 0.001312 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | B.1.1.294 | 0.003797 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | B.1.1.312 | 0.005736 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | B.1.243 | 0.000209 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | P.1.1 | 0.000953 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | P.1.17 | 0.000485 |
ORF8 | 68 | K68X | Aaa | Taa | 3 | 3 | P.1.6 | 0.005837 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | A | 0.000774 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | A.2.5 | 0.000998 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | A.2.5.2 | 0.003145 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | AY.52 | 0.001629 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | AY.65 | 0.001066 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | AY.9.1 | 0.000167 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | AY.9.2 | 0.000073 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.1.141 | 0.004024 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.1.222 | 0.000408 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.1.265 | 0.006309 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.1.299 | 0.02439 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.411 | 0.007407 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.462 | 0.014493 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.497 | 0.00063 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.625 | 0.004706 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | B.1.637 | 0.000146 |
ORF8 | 68 | K68X | Aaa | Taa | 2 | 2 | R.1 | 0.00018 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AT.1 | 0.005128 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.102 | 0.000027 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.110 | 0.000113 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.118 | 0.000063 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.121 | 0.000135 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.27 | 0.000065 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.41 | 0.000294 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.56 | 0.001605 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | AY.95 | 0.000761 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.231 | 0.003096 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.254 | 0.011236 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.34 | 0.013158 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.422 | 0.045455 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.440 | 0.011765 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.55 | 0.012987 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.1.99 | 0.02381 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.214 | 0.003663 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.234 | 0.000132 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.237 | 0.004975 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.258.4 | 0.003448 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.332 | 0.003497 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.36.7 | 0.004 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.361 | 0.001289 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.367 | 0.000792 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.415.1 | 0.007576 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.432 | 0.011236 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.575 | 0.000303 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.619 | 0.000871 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.633 | 0.041667 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.634 | 0.003425 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.1.93 | 0.000934 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | B.6 | 0.00091 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | C.16 | 0.00106 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | C.36 | 0.000911 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | C.37 | 0.000116 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | N.9 | 0.005952 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | P.1.11 | 0.010204 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | P.1.13 | 0.000898 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 68 | K68X | Aaa | Taa | 1 | 1 | P.1.16 | 0.000374 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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