CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = K2del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	2	K2del		del	AAA	---	7660	7660	1	27897-27899

Details of the mutation K2del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	2	K2del	AAA	---	7660	7660	All	0.001465
ORF8	2	K2del	AAA	---	3102	3102	B.1.1.318	0.936029
ORF8	2	K2del	AAA	---	1162	1162	AZ.2	0.954023
ORF8	2	K2del	AAA	---	1153	1153	AZ.1	1
ORF8	2	K2del	AAA	---	614	614	AZ.3	0.933131
ORF8	2	K2del	AAA	---	378	378	B.1.625	0.889412
ORF8	2	K2del	AAA	---	274	274	AZ.4	0.919463
ORF8	2	K2del	AAA	---	231	231	AZ.5	0.810526
ORF8	2	K2del	AAA	---	110	110	AZ.2.1	0.894309
ORF8	2	K2del	AAA	---	93	93	AZ.6	0.781513
ORF8	2	K2del	AAA	---	69	69	AY.4	0.000107
ORF8	2	K2del	AAA	---	65	65	B.1.1.528	0.3125
ORF8	2	K2del	AAA	---	63	63	B.1.1.7	0.000056
ORF8	2	K2del	AAA	---	49	49	B.1.243	0.00341
ORF8	2	K2del	AAA	---	42	42	B.1	0.000385
ORF8	2	K2del	AAA	---	37	37	AY.29	0.000584
ORF8	2	K2del	AAA	---	17	17	B	0.002173
ORF8	2	K2del	AAA	---	14	14	B.1.1	0.000254
ORF8	2	K2del	AAA	---	10	10	B.1.2	0.000088
ORF8	2	K2del	AAA	---	7	7	B.1.1.265	0.022082
ORF8	2	K2del	AAA	---	7	7	B.1.617.2	0.000026
ORF8	2	K2del	AAA	---	6	6	AY.29.1	0.001323
ORF8	2	K2del	AAA	---	6	6	AY.3	0.00006
ORF8	2	K2del	AAA	---	6	6	B.1.1.34	0.078947
ORF8	2	K2del	AAA	---	6	6	B.1.243.2	0.086957
ORF8	2	K2del	AAA	---	6	6	P.1	0.000095
ORF8	2	K2del	AAA	---	5	5	AY.3.1	0.000426
ORF8	2	K2del	AAA	---	5	5	AY.44	0.00003
ORF8	2	K2del	AAA	---	5	5	B.1.1.519	0.000199
ORF8	2	K2del	AAA	---	4	4	AT.1	0.020513
ORF8	2	K2del	AAA	---	4	4	B.1.128	0.002541
ORF8	2	K2del	AAA	---	4	4	B.1.526	0.000094
ORF8	2	K2del	AAA	---	3	3	AY.103	0.000019
ORF8	2	K2del	AAA	---	3	3	AY.37	0.000948
ORF8	2	K2del	AAA	---	3	3	AY.48	0.001395
ORF8	2	K2del	AAA	---	3	3	B.1.1.507	0.026087
ORF8	2	K2del	AAA	---	3	3	B.1.126	0.003827
ORF8	2	K2del	AAA	---	3	3	P.1.15	0.000697
ORF8	2	K2del	AAA	---	2	2		0.111111
ORF8	2	K2del	AAA	---	2	2	A.2.2	0.003378
ORF8	2	K2del	AAA	---	2	2	AD.2	0.000438
ORF8	2	K2del	AAA	---	2	2	AY.118	0.000125
ORF8	2	K2del	AAA	---	2	2	AY.13	0.000322
ORF8	2	K2del	AAA	---	2	2	AY.25	0.000012
ORF8	2	K2del	AAA	---	2	2	AY.39	0.000049
ORF8	2	K2del	AAA	---	2	2	AY.4.2	0.000043
ORF8	2	K2del	AAA	---	2	2	AY.43	0.000009
ORF8	2	K2del	AAA	---	2	2	AY.47	0.000062
ORF8	2	K2del	AAA	---	2	2	B.1.1.214	0.000111
ORF8	2	K2del	AAA	---	2	2	B.1.1.306	0.000877
ORF8	2	K2del	AAA	---	2	2	B.1.157	0.00597
ORF8	2	K2del	AAA	---	2	2	B.1.258	0.000133
ORF8	2	K2del	AAA	---	2	2	B.1.427	0.000101
ORF8	2	K2del	AAA	---	2	2	B.1.429	0.000047
ORF8	2	K2del	AAA	---	2	2	B.1.568	0.002222
ORF8	2	K2del	AAA	---	2	2	B.1.621	0.000177
ORF8	2	K2del	AAA	---	2	2	P.1.12	0.000968
ORF8	2	K2del	AAA	---	1	1	A.2.5	0.000499
ORF8	2	K2del	AAA	---	1	1	A.23	0.010526
ORF8	2	K2del	AAA	---	1	1	A.23.1	0.000704
ORF8	2	K2del	AAA	---	1	1	AY.100	0.000046
ORF8	2	K2del	AAA	---	1	1	AY.107	0.000466
ORF8	2	K2del	AAA	---	1	1	AY.108	0.001103
ORF8	2	K2del	AAA	---	1	1	AY.119	0.000035
ORF8	2	K2del	AAA	---	1	1	AY.120	0.000037
ORF8	2	K2del	AAA	---	1	1	AY.20	0.000039
ORF8	2	K2del	AAA	---	1	1	AY.26	0.000028
ORF8	2	K2del	AAA	---	1	1	AY.36	0.000148
ORF8	2	K2del	AAA	---	1	1	AY.55	0.000917
ORF8	2	K2del	AAA	---	1	1	AY.67	0.000464
ORF8	2	K2del	AAA	---	1	1	AY.74	0.000116
ORF8	2	K2del	AAA	---	1	1	AY.75	0.000056
ORF8	2	K2del	AAA	---	1	1	AY.99	0.001049
ORF8	2	K2del	AAA	---	1	1	AY.99.1	0.001553
ORF8	2	K2del	AAA	---	1	1	B.1.1.216	0.00089
ORF8	2	K2del	AAA	---	1	1	B.1.1.284	0.000107
ORF8	2	K2del	AAA	---	1	1	B.1.1.354	0.004386
ORF8	2	K2del	AAA	---	1	1	B.1.1.37	0.000193
ORF8	2	K2del	AAA	---	1	1	B.1.1.44	0.00241
ORF8	2	K2del	AAA	---	1	1	B.1.110.3	0.000718
ORF8	2	K2del	AAA	---	1	1	B.1.160	0.000031
ORF8	2	K2del	AAA	---	1	1	B.1.177	0.000013
ORF8	2	K2del	AAA	---	1	1	B.1.177.50	0.004695
ORF8	2	K2del	AAA	---	1	1	B.1.177.54	0.000606
ORF8	2	K2del	AAA	---	1	1	B.1.177.63	0.002703
ORF8	2	K2del	AAA	---	1	1	B.1.177.7	0.000165
ORF8	2	K2del	AAA	---	1	1	B.1.177.83	0.001481
ORF8	2	K2del	AAA	---	1	1	B.1.195	0.005025
ORF8	2	K2del	AAA	---	1	1	B.1.214.2	0.0006
ORF8	2	K2del	AAA	---	1	1	B.1.351	0.00003
ORF8	2	K2del	AAA	---	1	1	B.1.36.29	0.000517
ORF8	2	K2del	AAA	---	1	1	B.1.409	0.000781
ORF8	2	K2del	AAA	---	1	1	B.1.470	0.001404
ORF8	2	K2del	AAA	---	1	1	B.1.561	0.000397
ORF8	2	K2del	AAA	---	1	1	B.1.576	0.000907
ORF8	2	K2del	AAA	---	1	1	B.1.582	0.000491
ORF8	2	K2del	AAA	---	1	1	B.1.596	0.000087
ORF8	2	K2del	AAA	---	1	1	B.1.630	0.005236
ORF8	2	K2del	AAA	---	1	1	B.23	0.002924
ORF8	2	K2del	AAA	---	1	1	C.26	0.007353
ORF8	2	K2del	AAA	---	1	1	C.37	0.000116
ORF8	2	K2del	AAA	---	1	1	C.4	0.01
ORF8	2	K2del	AAA	---	1	1	N.6	0.007092
ORF8	2	K2del	AAA	---	1	1	P.1.14	0.000048
ORF8	2	K2del	AAA	---	1	1	P.1.17	0.000162
ORF8	2	K2del	AAA	---	1	1	Q.8	0.000165
ORF8	2	K2del	AAA	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.