CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 17 | H17del | del | CAC | --- | 1966 | 1966 | 1 | 27942-27944 |
Details of the mutation H17del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 17 | H17del | CAC | --- | 1966 | 1966 | All | 0.000376 |
ORF8 | 17 | H17del | CAC | --- | 1308 | 1308 | B.1.623 | 0.701717 |
ORF8 | 17 | H17del | CAC | --- | 99 | 99 | B.1.1.7 | 0.000089 |
ORF8 | 17 | H17del | CAC | --- | 71 | 71 | AY.4 | 0.000111 |
ORF8 | 17 | H17del | CAC | --- | 47 | 47 | B.1.243 | 0.00327 |
ORF8 | 17 | H17del | CAC | --- | 39 | 39 | AY.29 | 0.000615 |
ORF8 | 17 | H17del | CAC | --- | 33 | 33 | B.1.1.222 | 0.006732 |
ORF8 | 17 | H17del | CAC | --- | 25 | 25 | B.1 | 0.000229 |
ORF8 | 17 | H17del | CAC | --- | 25 | 25 | B.1.1 | 0.000454 |
ORF8 | 17 | H17del | CAC | --- | 18 | 18 | B | 0.002301 |
ORF8 | 17 | H17del | CAC | --- | 14 | 14 | AY.48 | 0.006512 |
ORF8 | 17 | H17del | CAC | --- | 13 | 13 | AZ.5 | 0.045614 |
ORF8 | 17 | H17del | CAC | --- | 11 | 11 | AY.46 | 0.001145 |
ORF8 | 17 | H17del | CAC | --- | 11 | 11 | B.1.2 | 0.000097 |
ORF8 | 17 | H17del | CAC | --- | 10 | 10 | B.1.177 | 0.000132 |
ORF8 | 17 | H17del | CAC | --- | 9 | 9 | AD.1 | 0.037037 |
ORF8 | 17 | H17del | CAC | --- | 9 | 9 | AY.29.1 | 0.001985 |
ORF8 | 17 | H17del | CAC | --- | 9 | 9 | B.1.160 | 0.000281 |
ORF8 | 17 | H17del | CAC | --- | 8 | 8 | B.1.1.318 | 0.002414 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | AY.43 | 0.000031 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | AY.44 | 0.000043 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.429 | 0.000165 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.526 | 0.000165 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | P.1 | 0.00011 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | P.1.14 | 0.000335 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | AY.3 | 0.00006 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | B.1.243.2 | 0.086957 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | B.1.596 | 0.000523 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF8 | 17 | H17del | CAC | --- | 5 | 5 | AY.25 | 0.00003 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | 0.222222 | |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | AY.34 | 0.000388 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | AY.98.1 | 0.000194 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | B.1.367 | 0.00317 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | P.1.1 | 0.001271 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | AY.37 | 0.000948 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | B.1.509 | 0.002597 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AD.2 | 0.000438 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.114 | 0.000462 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.67 | 0.000929 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.126 | 0.002551 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.324 | 0.00321 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.40 | 0.000729 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | R.1 | 0.00018 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | A.2 | 0.000662 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AE.4 | 0.043478 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.258.12 | 0.007874 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.306 | 0.005714 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.506 | 0.02381 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | N.3 | 0.005814 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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