CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 8 | G8X | nonsyn | Gga | Tga | 1525 | 1522 | 0.998033 | 27915-27917 | |
ORF8 | 8 | G8X | nonsyn | GGa | TAa | 1525 | 3 | 0.00196721 | 27915-27917 |
Details of the mutation G8X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 8 | G8X | Gga | Tga | 1522 | 1525 | All | 0.000291 |
ORF8 | 8 | G8X | GGa | TAa | 3 | 1525 | All | 0.000001 |
ORF8 | 8 | G8X | Gga | Tga | 204 | 204 | P.1.8 | 0.976077 |
ORF8 | 8 | G8X | Gga | Tga | 189 | 189 | P.1 | 0.002978 |
ORF8 | 8 | G8X | Gga | Tga | 178 | 178 | B.1.596 | 0.015511 |
ORF8 | 8 | G8X | Gga | Tga | 159 | 159 | B.1.1.7 | 0.000142 |
ORF8 | 8 | G8X | Gga | Tga | 99 | 99 | AY.4 | 0.000154 |
ORF8 | 8 | G8X | Gga | Tga | 94 | 94 | B.4.7 | 0.949495 |
ORF8 | 8 | G8X | Gga | Tga | 58 | 58 | AY.43 | 0.000257 |
ORF8 | 8 | G8X | Gga | Tga | 49 | 49 | AY.3 | 0.000487 |
ORF8 | 8 | G8X | Gga | Tga | 46 | 46 | B.1.617.2 | 0.000173 |
ORF8 | 8 | G8X | Gga | Tga | 40 | 40 | AY.25 | 0.000241 |
ORF8 | 8 | G8X | Gga | Tga | 30 | 30 | B.1 | 0.000275 |
ORF8 | 8 | G8X | Gga | Tga | 28 | 28 | AY.44 | 0.00017 |
ORF8 | 8 | G8X | Gga | Tga | 24 | 24 | B.1.160 | 0.000749 |
ORF8 | 8 | G8X | Gga | Tga | 19 | 19 | AY.5.3 | 0.00641 |
ORF8 | 8 | G8X | Gga | Tga | 19 | 19 | B.1.1 | 0.000345 |
ORF8 | 8 | G8X | Gga | Tga | 16 | 16 | B.1.2 | 0.000141 |
ORF8 | 8 | G8X | Gga | Tga | 15 | 15 | AY.103 | 0.000093 |
ORF8 | 8 | G8X | Gga | Tga | 14 | 14 | B.1.221 | 0.000994 |
ORF8 | 8 | G8X | Gga | Tga | 11 | 11 | AY.9.2 | 0.000404 |
ORF8 | 8 | G8X | Gga | Tga | 9 | 9 | AY.39 | 0.000222 |
ORF8 | 8 | G8X | Gga | Tga | 8 | 8 | AY.20 | 0.000311 |
ORF8 | 8 | G8X | Gga | Tga | 8 | 8 | B.1.1.193 | 0.888889 |
ORF8 | 8 | G8X | Gga | Tga | 8 | 8 | B.1.240 | 0.001725 |
ORF8 | 8 | G8X | Gga | Tga | 8 | 8 | B.1.466.2 | 0.00313 |
ORF8 | 8 | G8X | Gga | Tga | 7 | 7 | AY.16 | 0.002658 |
ORF8 | 8 | G8X | Gga | Tga | 7 | 7 | B.1.177 | 0.000092 |
ORF8 | 8 | G8X | Gga | Tga | 5 | 5 | AY.14 | 0.00044 |
ORF8 | 8 | G8X | Gga | Tga | 5 | 5 | AY.33 | 0.000334 |
ORF8 | 8 | G8X | Gga | Tga | 5 | 5 | AY.42 | 0.000201 |
ORF8 | 8 | G8X | Gga | Tga | 5 | 5 | AY.61 | 0.000524 |
ORF8 | 8 | G8X | Gga | Tga | 5 | 5 | AY.99.2 | 0.000461 |
ORF8 | 8 | G8X | Gga | Tga | 5 | 5 | B.1.258 | 0.000333 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | AY.120 | 0.000149 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | AY.5 | 0.000083 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | AY.75 | 0.000224 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | AY.85 | 0.001709 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | B.1.1.318 | 0.001207 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | B.1.1.419 | 0.02963 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | B.1.628 | 0.001409 |
ORF8 | 8 | G8X | Gga | Tga | 4 | 4 | B.4 | 0.00883 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | A.19 | 0.028302 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | AY.119 | 0.000106 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | AY.40 | 0.002893 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | AY.6 | 0.000123 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | AY.98 | 0.000237 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | AY.98.1 | 0.000145 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | B.1.1.1 | 0.00098 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | B.1.1.207 | 0.003546 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | B.1.1.222 | 0.000612 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | B.1.210 | 0.006397 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | B.1.243 | 0.000209 |
ORF8 | 8 | G8X | Gga | Tga | 3 | 3 | Q.7 | 0.003333 |
ORF8 | 8 | G8X | GGa | TAa | 2 | 2 | 0.111111 | |
ORF8 | 8 | G8X | Gga | Tga | 1 | 2 | A.2.2 | 0.001689 |
ORF8 | 8 | G8X | GGa | TAa | 1 | 2 | A.2.2 | 0.001689 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.100 | 0.000092 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.113 | 0.000285 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.23 | 0.000139 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.4.2 | 0.000043 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.67 | 0.000929 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | AY.77 | 0.002255 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.1.216 | 0.001781 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.1.428 | 0.018868 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.1.464 | 0.002946 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.1.519 | 0.000079 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.139 | 0.001466 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.526 | 0.000047 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | B.1.558 | 0.009132 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | P.1.1 | 0.000635 |
ORF8 | 8 | G8X | Gga | Tga | 2 | 2 | P.1.16 | 0.000748 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | A.2 | 0.000662 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.11 | 0.001339 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.116.1 | 0.000311 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.118 | 0.000063 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.120.1 | 0.000321 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.32 | 0.000532 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.39.1 | 0.00004 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.45 | 0.000122 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.46.3 | 0.000934 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.5.4 | 0.000277 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.63 | 0.000387 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.70 | 0.000209 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | AY.87 | 0.000833 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.1.174 | 0.003378 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.1.37 | 0.000193 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.110.3 | 0.000718 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.234 | 0.000132 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.351.5 | 0.0006 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.36.18 | 0.00042 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.369 | 0.000285 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.409 | 0.000781 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.1.595 | 0.000261 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | B.29 | 0.003509 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | C.37 | 0.000116 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | D.2 | 0.000075 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | P.1.13 | 0.000898 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | P.1.14 | 0.000048 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | P.1.7 | 0.000319 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | P.2 | 0.000187 |
ORF8 | 8 | G8X | Gga | Tga | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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