CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = F3del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	3	F3del		del	TTT	---	7248	7248	1	27900-27902

Details of the mutation F3del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	3	F3del	TTT	---	7248	7248	All	0.001386
ORF8	3	F3del	TTT	---	3091	3091	B.1.1.318	0.93271
ORF8	3	F3del	TTT	---	1155	1155	AZ.2	0.948276
ORF8	3	F3del	TTT	---	1152	1152	AZ.1	0.999133
ORF8	3	F3del	TTT	---	614	614	AZ.3	0.933131
ORF8	3	F3del	TTT	---	274	274	AZ.4	0.919463
ORF8	3	F3del	TTT	---	226	226	AZ.5	0.792982
ORF8	3	F3del	TTT	---	110	110	AZ.2.1	0.894309
ORF8	3	F3del	TTT	---	93	93	AZ.6	0.781513
ORF8	3	F3del	TTT	---	81	81	B.1.1.7	0.000073
ORF8	3	F3del	TTT	---	79	79	AY.4	0.000123
ORF8	3	F3del	TTT	---	49	49	B.1.243	0.00341
ORF8	3	F3del	TTT	---	37	37	AY.29	0.000584
ORF8	3	F3del	TTT	---	29	29	B.1.399	0.056093
ORF8	3	F3del	TTT	---	28	28	P.1	0.000441
ORF8	3	F3del	TTT	---	17	17	B	0.002173
ORF8	3	F3del	TTT	---	15	15	B.1.1	0.000272
ORF8	3	F3del	TTT	---	14	14	B.1.1.28	0.004357
ORF8	3	F3del	TTT	---	11	11	B.1	0.000101
ORF8	3	F3del	TTT	---	11	11	B.1.2	0.000097
ORF8	3	F3del	TTT	---	9	9	AY.44	0.000055
ORF8	3	F3del	TTT	---	8	8	B.1.617.2	0.00003
ORF8	3	F3del	TTT	---	7	7	B.1.1.265	0.022082
ORF8	3	F3del	TTT	---	6	6	AY.29.1	0.001323
ORF8	3	F3del	TTT	---	6	6	AY.3	0.00006
ORF8	3	F3del	TTT	---	6	6	B.1.243.2	0.086957
ORF8	3	F3del	TTT	---	6	6	B.1.617.1	0.000774
ORF8	3	F3del	TTT	---	5	5	AY.3.1	0.000426
ORF8	3	F3del	TTT	---	5	5	B.1.1.519	0.000199
ORF8	3	F3del	TTT	---	4	4	AT.1	0.020513
ORF8	3	F3del	TTT	---	4	4	B.1.526	0.000094
ORF8	3	F3del	TTT	---	3	3	AY.103	0.000019
ORF8	3	F3del	TTT	---	3	3	AY.25	0.000018
ORF8	3	F3del	TTT	---	3	3	AY.26	0.000085
ORF8	3	F3del	TTT	---	3	3	AY.37	0.000948
ORF8	3	F3del	TTT	---	3	3	AY.48	0.001395
ORF8	3	F3del	TTT	---	3	3	B.1.126	0.003827
ORF8	3	F3del	TTT	---	2	2		0.111111
ORF8	3	F3del	TTT	---	2	2	A.2.2	0.003378
ORF8	3	F3del	TTT	---	2	2	AD.2	0.000438
ORF8	3	F3del	TTT	---	2	2	AY.118	0.000125
ORF8	3	F3del	TTT	---	2	2	AY.43	0.000009
ORF8	3	F3del	TTT	---	2	2	AY.47	0.000062
ORF8	3	F3del	TTT	---	2	2	AY.70	0.000417
ORF8	3	F3del	TTT	---	2	2	B.1.1.214	0.000111
ORF8	3	F3del	TTT	---	2	2	B.1.1.306	0.000877
ORF8	3	F3del	TTT	---	2	2	B.1.110.3	0.001437
ORF8	3	F3del	TTT	---	2	2	B.1.427	0.000101
ORF8	3	F3del	TTT	---	2	2	B.1.509	0.001732
ORF8	3	F3del	TTT	---	2	2	B.1.568	0.002222
ORF8	3	F3del	TTT	---	2	2	B.1.621	0.000177
ORF8	3	F3del	TTT	---	2	2	B.1.637	0.000146
ORF8	3	F3del	TTT	---	2	2	P.1.12	0.000968
ORF8	3	F3del	TTT	---	2	2	P.1.15	0.000465
ORF8	3	F3del	TTT	---	1	1	A.2.5	0.000499
ORF8	3	F3del	TTT	---	1	1	A.23.1	0.000704
ORF8	3	F3del	TTT	---	1	1	AY.100	0.000046
ORF8	3	F3del	TTT	---	1	1	AY.107	0.000466
ORF8	3	F3del	TTT	---	1	1	AY.108	0.001103
ORF8	3	F3del	TTT	---	1	1	AY.13	0.000161
ORF8	3	F3del	TTT	---	1	1	AY.20	0.000039
ORF8	3	F3del	TTT	---	1	1	AY.36	0.000148
ORF8	3	F3del	TTT	---	1	1	AY.39	0.000025
ORF8	3	F3del	TTT	---	1	1	AY.4.2	0.000022
ORF8	3	F3del	TTT	---	1	1	AY.55	0.000917
ORF8	3	F3del	TTT	---	1	1	AY.67	0.000464
ORF8	3	F3del	TTT	---	1	1	AY.74	0.000116
ORF8	3	F3del	TTT	---	1	1	AY.75	0.000056
ORF8	3	F3del	TTT	---	1	1	AY.99.1	0.001553
ORF8	3	F3del	TTT	---	1	1	B.1.1.216	0.00089
ORF8	3	F3del	TTT	---	1	1	B.1.1.284	0.000107
ORF8	3	F3del	TTT	---	1	1	B.1.1.354	0.004386
ORF8	3	F3del	TTT	---	1	1	B.1.1.37	0.000193
ORF8	3	F3del	TTT	---	1	1	B.1.1.44	0.00241
ORF8	3	F3del	TTT	---	1	1	B.1.157	0.002985
ORF8	3	F3del	TTT	---	1	1	B.1.177	0.000013
ORF8	3	F3del	TTT	---	1	1	B.1.177.54	0.000606
ORF8	3	F3del	TTT	---	1	1	B.1.177.7	0.000165
ORF8	3	F3del	TTT	---	1	1	B.1.177.83	0.001481
ORF8	3	F3del	TTT	---	1	1	B.1.195	0.005025
ORF8	3	F3del	TTT	---	1	1	B.1.258	0.000067
ORF8	3	F3del	TTT	---	1	1	B.1.351	0.00003
ORF8	3	F3del	TTT	---	1	1	B.1.36.29	0.000517
ORF8	3	F3del	TTT	---	1	1	B.1.429	0.000024
ORF8	3	F3del	TTT	---	1	1	B.1.470	0.001404
ORF8	3	F3del	TTT	---	1	1	B.1.525	0.000113
ORF8	3	F3del	TTT	---	1	1	B.1.576	0.000907
ORF8	3	F3del	TTT	---	1	1	B.1.582	0.000491
ORF8	3	F3del	TTT	---	1	1	B.1.596	0.000087
ORF8	3	F3del	TTT	---	1	1	B.1.628	0.000352
ORF8	3	F3del	TTT	---	1	1	B.1.630	0.005236
ORF8	3	F3del	TTT	---	1	1	C.26	0.007353
ORF8	3	F3del	TTT	---	1	1	C.37	0.000116
ORF8	3	F3del	TTT	---	1	1	N.6	0.007092
ORF8	3	F3del	TTT	---	1	1	P.1.14	0.000048
ORF8	3	F3del	TTT	---	1	1	P.1.17	0.000162
ORF8	3	F3del	TTT	---	1	1	Q.8	0.000165
ORF8	3	F3del	TTT	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.