CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 3 | F3del | del | TTT | --- | 7248 | 7248 | 1 | 27900-27902 |
Details of the mutation F3del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 3 | F3del | TTT | --- | 7248 | 7248 | All | 0.001386 |
ORF8 | 3 | F3del | TTT | --- | 3091 | 3091 | B.1.1.318 | 0.93271 |
ORF8 | 3 | F3del | TTT | --- | 1155 | 1155 | AZ.2 | 0.948276 |
ORF8 | 3 | F3del | TTT | --- | 1152 | 1152 | AZ.1 | 0.999133 |
ORF8 | 3 | F3del | TTT | --- | 614 | 614 | AZ.3 | 0.933131 |
ORF8 | 3 | F3del | TTT | --- | 274 | 274 | AZ.4 | 0.919463 |
ORF8 | 3 | F3del | TTT | --- | 226 | 226 | AZ.5 | 0.792982 |
ORF8 | 3 | F3del | TTT | --- | 110 | 110 | AZ.2.1 | 0.894309 |
ORF8 | 3 | F3del | TTT | --- | 93 | 93 | AZ.6 | 0.781513 |
ORF8 | 3 | F3del | TTT | --- | 81 | 81 | B.1.1.7 | 0.000073 |
ORF8 | 3 | F3del | TTT | --- | 79 | 79 | AY.4 | 0.000123 |
ORF8 | 3 | F3del | TTT | --- | 49 | 49 | B.1.243 | 0.00341 |
ORF8 | 3 | F3del | TTT | --- | 37 | 37 | AY.29 | 0.000584 |
ORF8 | 3 | F3del | TTT | --- | 29 | 29 | B.1.399 | 0.056093 |
ORF8 | 3 | F3del | TTT | --- | 28 | 28 | P.1 | 0.000441 |
ORF8 | 3 | F3del | TTT | --- | 17 | 17 | B | 0.002173 |
ORF8 | 3 | F3del | TTT | --- | 15 | 15 | B.1.1 | 0.000272 |
ORF8 | 3 | F3del | TTT | --- | 14 | 14 | B.1.1.28 | 0.004357 |
ORF8 | 3 | F3del | TTT | --- | 11 | 11 | B.1 | 0.000101 |
ORF8 | 3 | F3del | TTT | --- | 11 | 11 | B.1.2 | 0.000097 |
ORF8 | 3 | F3del | TTT | --- | 9 | 9 | AY.44 | 0.000055 |
ORF8 | 3 | F3del | TTT | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF8 | 3 | F3del | TTT | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 3 | F3del | TTT | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF8 | 3 | F3del | TTT | --- | 6 | 6 | AY.3 | 0.00006 |
ORF8 | 3 | F3del | TTT | --- | 6 | 6 | B.1.243.2 | 0.086957 |
ORF8 | 3 | F3del | TTT | --- | 6 | 6 | B.1.617.1 | 0.000774 |
ORF8 | 3 | F3del | TTT | --- | 5 | 5 | AY.3.1 | 0.000426 |
ORF8 | 3 | F3del | TTT | --- | 5 | 5 | B.1.1.519 | 0.000199 |
ORF8 | 3 | F3del | TTT | --- | 4 | 4 | AT.1 | 0.020513 |
ORF8 | 3 | F3del | TTT | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF8 | 3 | F3del | TTT | --- | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 3 | F3del | TTT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF8 | 3 | F3del | TTT | --- | 3 | 3 | AY.26 | 0.000085 |
ORF8 | 3 | F3del | TTT | --- | 3 | 3 | AY.37 | 0.000948 |
ORF8 | 3 | F3del | TTT | --- | 3 | 3 | AY.48 | 0.001395 |
ORF8 | 3 | F3del | TTT | --- | 3 | 3 | B.1.126 | 0.003827 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | 0.111111 | |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | AD.2 | 0.000438 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | AY.70 | 0.000417 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.110.3 | 0.001437 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.509 | 0.001732 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.568 | 0.002222 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | B.1.637 | 0.000146 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF8 | 3 | F3del | TTT | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.13 | 0.000161 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | C.37 | 0.000116 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 3 | F3del | TTT | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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