CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = F3L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF83F3LnonsynTttCtt313230890.98627127900-27902
ORF83F3LnonsynttTttG3132240.0076628427900-27902
ORF83F3LnonsynttTttA3132120.0038314227900-27902
ORF83F3LnonsynTtTCtA313230.00095785427900-27902
ORF83F3LnonsynTtTCtG313220.0006385727900-27902
ORF83F3LnonsynTtTCtC313220.0006385727900-27902

Details of the mutation F3L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF83F3LTttCtt30893132All0.000591
ORF83F3LttTttG243132All0.000005
ORF83F3LttTttA123132All0.000002
ORF83F3LTtTCtA33132All0.000001
ORF83F3LTtTCtG23132All0
ORF83F3LTtTCtC23132All0
ORF83F3LTttCtt13011319AY.40.002025
ORF83F3LttTttG181319AY.40.000028
ORF83F3LTttCtt583583B.1.1.4330.830484
ORF83F3LTttCtt265268B.1.1.70.000237
ORF83F3LttTttA3268B.1.1.70.000003
ORF83F3LTttCtt148149B.1.1600.004616
ORF83F3LttTttA1149B.1.1600.000031
ORF83F3LTttCtt7979AY.4.20.001713
ORF83F3LTttCtt7979AY.46.60.005704
ORF83F3LTttCtt5051AY.250.000301
ORF83F3LttTttG151AY.250.000006
ORF83F3LTttCtt5151AY.440.00031
ORF83F3LTttCtt3637B.1.617.20.000136
ORF83F3LTtTCtA137B.1.617.20.000004
ORF83F3LTttCtt3535AY.1030.000217
ORF83F3LTttCtt3333AY.39.10.001307
ORF83F3LTttCtt2929B.1.1180.194631
ORF83F3LTttCtt2424AY.1020.000636
ORF83F3LTttCtt2222B.1.6370.001608
ORF83F3LTttCtt2121AY.30.000209
ORF83F3LTttCtt1919AY.1200.000706
ORF83F3LTttCtt1617B.10.000147
ORF83F3LttTttA117B.10.000009
ORF83F3LTttCtt1616B.1.1.2220.003264
ORF83F3LTttCtt1616C.291
ORF83F3LTttCtt1414AY.430.000062
ORF83F3LTttCtt1313AY.1000.000598
ORF83F3LttTttA2120.111111
ORF83F3LTtTCtC2120.111111
ORF83F3LTtTCtA2120.111111
ORF83F3LTtTCtG2120.111111
ORF83F3LttTttG2120.111111
ORF83F3LTttCtt2120.111111
ORF83F3LTttCtt1212AY.1170.001014
ORF83F3LTttCtt1212B.1.10.000218
ORF83F3LTttCtt1011AY.290.000158
ORF83F3LttTttG111AY.290.000016
ORF83F3LTttCtt89B.1.20.00007
ORF83F3LttTttA19B.1.20.000009
ORF83F3LTttCtt89P.10.000126
ORF83F3LttTttG19P.10.000016
ORF83F3LTttCtt88AY.390.000198
ORF83F3LTttCtt88AY.5.40.002214
ORF83F3LTttCtt57AY.260.000142
ORF83F3LttTttA27AY.260.000057
ORF83F3LTttCtt77B.1.177.460.006428
ORF83F3LTttCtt77B.1.3510.000208
ORF83F3LTttCtt77P.1.140.000335
ORF83F3LTttCtt66AY.140.000528
ORF83F3LTttCtt66AY.200.000233
ORF83F3LTttCtt56AY.9.20.000184
ORF83F3LttTttG16AY.9.20.000037
ORF83F3LTttCtt55B.1.1.1760.002197
ORF83F3LTttCtt55B.1.1.2940.006329
ORF83F3LTttCtt55B.1.1.330.002104
ORF83F3LTttCtt44AY.330.000267
ORF83F3LTttCtt44B.1.1770.000053
ORF83F3LTttCtt44B.1.6120.01061
ORF83F3LTttCtt33AY.1190.000106
ORF83F3LTttCtt33AY.230.000209
ORF83F3LTttCtt33AY.3.10.000256
ORF83F3LTttCtt33AY.46.40.000494
ORF83F3LTttCtt33B.1.1.5190.000119
ORF83F3LTttCtt33B.1.177.120.000455
ORF83F3LTttCtt33B.1.2360.00616
ORF83F3LTttCtt33B.1.5880.00273
ORF83F3LTttCtt33B.1.5960.000261
ORF83F3LTttCtt33Q.20.00184
ORF83F3LTttCtt22AY.4.50.000215
ORF83F3LTttCtt22AY.420.00008
ORF83F3LTttCtt22AY.710.00095
ORF83F3LTttCtt22AY.90.000135
ORF83F3LTttCtt22AY.920.000575
ORF83F3LTttCtt22AY.99.20.000184
ORF83F3LTttCtt22B.1.177.330.003289
ORF83F3LTttCtt22B.1.4330.00639
ORF83F3LTttCtt22B.1.6210.000177
ORF83F3LTttCtt22B.120.012821
ORF83F3LTttCtt22C.370.000232
ORF83F3LTttCtt11A.2.50.000499
ORF83F3LTttCtt11AM.40.003571
ORF83F3LTttCtt11AY.1100.000113
ORF83F3LTttCtt11AY.1160.000287
ORF83F3LTttCtt11AY.1180.000063
ORF83F3LTttCtt11AY.120.000316
ORF83F3LTttCtt11AY.340.000097
ORF83F3LTttCtt11AY.450.000122
ORF83F3LTttCtt11AY.470.000031
ORF83F3LTttCtt11AY.50.000021
ORF83F3LTttCtt11AY.570.000656
ORF83F3LTttCtt11AY.60.000041
ORF83F3LTttCtt11AY.600.000938
ORF83F3LTttCtt11AY.610.000105
ORF83F3LTttCtt11AY.640.000595
ORF83F3LTttCtt11AY.7.10.000113
ORF83F3LTttCtt11AY.740.000116
ORF83F3LTttCtt11AY.870.000833
ORF83F3LTttCtt11AY.980.000079
ORF83F3LttTttA11B0.000128
ORF83F3LTttCtt11B.1.1.2910.000742
ORF83F3LTttCtt11B.1.1.4340.000349
ORF83F3LTttCtt11B.1.1.450.014085
ORF83F3LTttCtt11B.1.1.670.004566
ORF83F3LTttCtt11B.1.1.890.006061
ORF83F3LTttCtt11B.1.177.230.003236
ORF83F3LTttCtt11B.1.177.730.000566
ORF83F3LTttCtt11B.1.214.20.0006
ORF83F3LTttCtt11B.1.2340.000132
ORF83F3LTttCtt11B.1.2390.001221
ORF83F3LTttCtt11B.1.2430.00007
ORF83F3LTttCtt11B.1.2580.000067
ORF83F3LTttCtt11B.1.3800.006623
ORF83F3LTttCtt11B.1.3990.001934
ORF83F3LTttCtt11B.1.4270.00005
ORF83F3LTttCtt11B.1.4290.000024
ORF83F3LTttCtt11B.1.4590.004082
ORF83F3LTttCtt11B.1.4700.001404
ORF83F3LTttCtt11B.1.5250.000113
ORF83F3LTttCtt11B.1.5260.000024
ORF83F3LTttCtt11B.1.5400.009709
ORF83F3LTttCtt11B.1.5740.002151
ORF83F3LttTttA11B.1.575.20.004808
ORF83F3LTttCtt11B.1.5770.000687
ORF83F3LTttCtt11B.1.5800.004065
ORF83F3LTttCtt11B.1.5950.000261
ORF83F3LTttCtt11B.1.617.10.000129
ORF83F3LTttCtt11B.1.621.10.000506
ORF83F3LTttCtt11D.30.005917
ORF83F3LTttCtt11P.1.150.000232
ORF83F3LTttCtt11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.