CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 120 | F120del2 | del | TTC | --N | 581 | 451 | 0.776248 | 28251-28253 | |
ORF8 | 120 | F120del2 | del | tTC | t-- | 581 | 72 | 0.123924 | 28251-28253 | |
ORF8 | 120 | F120del2 | del | TTC | --T | 581 | 26 | 0.0447504 | 28251-28253 | |
ORF8 | 120 | F120del2 | del | TTc | --c | 581 | 21 | 0.0361446 | 28251-28253 | |
ORF8 | 120 | F120del2 | del | TTC | --A | 581 | 11 | 0.0189329 | 28251-28253 |
Details of the mutation F120del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 120 | F120del2 | TTC | --N | 451 | 581 | All | 0.000086 |
ORF8 | 120 | F120del2 | tTC | t-- | 72 | 581 | All | 0.000014 |
ORF8 | 120 | F120del2 | TTC | --T | 26 | 581 | All | 0.000005 |
ORF8 | 120 | F120del2 | TTc | --c | 21 | 581 | All | 0.000004 |
ORF8 | 120 | F120del2 | TTC | --A | 11 | 581 | All | 0.000002 |
ORF8 | 120 | F120del2 | TTC | --N | 139 | 142 | AY.43 | 0.000616 |
ORF8 | 120 | F120del2 | tTC | t-- | 2 | 142 | AY.43 | 0.000009 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 142 | AY.43 | 0.000004 |
ORF8 | 120 | F120del2 | TTC | --N | 38 | 38 | AY.12 | 0.01201 |
ORF8 | 120 | F120del2 | tTC | t-- | 28 | 38 | B.1.1.7 | 0.000025 |
ORF8 | 120 | F120del2 | TTc | --c | 9 | 38 | B.1.1.7 | 0.000008 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 38 | B.1.1.7 | 0.000001 |
ORF8 | 120 | F120del2 | TTC | --N | 28 | 38 | B.1.617.2 | 0.000105 |
ORF8 | 120 | F120del2 | TTC | --A | 6 | 38 | B.1.617.2 | 0.000023 |
ORF8 | 120 | F120del2 | TTC | --T | 3 | 38 | B.1.617.2 | 0.000011 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 38 | B.1.617.2 | 0.000004 |
ORF8 | 120 | F120del2 | TTC | --N | 31 | 36 | AY.4 | 0.000048 |
ORF8 | 120 | F120del2 | TTC | --T | 2 | 36 | AY.4 | 0.000003 |
ORF8 | 120 | F120del2 | tTC | t-- | 2 | 36 | AY.4 | 0.000003 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 36 | AY.4 | 0.000002 |
ORF8 | 120 | F120del2 | TTC | --N | 20 | 23 | AY.102 | 0.00053 |
ORF8 | 120 | F120del2 | TTC | --T | 3 | 23 | AY.102 | 0.00008 |
ORF8 | 120 | F120del2 | TTC | --N | 17 | 17 | AY.5 | 0.000351 |
ORF8 | 120 | F120del2 | TTC | --N | 11 | 15 | AY.44 | 0.000067 |
ORF8 | 120 | F120del2 | TTC | --T | 3 | 15 | AY.44 | 0.000018 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 15 | AY.44 | 0.000006 |
ORF8 | 120 | F120del2 | TTC | --N | 9 | 15 | AY.9.2 | 0.000331 |
ORF8 | 120 | F120del2 | tTC | t-- | 6 | 15 | AY.9.2 | 0.00022 |
ORF8 | 120 | F120del2 | TTC | --N | 10 | 14 | AY.103 | 0.000062 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 14 | AY.103 | 0.000006 |
ORF8 | 120 | F120del2 | TTC | --A | 1 | 14 | AY.103 | 0.000006 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 14 | AY.103 | 0.000006 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 14 | AY.103 | 0.000006 |
ORF8 | 120 | F120del2 | TTC | --N | 13 | 14 | AY.121 | 0.001759 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 14 | AY.121 | 0.000135 |
ORF8 | 120 | F120del2 | TTC | --N | 13 | 13 | AY.46 | 0.001353 |
ORF8 | 120 | F120del2 | TTC | --N | 10 | 10 | AY.39.1 | 0.000396 |
ORF8 | 120 | F120del2 | TTC | --N | 5 | 9 | AY.25 | 0.00003 |
ORF8 | 120 | F120del2 | TTC | --T | 2 | 9 | AY.25 | 0.000012 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 9 | AY.25 | 0.000006 |
ORF8 | 120 | F120del2 | TTC | --A | 1 | 9 | AY.25 | 0.000006 |
ORF8 | 120 | F120del2 | TTC | --N | 8 | 8 | AY.65 | 0.004264 |
ORF8 | 120 | F120del2 | tTC | t-- | 8 | 8 | B.1.258.17 | 0.000832 |
ORF8 | 120 | F120del2 | TTC | --N | 7 | 7 | AY.7.1 | 0.000789 |
ORF8 | 120 | F120del2 | TTC | --N | 5 | 6 | AY.119 | 0.000177 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 6 | AY.119 | 0.000035 |
ORF8 | 120 | F120del2 | TTC | --N | 6 | 6 | AY.39 | 0.000148 |
ORF8 | 120 | F120del2 | TTC | --N | 4 | 6 | AY.61 | 0.000419 |
ORF8 | 120 | F120del2 | TTC | --T | 2 | 6 | AY.61 | 0.00021 |
ORF8 | 120 | F120del2 | TTC | --N | 5 | 5 | AY.120 | 0.000186 |
ORF8 | 120 | F120del2 | tTC | t-- | 5 | 5 | C.36.3 | 0.002836 |
ORF8 | 120 | F120del2 | TTC | --N | 3 | 4 | AY.26 | 0.000085 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 4 | AY.26 | 0.000028 |
ORF8 | 120 | F120del2 | TTC | --N | 3 | 4 | AY.33 | 0.0002 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 4 | AY.33 | 0.000067 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 4 | AY.47 | 0.000062 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 4 | AY.47 | 0.000031 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 4 | AY.47 | 0.000031 |
ORF8 | 120 | F120del2 | TTC | --N | 4 | 4 | AY.6 | 0.000165 |
ORF8 | 120 | F120del2 | TTc | --c | 4 | 4 | B.1.375 | 0.003279 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 3 | AY.110 | 0.000225 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 3 | AY.110 | 0.000113 |
ORF8 | 120 | F120del2 | TTC | --N | 3 | 3 | AY.3 | 0.00003 |
ORF8 | 120 | F120del2 | TTC | --N | 3 | 3 | AY.42 | 0.000121 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 3 | B.1 | 0.000018 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 3 | B.1 | 0.000009 |
ORF8 | 120 | F120del2 | tTC | t-- | 3 | 3 | B.1.1.168 | 0.078947 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 2 | AY.1 | 0.000396 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 2 | AY.1 | 0.000396 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 2 | AY.100 | 0.000046 |
ORF8 | 120 | F120del2 | TTC | --A | 1 | 2 | AY.100 | 0.000046 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.106 | 0.00067 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.117 | 0.000169 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.45 | 0.000243 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 2 | AY.53 | 0.000288 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 2 | AY.53 | 0.000288 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.60 | 0.001876 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 2 | AY.75 | 0.000056 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 2 | AY.75 | 0.000056 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 2 | AY.75.1 | 0.00018 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 2 | AY.75.1 | 0.00018 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.82 | 0.002714 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.9 | 0.000135 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.9.1 | 0.000167 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 2 | AY.92 | 0.000287 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 2 | AY.92 | 0.000287 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.98 | 0.000158 |
ORF8 | 120 | F120del2 | TTC | --N | 2 | 2 | AY.98.1 | 0.000097 |
ORF8 | 120 | F120del2 | tTC | t-- | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 120 | F120del2 | tTC | t-- | 2 | 2 | B.1.351 | 0.000059 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.10 | 0.00053 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.107 | 0.000466 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.111 | 0.000183 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.113 | 0.000142 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 1 | AY.116 | 0.000287 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 1 | AY.118 | 0.000063 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.13 | 0.000161 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.16.1 | 0.00047 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.2 | 0.000356 |
ORF8 | 120 | F120del2 | TTC | --A | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 120 | F120del2 | TTC | --A | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.34.1 | 0.00051 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 1 | AY.35 | 0.000233 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.38 | 0.000499 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.5.3 | 0.000337 |
ORF8 | 120 | F120del2 | TTc | --c | 1 | 1 | AY.5.4 | 0.000277 |
ORF8 | 120 | F120del2 | TTC | --T | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.58 | 0.000907 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.7 | 0.000196 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.71 | 0.000475 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.73 | 0.000665 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.85 | 0.000427 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.87 | 0.000833 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | AY.91 | 0.00073 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 1 | AY.95 | 0.000761 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 1 | B.1.188 | 0.016667 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 1 | B.1.36.21 | 0.00216 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 120 | F120del2 | TTC | --N | 1 | 1 | B.1.621.1 | 0.000506 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 1 | B.1.637 | 0.000073 |
ORF8 | 120 | F120del2 | tTC | t-- | 1 | 1 | P.1.1 | 0.000318 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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