CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 59 | E59del | del | GAA | --- | 1232 | 1232 | 1 | 28068-28070 |
Details of the mutation E59del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 59 | E59del | GAA | --- | 1232 | 1232 | All | 0.000236 |
ORF8 | 59 | E59del | GAA | --- | 372 | 372 | B.1.1.7 | 0.000333 |
ORF8 | 59 | E59del | GAA | --- | 86 | 86 | AY.44 | 0.000523 |
ORF8 | 59 | E59del | GAA | --- | 68 | 68 | AY.4 | 0.000106 |
ORF8 | 59 | E59del | GAA | --- | 66 | 66 | AY.103 | 0.00041 |
ORF8 | 59 | E59del | GAA | --- | 58 | 58 | B.1.1.294 | 0.073418 |
ORF8 | 59 | E59del | GAA | --- | 45 | 45 | B.1.351 | 0.001338 |
ORF8 | 59 | E59del | GAA | --- | 38 | 38 | AY.29 | 0.000599 |
ORF8 | 59 | E59del | GAA | --- | 37 | 37 | B.1.1 | 0.000671 |
ORF8 | 59 | E59del | GAA | --- | 34 | 34 | B.1.1.222 | 0.006936 |
ORF8 | 59 | E59del | GAA | --- | 34 | 34 | B.1.243 | 0.002366 |
ORF8 | 59 | E59del | GAA | --- | 30 | 30 | B.1.160 | 0.000936 |
ORF8 | 59 | E59del | GAA | --- | 21 | 21 | P.1 | 0.000331 |
ORF8 | 59 | E59del | GAA | --- | 19 | 19 | B | 0.002428 |
ORF8 | 59 | E59del | GAA | --- | 18 | 18 | AY.118 | 0.001128 |
ORF8 | 59 | E59del | GAA | --- | 17 | 17 | AY.3 | 0.000169 |
ORF8 | 59 | E59del | GAA | --- | 17 | 17 | B.1.617.2 | 0.000064 |
ORF8 | 59 | E59del | GAA | --- | 12 | 12 | B.1.2 | 0.000106 |
ORF8 | 59 | E59del | GAA | --- | 11 | 11 | B.1.1.318 | 0.003319 |
ORF8 | 59 | E59del | GAA | --- | 9 | 9 | AY.113 | 0.001282 |
ORF8 | 59 | E59del | GAA | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF8 | 59 | E59del | GAA | --- | 8 | 8 | B.1.1.284 | 0.000859 |
ORF8 | 59 | E59del | GAA | --- | 7 | 7 | AY.119 | 0.000247 |
ORF8 | 59 | E59del | GAA | --- | 7 | 7 | AY.25 | 0.000042 |
ORF8 | 59 | E59del | GAA | --- | 7 | 7 | B.1 | 0.000064 |
ORF8 | 59 | E59del | GAA | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 59 | E59del | GAA | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 59 | E59del | GAA | --- | 7 | 7 | B.1.628 | 0.002467 |
ORF8 | 59 | E59del | GAA | --- | 7 | 7 | P.1.14 | 0.000335 |
ORF8 | 59 | E59del | GAA | --- | 6 | 6 | 0.333333 | |
ORF8 | 59 | E59del | GAA | --- | 6 | 6 | B.1.1.519 | 0.000238 |
ORF8 | 59 | E59del | GAA | --- | 6 | 6 | B.1.243.2 | 0.086957 |
ORF8 | 59 | E59del | GAA | --- | 6 | 6 | P.1.17 | 0.000971 |
ORF8 | 59 | E59del | GAA | --- | 5 | 5 | AY.29.1 | 0.001103 |
ORF8 | 59 | E59del | GAA | --- | 5 | 5 | AY.39 | 0.000124 |
ORF8 | 59 | E59del | GAA | --- | 5 | 5 | B.1.240 | 0.001078 |
ORF8 | 59 | E59del | GAA | --- | 5 | 5 | C.37 | 0.00058 |
ORF8 | 59 | E59del | GAA | --- | 5 | 5 | P.1.1 | 0.001588 |
ORF8 | 59 | E59del | GAA | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF8 | 59 | E59del | GAA | --- | 4 | 4 | AY.7.2 | 0.002237 |
ORF8 | 59 | E59del | GAA | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF8 | 59 | E59del | GAA | --- | 4 | 4 | B.1.177.80 | 0.007648 |
ORF8 | 59 | E59del | GAA | --- | 4 | 4 | B.1.258 | 0.000266 |
ORF8 | 59 | E59del | GAA | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF8 | 59 | E59del | GAA | --- | 3 | 3 | AY.26 | 0.000085 |
ORF8 | 59 | E59del | GAA | --- | 3 | 3 | B.1.22 | 0.003953 |
ORF8 | 59 | E59del | GAA | --- | 3 | 3 | B.1.438.1 | 0.000322 |
ORF8 | 59 | E59del | GAA | --- | 3 | 3 | B.1.509 | 0.002597 |
ORF8 | 59 | E59del | GAA | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF8 | 59 | E59del | GAA | --- | 3 | 3 | Q.8 | 0.000495 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.23 | 0.000139 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.48 | 0.00093 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.84 | 0.000875 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | B.1.210 | 0.004264 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | B.1.258.17 | 0.000208 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | B.40 | 0.000729 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF8 | 59 | E59del | GAA | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AE.4 | 0.043478 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.32 | 0.000532 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.4.4 | 0.000409 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.69 | 0.000187 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.269 | 0.001353 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.297 | 0.002237 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.126 | 0.001276 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.258.12 | 0.007874 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.35 | 0.008475 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.540 | 0.009709 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.549 | 0.007194 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.597 | 0.00463 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | B.34 | 0.013699 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | C.36 | 0.000911 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | M.3 | 0.076923 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | P.1.8 | 0.004785 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | Q.3 | 0.000145 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | Q.4 | 0.000455 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | Q.7 | 0.001111 |
ORF8 | 59 | E59del | GAA | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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