CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 19 | E19X | nonsyn | Gaa | Taa | 4055 | 4054 | 0.999753 | 27948-27950 | |
ORF8 | 19 | E19X | nonsyn | GaA | TaG | 4055 | 1 | 0.000246609 | 27948-27950 |
Details of the mutation E19X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 19 | E19X | Gaa | Taa | 4054 | 4055 | All | 0.000775 |
ORF8 | 19 | E19X | GaA | TaG | 1 | 4055 | All | 0 |
ORF8 | 19 | E19X | Gaa | Taa | 1617 | 1617 | AY.48 | 0.752093 |
ORF8 | 19 | E19X | Gaa | Taa | 501 | 501 | B.1.1.7 | 0.000449 |
ORF8 | 19 | E19X | Gaa | Taa | 227 | 227 | Q.3 | 0.032922 |
ORF8 | 19 | E19X | Gaa | Taa | 199 | 199 | P.1.7 | 0.063538 |
ORF8 | 19 | E19X | Gaa | Taa | 134 | 134 | AY.4 | 0.000209 |
ORF8 | 19 | E19X | Gaa | Taa | 119 | 119 | B.1.617.2 | 0.000448 |
ORF8 | 19 | E19X | Gaa | Taa | 85 | 85 | AY.103 | 0.000528 |
ORF8 | 19 | E19X | Gaa | Taa | 64 | 64 | AY.25 | 0.000385 |
ORF8 | 19 | E19X | Gaa | Taa | 60 | 60 | AY.3 | 0.000597 |
ORF8 | 19 | E19X | Gaa | Taa | 49 | 49 | B.1.427 | 0.002474 |
ORF8 | 19 | E19X | Gaa | Taa | 43 | 43 | AY.43 | 0.000191 |
ORF8 | 19 | E19X | Gaa | Taa | 42 | 42 | B.1.536 | 1 |
ORF8 | 19 | E19X | Gaa | Taa | 38 | 38 | B.1.1 | 0.000689 |
ORF8 | 19 | E19X | Gaa | Taa | 38 | 38 | B.1.526 | 0.000893 |
ORF8 | 19 | E19X | Gaa | Taa | 35 | 35 | AY.9 | 0.002366 |
ORF8 | 19 | E19X | Gaa | Taa | 35 | 35 | B.1 | 0.000321 |
ORF8 | 19 | E19X | Gaa | Taa | 33 | 33 | AY.98 | 0.002607 |
ORF8 | 19 | E19X | Gaa | Taa | 32 | 32 | AY.9.2 | 0.001175 |
ORF8 | 19 | E19X | Gaa | Taa | 27 | 27 | B.1.177 | 0.000356 |
ORF8 | 19 | E19X | Gaa | Taa | 27 | 27 | B.1.243 | 0.001879 |
ORF8 | 19 | E19X | Gaa | Taa | 24 | 24 | B.1.2 | 0.000211 |
ORF8 | 19 | E19X | Gaa | Taa | 22 | 22 | AY.3.1 | 0.001876 |
ORF8 | 19 | E19X | Gaa | Taa | 22 | 22 | AY.37 | 0.006953 |
ORF8 | 19 | E19X | Gaa | Taa | 21 | 21 | AY.44 | 0.000128 |
ORF8 | 19 | E19X | Gaa | Taa | 20 | 20 | AY.117 | 0.00169 |
ORF8 | 19 | E19X | Gaa | Taa | 20 | 20 | P.1 | 0.000315 |
ORF8 | 19 | E19X | Gaa | Taa | 19 | 19 | B.1.1.519 | 0.000755 |
ORF8 | 19 | E19X | Gaa | Taa | 19 | 19 | B.1.36 | 0.002772 |
ORF8 | 19 | E19X | Gaa | Taa | 18 | 18 | B.1.177.52 | 0.031634 |
ORF8 | 19 | E19X | Gaa | Taa | 17 | 17 | B.1.597 | 0.078704 |
ORF8 | 19 | E19X | Gaa | Taa | 16 | 16 | B.1.351 | 0.000476 |
ORF8 | 19 | E19X | Gaa | Taa | 14 | 14 | AY.23 | 0.000976 |
ORF8 | 19 | E19X | Gaa | Taa | 14 | 14 | AY.26 | 0.000396 |
ORF8 | 19 | E19X | Gaa | Taa | 13 | 13 | B.1.1.306 | 0.005699 |
ORF8 | 19 | E19X | Gaa | Taa | 13 | 13 | B.1.258 | 0.000865 |
ORF8 | 19 | E19X | Gaa | Taa | 13 | 13 | B.1.429 | 0.000306 |
ORF8 | 19 | E19X | Gaa | Taa | 12 | 12 | AY.39 | 0.000297 |
ORF8 | 19 | E19X | Gaa | Taa | 12 | 12 | B.1.36.1 | 0.013683 |
ORF8 | 19 | E19X | Gaa | Taa | 11 | 11 | AY.98.1 | 0.000533 |
ORF8 | 19 | E19X | Gaa | Taa | 10 | 10 | AY.27 | 0.000647 |
ORF8 | 19 | E19X | Gaa | Taa | 10 | 10 | B.1.1.284 | 0.001074 |
ORF8 | 19 | E19X | Gaa | Taa | 10 | 10 | B.1.400 | 0.00429 |
ORF8 | 19 | E19X | Gaa | Taa | 9 | 9 | AY.35 | 0.002097 |
ORF8 | 19 | E19X | Gaa | Taa | 9 | 9 | AY.5 | 0.000186 |
ORF8 | 19 | E19X | Gaa | Taa | 9 | 9 | AY.75 | 0.000504 |
ORF8 | 19 | E19X | Gaa | Taa | 8 | 8 | AY.4.4 | 0.003273 |
ORF8 | 19 | E19X | Gaa | Taa | 8 | 8 | AY.5.3 | 0.002699 |
ORF8 | 19 | E19X | Gaa | Taa | 8 | 8 | AY.59 | 0.004237 |
ORF8 | 19 | E19X | Gaa | Taa | 8 | 8 | B.1.160 | 0.00025 |
ORF8 | 19 | E19X | Gaa | Taa | 7 | 7 | AY.119 | 0.000247 |
ORF8 | 19 | E19X | Gaa | Taa | 7 | 7 | B.1.1.294 | 0.008861 |
ORF8 | 19 | E19X | Gaa | Taa | 7 | 7 | B.1.1.318 | 0.002112 |
ORF8 | 19 | E19X | Gaa | Taa | 7 | 7 | B.1.177.35 | 0.004838 |
ORF8 | 19 | E19X | Gaa | Taa | 6 | 6 | AY.109 | 0.004438 |
ORF8 | 19 | E19X | Gaa | Taa | 6 | 6 | AY.36 | 0.000889 |
ORF8 | 19 | E19X | Gaa | Taa | 6 | 6 | AY.47 | 0.000187 |
ORF8 | 19 | E19X | Gaa | Taa | 6 | 6 | B.1.349 | 0.004289 |
ORF8 | 19 | E19X | Gaa | Taa | 6 | 6 | B.1.466.2 | 0.002347 |
ORF8 | 19 | E19X | Gaa | Taa | 5 | 5 | AY.6 | 0.000206 |
ORF8 | 19 | E19X | Gaa | Taa | 5 | 5 | B.1.240 | 0.001078 |
ORF8 | 19 | E19X | Gaa | Taa | 5 | 5 | B.1.466.1 | 0.035971 |
ORF8 | 19 | E19X | Gaa | Taa | 5 | 5 | B.1.637 | 0.000365 |
ORF8 | 19 | E19X | Gaa | Taa | 4 | 4 | AY.20 | 0.000155 |
ORF8 | 19 | E19X | Gaa | Taa | 4 | 4 | AY.62 | 0.001743 |
ORF8 | 19 | E19X | Gaa | Taa | 4 | 4 | B.1.1.214 | 0.000222 |
ORF8 | 19 | E19X | Gaa | Taa | 4 | 4 | B.1.1.25 | 0.002274 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | AY.118 | 0.000188 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | AY.33 | 0.0002 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | AY.45 | 0.000365 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | AY.75.1 | 0.000541 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | B | 0.000383 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | B.1.1.216 | 0.002671 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | B.1.1.277 | 0.002276 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | B.1.177.44 | 0.001557 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | B.1.221 | 0.000213 |
ORF8 | 19 | E19X | Gaa | Taa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AE.1 | 0.022727 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AU.1 | 0.002532 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.106 | 0.00067 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.107 | 0.000932 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.113 | 0.000285 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.120.1 | 0.000642 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.38 | 0.000999 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.4.5 | 0.000215 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.42 | 0.00008 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.46.6 | 0.000144 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.54 | 0.000191 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | B.1.1.348 | 0.001592 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | B.1.1.419 | 0.014815 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | B.1.1.434 | 0.000697 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | B.1.425 | 0.005988 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | C.35 | 0.001548 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | P.1.14 | 0.000096 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | Q.1 | 0.000253 |
ORF8 | 19 | E19X | Gaa | Taa | 2 | 2 | Q.4 | 0.00091 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | A.3 | 0.002096 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AD.2 | 0.000219 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.101 | 0.00049 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.111 | 0.000183 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.116.1 | 0.000311 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.13 | 0.000161 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.16.1 | 0.00047 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.24 | 0.000431 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.30 | 0.000396 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.39.1 | 0.00004 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.53 | 0.000288 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.58 | 0.000907 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.65 | 0.000533 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.7 | 0.000196 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.7.1 | 0.000113 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.9.1 | 0.000084 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.90 | 0.000684 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.92 | 0.000287 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.93 | 0.000273 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 19 | E19X | GaA | TaG | 1 | 1 | AZ.5 | 0.003509 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.282 | 0.011628 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.398 | 0.003226 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.485 | 0.016667 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.1.89 | 0.006061 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.213 | 0.014925 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.346 | 0.001311 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.36.21 | 0.00216 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.36.8 | 0.001 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.371 | 0.001122 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.375 | 0.00082 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.396 | 0.000706 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.488 | 0.2 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.497 | 0.000315 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.517 | 0.000427 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.540 | 0.009709 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.565 | 0.00081 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.1.575 | 0.000303 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | B.6 | 0.00091 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | C.36.3 | 0.000567 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | C.37 | 0.000116 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | D.2 | 0.000075 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | N.3 | 0.005814 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | P.1.1 | 0.000318 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | P.1.10 | 0.000269 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | P.1.2 | 0.001156 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | P.5 | 0.013699 |
ORF8 | 19 | E19X | Gaa | Taa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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