CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 110 | E110X | nonsyn | Gag | Tag | 2294 | 2294 | 1 | 28221-28223 |
Details of the mutation E110X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 110 | E110X | Gag | Tag | 2294 | 2294 | All | 0.000439 |
ORF8 | 110 | E110X | Gag | Tag | 541 | 541 | B.1.1.7 | 0.000484 |
ORF8 | 110 | E110X | Gag | Tag | 422 | 422 | B.1.1.198 | 0.619677 |
ORF8 | 110 | E110X | Gag | Tag | 118 | 118 | B.1 | 0.001081 |
ORF8 | 110 | E110X | Gag | Tag | 104 | 104 | B.1.617.2 | 0.000392 |
ORF8 | 110 | E110X | Gag | Tag | 103 | 103 | B.1.540 | 1 |
ORF8 | 110 | E110X | Gag | Tag | 95 | 95 | AY.3 | 0.000945 |
ORF8 | 110 | E110X | Gag | Tag | 79 | 79 | AY.103 | 0.000491 |
ORF8 | 110 | E110X | Gag | Tag | 77 | 77 | AY.4 | 0.00012 |
ORF8 | 110 | E110X | Gag | Tag | 76 | 76 | AY.44 | 0.000463 |
ORF8 | 110 | E110X | Gag | Tag | 60 | 60 | AY.43 | 0.000266 |
ORF8 | 110 | E110X | Gag | Tag | 55 | 55 | AY.26 | 0.001557 |
ORF8 | 110 | E110X | Gag | Tag | 43 | 43 | B.1.36.31 | 0.075306 |
ORF8 | 110 | E110X | Gag | Tag | 28 | 28 | AY.46.6 | 0.002022 |
ORF8 | 110 | E110X | Gag | Tag | 21 | 21 | Q.2 | 0.012883 |
ORF8 | 110 | E110X | Gag | Tag | 19 | 19 | B.1.1 | 0.000345 |
ORF8 | 110 | E110X | Gag | Tag | 18 | 18 | AY.9 | 0.001217 |
ORF8 | 110 | E110X | Gag | Tag | 15 | 15 | AY.39 | 0.000371 |
ORF8 | 110 | E110X | Gag | Tag | 15 | 15 | B.1.177 | 0.000198 |
ORF8 | 110 | E110X | Gag | Tag | 14 | 14 | AY.102 | 0.000371 |
ORF8 | 110 | E110X | Gag | Tag | 13 | 13 | AY.25 | 0.000078 |
ORF8 | 110 | E110X | Gag | Tag | 12 | 12 | AY.20 | 0.000466 |
ORF8 | 110 | E110X | Gag | Tag | 11 | 11 | AY.120 | 0.000409 |
ORF8 | 110 | E110X | Gag | Tag | 11 | 11 | AY.34 | 0.001067 |
ORF8 | 110 | E110X | Gag | Tag | 11 | 11 | AY.9.2 | 0.000404 |
ORF8 | 110 | E110X | Gag | Tag | 11 | 11 | B.1.429 | 0.000259 |
ORF8 | 110 | E110X | Gag | Tag | 10 | 10 | B.1.1.519 | 0.000397 |
ORF8 | 110 | E110X | Gag | Tag | 9 | 9 | AY.5 | 0.000186 |
ORF8 | 110 | E110X | Gag | Tag | 9 | 9 | AY.54 | 0.000858 |
ORF8 | 110 | E110X | Gag | Tag | 7 | 7 | AY.119 | 0.000247 |
ORF8 | 110 | E110X | Gag | Tag | 7 | 7 | B.1.1.10 | 0.007804 |
ORF8 | 110 | E110X | Gag | Tag | 7 | 7 | B.1.1.446 | 0.538462 |
ORF8 | 110 | E110X | Gag | Tag | 7 | 7 | B.1.206 | 0.00571 |
ORF8 | 110 | E110X | Gag | Tag | 6 | 6 | AY.3.1 | 0.000512 |
ORF8 | 110 | E110X | Gag | Tag | 6 | 6 | AY.33 | 0.000401 |
ORF8 | 110 | E110X | Gag | Tag | 6 | 6 | B | 0.000767 |
ORF8 | 110 | E110X | Gag | Tag | 6 | 6 | B.1.351 | 0.000178 |
ORF8 | 110 | E110X | Gag | Tag | 6 | 6 | P.1 | 0.000095 |
ORF8 | 110 | E110X | Gag | Tag | 5 | 5 | AY.23 | 0.000349 |
ORF8 | 110 | E110X | Gag | Tag | 5 | 5 | AY.29 | 0.000079 |
ORF8 | 110 | E110X | Gag | Tag | 5 | 5 | AY.61 | 0.000524 |
ORF8 | 110 | E110X | Gag | Tag | 5 | 5 | B.1.1.189 | 0.007564 |
ORF8 | 110 | E110X | Gag | Tag | 5 | 5 | B.1.221 | 0.000355 |
ORF8 | 110 | E110X | Gag | Tag | 5 | 5 | B.1.524 | 0.007032 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | A | 0.001548 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | AY.46 | 0.000416 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.160 | 0.000125 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.2 | 0.000035 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.279 | 0.002054 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.36 | 0.000584 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.526 | 0.000094 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.560 | 0.018519 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.596 | 0.000349 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | B.1.621 | 0.000354 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | C.36.3 | 0.002269 |
ORF8 | 110 | E110X | Gag | Tag | 4 | 4 | Q.8 | 0.00066 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | A.2.5 | 0.001497 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.34.1 | 0.00153 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.4.4 | 0.001227 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.42 | 0.000121 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.47 | 0.000093 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.6 | 0.000123 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.62 | 0.001307 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | AY.91 | 0.002191 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | B.1.1.298 | 0.002586 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | B.1.1.432 | 0.003797 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | B.1.1.70 | 0.001023 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | B.1.258 | 0.0002 |
ORF8 | 110 | E110X | Gag | Tag | 3 | 3 | D.2 | 0.000225 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.10 | 0.00106 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.116 | 0.000574 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.38 | 0.000999 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.5.3 | 0.000675 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.53 | 0.000575 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.65 | 0.001066 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.7.1 | 0.000225 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.87 | 0.001665 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.88 | 0.001768 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.9.1 | 0.000167 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.98.1 | 0.000097 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.1.222 | 0.000408 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.1.277 | 0.001517 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.1.37 | 0.000386 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.1.54 | 0.006042 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.126 | 0.002551 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.214.2 | 0.001199 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.311 | 0.000549 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.324 | 0.00321 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.367 | 0.001585 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.400 | 0.000858 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.470 | 0.002809 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.595 | 0.000522 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.609 | 0.000959 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.617.1 | 0.000258 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.1.637 | 0.000146 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | B.27 | 0.030769 |
ORF8 | 110 | E110X | Gag | Tag | 2 | 2 | P.2 | 0.000373 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | A.2 | 0.000662 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.111 | 0.000183 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.113 | 0.000142 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.120.1 | 0.000321 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.16.1 | 0.00047 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.27 | 0.000065 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.35 | 0.000233 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.46.5 | 0.000198 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.59 | 0.00053 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.60 | 0.000938 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.69 | 0.000187 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.77 | 0.001127 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.8 | 0.000606 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.85 | 0.000427 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.94 | 0.000443 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.97 | 0.001701 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.98 | 0.000079 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.1.141 | 0.002012 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.1.207 | 0.001182 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.1.309 | 0.005848 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.1.402 | 0.011111 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.177.4 | 0.000211 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.177.46 | 0.000918 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.177.81 | 0.000189 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.22 | 0.001318 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.236 | 0.002053 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.239 | 0.001221 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.243 | 0.00007 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.247 | 0.014925 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.258.11 | 0.000396 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.320 | 0.001245 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.433 | 0.003195 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.438.1 | 0.000107 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.499 | 0.00105 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.575 | 0.000303 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | B.1.580 | 0.004065 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | C.14 | 0.004329 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | C.35 | 0.000774 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | P.7 | 0.004367 |
ORF8 | 110 | E110X | Gag | Tag | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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