CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = D35D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF835D35DsyngaCgaT33343334127996-27998

Details of the mutation D35D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF835D35DgaCgaT33343334All0.000638
ORF835D35DgaCgaT12431243B.1.4090.971094
ORF835D35DgaCgaT130130B.1.1.5190.005162
ORF835D35DgaCgaT121121B.6.81
ORF835D35DgaCgaT110110B.1.617.20.000414
ORF835D35DgaCgaT106106B.1.1600.003306
ORF835D35DgaCgaT9494AY.40.000146
ORF835D35DgaCgaT8989AY.1030.000553
ORF835D35DgaCgaT8989B.1.1.70.00008
ORF835D35DgaCgaT8585AY.440.000517
ORF835D35DgaCgaT8181B.1.5250.009166
ORF835D35DgaCgaT6969B.10.000632
ORF835D35DgaCgaT6161AY.260.001727
ORF835D35DgaCgaT4646B.1.160.310.370968
ORF835D35DgaCgaT4141AY.430.000182
ORF835D35DgaCgaT3737B.1.3510.0011
ORF835D35DgaCgaT3030AY.1000.00138
ORF835D35DgaCgaT3030AY.250.00018
ORF835D35DgaCgaT3030AY.390.000741
ORF835D35DgaCgaT2929B.1.5610.011513
ORF835D35DgaCgaT2626B.1.1.4340.009062
ORF835D35DgaCgaT2424AY.1020.000636
ORF835D35DgaCgaT2222A0.008514
ORF835D35DgaCgaT2222B.1.10.000399
ORF835D35DgaCgaT2222B.1.6320.147651
ORF835D35DgaCgaT2121B.1.177.810.003976
ORF835D35DgaCgaT2020B.1.1770.000263
ORF835D35DgaCgaT2020B.60.018198
ORF835D35DgaCgaT1919AY.360.002816
ORF835D35DgaCgaT1818B.1.20.000158
ORF835D35DgaCgaT1616B.1.3750.013115
ORF835D35DgaCgaT1616B.1.617.10.002063
ORF835D35DgaCgaT1515AY.1190.00053
ORF835D35DgaCgaT1414AY.30.000139
ORF835D35DgaCgaT1414B.1.1.1920.032333
ORF835D35DgaCgaT1414B.1.1.630.005401
ORF835D35DgaCgaT1414B.1.2360.028747
ORF835D35DgaCgaT1313B.1.1.2210.131313
ORF835D35DgaCgaT1313B.1.2340.001715
ORF835D35DgaCgaT1212AY.450.00146
ORF835D35DgaCgaT1212B.1.1.2220.002448
ORF835D35DgaCgaT1111AY.140.000968
ORF835D35DgaCgaT1111AY.330.000735
ORF835D35DgaCgaT1111Q.10.00139
ORF835D35DgaCgaT99AY.460.000937
ORF835D35DgaCgaT99B0.00115
ORF835D35DgaCgaT88AY.370.002528
ORF835D35DgaCgaT88AY.930.002185
ORF835D35DgaCgaT88B.1.177.620.009535
ORF835D35DgaCgaT88B.1.177.750.008325
ORF835D35DgaCgaT88B.1.2210.000568
ORF835D35DgaCgaT88B.1.4270.000404
ORF835D35DgaCgaT77AY.200.000272
ORF835D35DgaCgaT77AY.39.10.000277
ORF835D35DgaCgaT77B.1.1.4330.009972
ORF835D35DgaCgaT77B.1.3490.005004
ORF835D35DgaCgaT66B.1.1.2160.005343
ORF835D35DgaCgaT66B.1.1110.007051
ORF835D35DgaCgaT66B.1.2430.000418
ORF835D35DgaCgaT66P.20.00112
ORF835D35DgaCgaT55AY.4.20.000108
ORF835D35DgaCgaT55AY.50.000103
ORF835D35DgaCgaT55B.1.1.280.001556
ORF835D35DgaCgaT55B.1.1.3180.001509
ORF835D35DgaCgaT55B.1.1.330.002104
ORF835D35DgaCgaT55B.1.4290.000118
ORF835D35DgaCgaT55B.1.4990.005252
ORF835D35DgaCgaT55C.20.080645
ORF835D35DgaCgaT44A.30.008386
ORF835D35DgaCgaT44AY.98.10.000194
ORF835D35DgaCgaT44B.1.1.2910.00297
ORF835D35DgaCgaT44B.1.1.3260.007042
ORF835D35DgaCgaT44B.1.1390.002933
ORF835D35DgaCgaT44B.1.177.730.002265
ORF835D35DgaCgaT44B.1.2370.0199
ORF835D35DgaCgaT44B.1.36.10.004561
ORF835D35DgaCgaT44C.330.235294
ORF835D35DgaCgaT44D.20.0003
ORF835D35DgaCgaT33AY.10.001187
ORF835D35DgaCgaT33AY.1170.000254
ORF835D35DgaCgaT33AY.1210.000406
ORF835D35DgaCgaT33AY.130.000483
ORF835D35DgaCgaT33AY.230.000209
ORF835D35DgaCgaT33AY.750.000168
ORF835D35DgaCgaT33AY.75.10.000541
ORF835D35DgaCgaT33AY.940.001328
ORF835D35DgaCgaT33B.1.1.250.001706
ORF835D35DgaCgaT33B.1.1.2840.000322
ORF835D35DgaCgaT33B.1.1.3060.001315
ORF835D35DgaCgaT33B.1.1.3690.001339
ORF835D35DgaCgaT33B.1.1.3800.029412
ORF835D35DgaCgaT33B.1.1.50.025
ORF835D35DgaCgaT33B.1.1.500.002037
ORF835D35DgaCgaT33B.1.2580.0002
ORF835D35DgaCgaT33B.1.3110.000824
ORF835D35DgaCgaT33B.1.3960.002117
ORF835D35DgaCgaT33B.1.4000.001287
ORF835D35DgaCgaT33B.1.6210.000266
ORF835D35DgaCgaT33B.1.6230.001609
ORF835D35DgaCgaT33B.6.60.002667
ORF835D35DgaCgaT33C.370.000348
ORF835D35DgaCgaT33P.10.000047
ORF835D35DgaCgaT33P.1.150.000697
ORF835D35DgaCgaT220.111111
ORF835D35DgaCgaT22AE.30.064516
ORF835D35DgaCgaT22AY.1160.000574
ORF835D35DgaCgaT22AY.240.000862
ORF835D35DgaCgaT22AY.420.00008
ORF835D35DgaCgaT22AY.46.40.000329
ORF835D35DgaCgaT22AY.60.000082
ORF835D35DgaCgaT22AY.610.00021
ORF835D35DgaCgaT22AY.860.00166
ORF835D35DgaCgaT22AY.9.10.000167
ORF835D35DgaCgaT22AY.920.000575
ORF835D35DgaCgaT22AY.980.000158
ORF835D35DgaCgaT22B.1.1.2140.000111
ORF835D35DgaCgaT22B.1.1.3720.001377
ORF835D35DgaCgaT22B.1.1.390.001019
ORF835D35DgaCgaT22B.1.1.4160.00181
ORF835D35DgaCgaT22B.1.177.100.001756
ORF835D35DgaCgaT22B.1.258.170.000208
ORF835D35DgaCgaT22B.1.2980.004228
ORF835D35DgaCgaT22B.1.36.80.002
ORF835D35DgaCgaT22B.1.4040.002604
ORF835D35DgaCgaT22B.1.4080.00738
ORF835D35DgaCgaT22B.1.4200.020833
ORF835D35DgaCgaT22B.1.466.20.000782
ORF835D35DgaCgaT22B.1.4800.004975
ORF835D35DgaCgaT22B.1.5760.001813
ORF835D35DgaCgaT22B.1.6370.000146
ORF835D35DgaCgaT11A.20.000662
ORF835D35DgaCgaT11A.2.50.000499
ORF835D35DgaCgaT11AY.1010.00049
ORF835D35DgaCgaT11AY.1050.000643
ORF835D35DgaCgaT11AY.110.001339
ORF835D35DgaCgaT11AY.1200.000037
ORF835D35DgaCgaT11AY.160.00038
ORF835D35DgaCgaT11AY.290.000016
ORF835D35DgaCgaT11AY.320.000532
ORF835D35DgaCgaT11AY.340.000097
ORF835D35DgaCgaT11AY.34.10.00051
ORF835D35DgaCgaT11AY.4.2.10.000149
ORF835D35DgaCgaT11AY.46.60.000072
ORF835D35DgaCgaT11AY.470.000031
ORF835D35DgaCgaT11AY.5.10.003759
ORF835D35DgaCgaT11AY.5.40.000277
ORF835D35DgaCgaT11AY.620.000436
ORF835D35DgaCgaT11AY.70.000196
ORF835D35DgaCgaT11AY.7.10.000113
ORF835D35DgaCgaT11AY.700.000209
ORF835D35DgaCgaT11AY.790.001211
ORF835D35DgaCgaT11AY.840.000437
ORF835D35DgaCgaT11AY.9.20.000037
ORF835D35DgaCgaT11AY.900.000684
ORF835D35DgaCgaT11AY.99.20.000092
ORF835D35DgaCgaT11AZ.20.000821
ORF835D35DgaCgaT11AZ.30.00152
ORF835D35DgaCgaT11B.1.1.1590.004673
ORF835D35DgaCgaT11B.1.1.2200.001859
ORF835D35DgaCgaT11B.1.1.2540.011236
ORF835D35DgaCgaT11B.1.1.2630.001558
ORF835D35DgaCgaT11B.1.1.3290.003846
ORF835D35DgaCgaT11B.1.1.3510.002793
ORF835D35DgaCgaT11B.1.1.3750.011905
ORF835D35DgaCgaT11B.1.1.3760.005952
ORF835D35DgaCgaT11B.1.1.4090.002833
ORF835D35DgaCgaT11B.1.1.4110.014706
ORF835D35DgaCgaT11B.1.1040.00369
ORF835D35DgaCgaT11B.1.177.200.001517
ORF835D35DgaCgaT11B.1.177.210.000076
ORF835D35DgaCgaT11B.1.177.40.000211
ORF835D35DgaCgaT11B.1.177.420.000894
ORF835D35DgaCgaT11B.1.177.440.000519
ORF835D35DgaCgaT11B.1.177.480.003125
ORF835D35DgaCgaT11B.1.177.530.002392
ORF835D35DgaCgaT11B.1.177.540.000606
ORF835D35DgaCgaT11B.1.177.570.000281
ORF835D35DgaCgaT11B.1.177.600.000218
ORF835D35DgaCgaT11B.1.177.860.000183
ORF835D35DgaCgaT11B.1.1820.007246
ORF835D35DgaCgaT11B.1.2470.014925
ORF835D35DgaCgaT11B.1.264.10.047619
ORF835D35DgaCgaT11B.1.3240.001605
ORF835D35DgaCgaT11B.1.3290.000608
ORF835D35DgaCgaT11B.1.351.10.038462
ORF835D35DgaCgaT11B.1.360.000146
ORF835D35DgaCgaT11B.1.36.160.001425
ORF835D35DgaCgaT11B.1.36.360.000602
ORF835D35DgaCgaT11B.1.3620.001541
ORF835D35DgaCgaT11B.1.3660.004878
ORF835D35DgaCgaT11B.1.3690.000285
ORF835D35DgaCgaT11B.1.3770.004566
ORF835D35DgaCgaT11B.1.3850.010638
ORF835D35DgaCgaT11B.1.3990.001934
ORF835D35DgaCgaT11B.1.4030.003268
ORF835D35DgaCgaT11B.1.4380.006536
ORF835D35DgaCgaT11B.1.4590.004082
ORF835D35DgaCgaT11B.1.4700.001404
ORF835D35DgaCgaT11B.1.5320.006211
ORF835D35DgaCgaT11B.1.575.10.002439
ORF835D35DgaCgaT11B.1.5800.004065
ORF835D35DgaCgaT11B.1.5810.009434
ORF835D35DgaCgaT11B.1.5960.000087
ORF835D35DgaCgaT11B.1.6000.005848
ORF835D35DgaCgaT11B.1.6090.000479
ORF835D35DgaCgaT11B.340.013699
ORF835D35DgaCgaT11B.4.50.011905
ORF835D35DgaCgaT11B.550.00295
ORF835D35DgaCgaT11C.160.00106
ORF835D35DgaCgaT11C.180.002591
ORF835D35DgaCgaT11C.230.005814
ORF835D35DgaCgaT11N.60.007092
ORF835D35DgaCgaT11P.1.170.000162
ORF835D35DgaCgaT11P.30.001595
ORF835D35DgaCgaT11P.70.004367
ORF835D35DgaCgaT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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