CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = A55V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF855A55VnonsyngCagTa359235730.9947128056-28058
ORF855A55VnonsyngCAgTG3592100.0027839628056-28058
ORF855A55VnonsyngCAgTC359280.0022271728056-28058
ORF855A55VnonsyngCAgTT359210.00027839628056-28058

Details of the mutation A55V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF855A55VgCagTa35733592All0.000683
ORF855A55VgCAgTG103592All0.000002
ORF855A55VgCAgTC83592All0.000002
ORF855A55VgCAgTT13592All0
ORF855A55VgCagTa725725B.1.1.70.000649
ORF855A55VgCagTa590590B.1.617.20.002222
ORF855A55VgCagTa318320AY.430.001409
ORF855A55VgCAgTC2320AY.430.000009
ORF855A55VgCagTa239239AY.40.000372
ORF855A55VgCagTa220220AY.290.00347
ORF855A55VgCagTa213214AY.440.001296
ORF855A55VgCAgTC1214AY.440.000006
ORF855A55VgCagTa133133AY.1030.000826
ORF855A55VgCagTa9191AY.1000.004187
ORF855A55VgCagTa6173P.10.000961
ORF855A55VgCAgTG873P.10.000126
ORF855A55VgCAgTC473P.10.000063
ORF855A55VgCagTa6262B.1.1.370.011958
ORF855A55VgCagTa6060AY.250.000361
ORF855A55VgCagTa5658B.10.000513
ORF855A55VgCAgTT158B.10.000009
ORF855A55VgCAgTG158B.10.000009
ORF855A55VgCagTa3838B.1.1770.0005
ORF855A55VgCagTa3838B.1.20.000335
ORF855A55VgCagTa3535B.1.4290.000824
ORF855A55VgCagTa3030B.1.1390.021994
ORF855A55VgCagTa2929B.1.10.000526
ORF855A55VgCagTa2626AY.30.000259
ORF855A55VgCagTa2525AY.50.000516
ORF855A55VgCagTa2323B.1.1.1700.028678
ORF855A55VgCagTa1818B.1.3510.000535
ORF855A55VgCagTa1818B.1.6060.108434
ORF855A55VgCagTa1818C.370.002089
ORF855A55VgCagTa1717AY.1180.001065
ORF855A55VgCagTa1515AY.390.000371
ORF855A55VgCagTa1515B.1.177.810.00284
ORF855A55VgCagTa1313AY.4.20.000282
ORF855A55VgCagTa1313B.1.5260.000306
ORF855A55VgCagTa1313B.1.6210.001151
ORF855A55VgCagTa1212AY.1020.000318
ORF855A55VgCagTa1212B.1.1600.000374
ORF855A55VgCagTa1111AY.16.10.005169
ORF855A55VgCagTa1111AY.860.009129
ORF855A55VgCagTa99B.1.1.3180.002716
ORF855A55VgCagTa88AY.230.000558
ORF855A55VgCagTa88B.1.177.500.037559
ORF855A55VgCagTa77AY.260.000198
ORF855A55VgCagTa77AY.450.000852
ORF855A55VgCagTa77AY.46.40.001152
ORF855A55VgCagTa77B.1.1.4320.008861
ORF855A55VgCagTa77B.1.2430.000487
ORF855A55VgCagTa77C.36.30.003971
ORF855A55VgCagTa66AY.60.000247
ORF855A55VgCagTa66B.1.3780.041096
ORF855A55VgCagTa66B.1.4430.028037
ORF855A55VgCagTa66B.1.5250.000679
ORF855A55VgCagTa55AY.1190.000177
ORF855A55VgCagTa55AY.3.10.000426
ORF855A55VgCagTa55AY.380.002496
ORF855A55VgCagTa55AY.470.000156
ORF855A55VgCagTa55AY.520.004072
ORF855A55VgCagTa55AY.90.000338
ORF855A55VgCagTa55B.1.2210.000355
ORF855A55VgCagTa55B.1.6370.000365
ORF855A55VgCagTa55Q.80.000825
ORF855A55VgCagTa44AY.1170.000338
ORF855A55VgCagTa44AY.1200.000149
ORF855A55VgCagTa44AY.120.20.005141
ORF855A55VgCagTa44AY.330.000267
ORF855A55VgCagTa44AY.420.000161
ORF855A55VgCagTa44AY.790.004843
ORF855A55VgCagTa44AY.920.001149
ORF855A55VgCagTa44AY.98.10.000194
ORF855A55VgCagTa44AY.99.20.000369
ORF855A55VgCagTa44B.1.1.1860.013746
ORF855A55VgCagTa44B.1.1.5190.000159
ORF855A55VgCagTa44B.1.1.890.024242
ORF855A55VgCagTa44B.1.177.720.013559
ORF855A55VgCagTa44B.1.2340.000528
ORF855A55VgCagTa44B.1.2580.000266
ORF855A55VgCagTa44B.1.6090.001918
ORF855A55VgCagTa33AY.100.00159
ORF855A55VgCagTa33AY.1160.00086
ORF855A55VgCagTa33AY.46.60.000217
ORF855A55VgCagTa33AY.530.000863
ORF855A55VgCagTa33AY.610.000314
ORF855A55VgCagTa33AY.980.000237
ORF855A55VgCagTa33B.1.1.2220.000612
ORF855A55VgCagTa33B.1.177.600.000655
ORF855A55VgCagTa33B.1.2400.000647
ORF855A55VgCagTa33B.1.4270.000151
ORF855A55VgCagTa33B.1.4700.004213
ORF855A55VgCagTa33B.1.6190.002613
ORF855A55VgCagTa22A.2.50.000998
ORF855A55VgCagTa22A.2.5.30.020619
ORF855A55VgCagTa22AY.1100.000225
ORF855A55VgCagTa22AY.360.000296
ORF855A55VgCagTa22AY.460.000208
ORF855A55VgCagTa22AY.46.30.001867
ORF855A55VgCagTa22AY.620.000871
ORF855A55VgCagTa22AY.70.000392
ORF855A55VgCagTa22AY.9.20.000073
ORF855A55VgCagTa22B0.000256
ORF855A55VgCagTa22B.1.1.10.000653
ORF855A55VgCagTa22B.1.1.2140.000111
ORF855A55VgCagTa22B.1.1.280.000622
ORF855A55VgCagTa22B.1.1.3260.003521
ORF855A55VgCagTa22B.1.1.330.000842
ORF855A55VgCagTa22B.1.1.3370.007194
ORF855A55VgCagTa22B.1.1.3510.005587
ORF855A55VgCagTa22B.1.1.3680.006173
ORF855A55VgCagTa22B.1.1.5260.007092
ORF855A55VgCagTa22B.1.1.700.000682
ORF855A55VgCagTa22B.1.1950.01005
ORF855A55VgCagTa22B.1.2100.004264
ORF855A55VgCagTa22B.1.2410.001623
ORF855A55VgCagTa22B.1.360.000292
ORF855A55VgCagTa22B.1.3690.00057
ORF855A55VgCagTa22B.1.5960.000174
ORF855A55VgCagTa22P.1.140.000096
ORF855A55VgCagTa12P.1.170.000162
ORF855A55VgCAgTG12P.1.170.000162
ORF855A55VgCAgTC12P.20.000187
ORF855A55VgCagTa12P.20.000187
ORF855A55VgCagTa22Q.30.00029
ORF855A55VgCagTa11AA.10.007246
ORF855A55VgCagTa11AY.10.000396
ORF855A55VgCagTa11AY.1080.001103
ORF855A55VgCagTa11AY.120.2.10.000498
ORF855A55VgCagTa11AY.1210.000135
ORF855A55VgCagTa11AY.190.00114
ORF855A55VgCagTa11AY.200.000039
ORF855A55VgCagTa11AY.240.000431
ORF855A55VgCagTa11AY.29.10.000221
ORF855A55VgCagTa11AY.300.000396
ORF855A55VgCagTa11AY.350.000233
ORF855A55VgCagTa11AY.39.10.00004
ORF855A55VgCagTa11AY.4.2.10.000149
ORF855A55VgCagTa11AY.4.30.000842
ORF855A55VgCagTa11AY.4.50.000107
ORF855A55VgCagTa11AY.400.000964
ORF855A55VgCagTa11AY.5.30.000337
ORF855A55VgCagTa11AY.510.000909
ORF855A55VgCagTa11AY.540.000095
ORF855A55VgCagTa11AY.550.000917
ORF855A55VgCagTa11AY.700.000209
ORF855A55VgCagTa11AY.740.000116
ORF855A55VgCagTa11AY.780.001541
ORF855A55VgCagTa11AY.800.001129
ORF855A55VgCagTa11AY.840.000437
ORF855A55VgCagTa11AY.850.000427
ORF855A55VgCagTa11AY.9.10.000084
ORF855A55VgCagTa11AY.950.000761
ORF855A55VgCagTa11B.1.1.100.001115
ORF855A55VgCagTa11B.1.1.1210.002427
ORF855A55VgCagTa11B.1.1.1920.002309
ORF855A55VgCagTa11B.1.1.2070.001182
ORF855A55VgCagTa11B.1.1.2160.00089
ORF855A55VgCagTa11B.1.1.2840.000107
ORF855A55VgCagTa11B.1.1.3060.000438
ORF855A55VgCagTa11B.1.1.3120.001912
ORF855A55VgCagTa11B.1.1.4670.019231
ORF855A55VgCagTa11B.1.1.530.013699
ORF855A55VgCagTa11B.1.1460.004237
ORF855A55VgCagTa11B.1.160.110.005714
ORF855A55VgCagTa11B.1.177.110.001698
ORF855A55VgCagTa11B.1.177.160.000664
ORF855A55VgCagTa11B.1.177.170.000821
ORF855A55VgCagTa11B.1.177.210.000076
ORF855A55VgCagTa11B.1.177.40.000211
ORF855A55VgCagTa11B.1.177.50.001242
ORF855A55VgCagTa11B.1.177.510.004566
ORF855A55VgCagTa11B.1.177.70.000165
ORF855A55VgCagTa11B.1.177.860.000183
ORF855A55VgCagTa11B.1.258.110.000396
ORF855A55VgCagTa11B.1.258.170.000104
ORF855A55VgCagTa11B.1.258.220.002667
ORF855A55VgCagTa11B.1.2650.001271
ORF855A55VgCagTa11B.1.3250.006897
ORF855A55VgCagTa11B.1.3490.000715
ORF855A55VgCagTa11B.1.36.210.00216
ORF855A55VgCagTa11B.1.3660.004878
ORF855A55VgCagTa11B.1.3890.001002
ORF855A55VgCagTa11B.1.3970.004854
ORF855A55VgCagTa11B.1.4040.001302
ORF855A55VgCagTa11B.1.4380.006536
ORF855A55VgCagTa11B.1.4650.003802
ORF855A55VgCagTa11B.1.466.10.007194
ORF855A55VgCagTa11B.1.466.20.000391
ORF855A55VgCagTa11B.1.4990.00105
ORF855A55VgCagTa11B.1.5380.008065
ORF855A55VgCagTa11B.1.5510.00129
ORF855A55VgCagTa11B.1.5610.000397
ORF855A55VgCagTa11B.1.5770.000687
ORF855A55VgCagTa11C.160.00106
ORF855A55VgCagTa11C.170.055556
ORF855A55VgCagTa11C.180.002591
ORF855A55VgCagTa11C.37.10.002618
ORF855A55VgCagTa11C.380.008065
ORF855A55VgCagTa11D.20.000075
ORF855A55VgCagTa11L.20.011364
ORF855A55VgCagTa11N.40.004255
ORF855A55VgCagTa11P.1.120.000484
ORF855A55VgCagTa11P.1.160.000374
ORF855A55VgCagTa11P.1.70.000319
ORF855A55VgCagTa11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.