CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : Mut = A51del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF851A51deldelGCT---953953128044-28046

Details of the mutation A51del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF851A51delGCT---953953All0.000182
ORF851A51delGCT---201201B.1.1.70.00018
ORF851A51delGCT---9696AY.40.000149
ORF851A51delGCT---6161AY.1030.000379
ORF851A51delGCT---5959B.1.1.2940.074684
ORF851A51delGCT---4545B.1.3510.001338
ORF851A51delGCT---3838AY.290.000599
ORF851A51delGCT---3535B.1.10.000635
ORF851A51delGCT---3434B.1.2430.002366
ORF851A51delGCT---3333B.1.1.2220.006732
ORF851A51delGCT---3232B.1.1600.000998
ORF851A51delGCT---2121AY.440.000128
ORF851A51delGCT---1818B0.002301
ORF851A51delGCT---1717AY.30.000169
ORF851A51delGCT---1414P.10.000221
ORF851A51delGCT---1111AY.270.000712
ORF851A51delGCT---1111B.1.1.3180.003319
ORF851A51delGCT---1010B.10.000092
ORF851A51delGCT---99AY.1180.000564
ORF851A51delGCT---99B.1.617.20.000034
ORF851A51delGCT---88B.1.1.2840.000859
ORF851A51delGCT---88B.1.20.00007
ORF851A51delGCT---88B.1.2400.001725
ORF851A51delGCT---77AY.4.20.000152
ORF851A51delGCT---77B.1.1.2650.022082
ORF851A51delGCT---77B.1.1.5190.000278
ORF851A51delGCT---77B.1.36.160.009972
ORF851A51delGCT---77B.1.6280.002467
ORF851A51delGCT---77P.1.140.000335
ORF851A51delGCT---66AY.1190.000212
ORF851A51delGCT---66B.1.1770.000079
ORF851A51delGCT---66B.1.177.830.008889
ORF851A51delGCT---66B.1.243.20.086957
ORF851A51delGCT---55AY.29.10.001103
ORF851A51delGCT---440.222222
ORF851A51delGCT---44AY.60.000165
ORF851A51delGCT---44AY.7.20.002237
ORF851A51delGCT---44B.1.1.2140.000222
ORF851A51delGCT---44P.1.10.001271
ORF851A51delGCT---33AY.250.000018
ORF851A51delGCT---33AY.260.000085
ORF851A51delGCT---33B.1.220.003953
ORF851A51delGCT---33B.1.4290.000071
ORF851A51delGCT---33B.1.5090.002597
ORF851A51delGCT---33B.1.5260.000071
ORF851A51delGCT---33P.1.150.000697
ORF851A51delGCT---22AY.390.000049
ORF851A51delGCT---22AY.430.000009
ORF851A51delGCT---22AY.480.00093
ORF851A51delGCT---22AY.840.000875
ORF851A51delGCT---22B.1.2100.004264
ORF851A51delGCT---22B.1.258.170.000208
ORF851A51delGCT---22B.1.360.000292
ORF851A51delGCT---22B.1.4270.000101
ORF851A51delGCT---22B.400.000729
ORF851A51delGCT---11AE.40.043478
ORF851A51delGCT---11AY.1000.000046
ORF851A51delGCT---11AY.1080.001103
ORF851A51delGCT---11AY.230.00007
ORF851A51delGCT---11AY.4.40.000409
ORF851A51delGCT---11AY.460.000104
ORF851A51delGCT---11AY.540.000095
ORF851A51delGCT---11AY.690.000187
ORF851A51delGCT---11AY.740.000116
ORF851A51delGCT---11AY.90.000068
ORF851A51delGCT---11AY.98.10.000048
ORF851A51delGCT---11AZ.20.000821
ORF851A51delGCT---11B.1.1.1740.003378
ORF851A51delGCT---11B.1.1.2160.00089
ORF851A51delGCT---11B.1.1.250.000569
ORF851A51delGCT---11B.1.1.2690.001353
ORF851A51delGCT---11B.1.1.2970.002237
ORF851A51delGCT---11B.1.1.3220.008772
ORF851A51delGCT---11B.1.1.3540.004386
ORF851A51delGCT---11B.1.1.370.000193
ORF851A51delGCT---11B.1.1.630.000386
ORF851A51delGCT---11B.1.1260.001276
ORF851A51delGCT---11B.1.177.120.000152
ORF851A51delGCT---11B.1.177.70.000165
ORF851A51delGCT---11B.1.1950.005025
ORF851A51delGCT---11B.1.2580.000067
ORF851A51delGCT---11B.1.258.120.007874
ORF851A51delGCT---11B.1.258.90.005
ORF851A51delGCT---11B.1.351.20.000303
ORF851A51delGCT---11B.1.4450.011765
ORF851A51delGCT---11B.1.4680.005714
ORF851A51delGCT---11B.1.5400.009709
ORF851A51delGCT---11B.1.5490.007194
ORF851A51delGCT---11B.1.5640.000426
ORF851A51delGCT---11B.1.5960.000087
ORF851A51delGCT---11B.1.6210.000089
ORF851A51delGCT---11B.340.013699
ORF851A51delGCT---11C.260.007353
ORF851A51delGCT---11C.370.000116
ORF851A51delGCT---11M.30.076923
ORF851A51delGCT---11N.60.007092
ORF851A51delGCT---11P.1.120.000484
ORF851A51delGCT---11P.1.170.000162
ORF851A51delGCT---11P.1.70.000319
ORF851A51delGCT---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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