CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 93 & Codon = ccC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF893P93PsynccTccC69290.4202928170-28172

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF893P93PccTccC2969All0.000006
ORF893P93PccTccC422B.1.1.70.000004
ORF893P93PccTccC66B.1.617.20.000023
ORF893P93PccTccC44AY.40.000006
ORF893P93PccTccC23AY.430.000009
ORF893P93PccTccC13D.20.000075
ORF893P93PccTccC22AY.1030.000012
ORF893P93PccTccC12B.10.000009
ORF893P93PccTccC11A.10.000282
ORF893P93PccTccC11AY.1210.000135
ORF893P93PccTccC11AY.250.000006
ORF893P93PccTccC11AY.670.000464
ORF893P93PccTccC11B.1.1.2840.000107
ORF893P93PccTccC11B.1.3200.001245
ORF893P93PccTccC11B.1.36.350.002604
ORF893P93PccTccC11B.1.4230.010204
ORF893P93PccTccC11B.30.000831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.